Wall clock time and date at job start Tue Mar 31 2020 22:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99821 * 2 1 4 4 H 1.48492 * 109.47106 * 269.99699 * 3 2 1 5 5 H 1.48500 * 109.46943 * 29.99866 * 3 2 1 6 6 H 1.48503 * 109.46932 * 149.99857 * 3 2 1 7 7 C 1.37874 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00166 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99726 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.46753 * 180.02562 * 9 7 2 11 11 C 1.38276 * 119.93298 * 90.00507 * 10 9 7 12 12 C 1.38115 * 120.07443 * 180.02562 * 11 10 9 13 13 C 1.38868 * 119.92555 * 359.97438 * 12 11 10 14 14 N 1.39948 * 120.06840 * 180.02562 * 13 12 11 15 15 C 1.34777 * 120.00230 * 144.35928 * 14 13 12 16 16 O 1.21588 * 119.99480 * 4.51363 * 15 14 13 17 17 N 1.34771 * 120.00177 * 184.50992 * 15 14 13 18 18 C 1.46929 * 120.62887 * 354.74913 * 17 15 14 19 19 C 1.53193 * 108.77200 * 233.58554 * 18 17 15 20 20 C 1.53043 * 109.31082 * 305.36239 * 19 18 17 21 21 H 1.09010 * 109.45963 * 181.37208 * 20 19 18 22 22 O 1.42902 * 109.46146 * 301.34595 * 20 19 18 23 23 C 1.53039 * 109.53847 * 61.36625 * 20 19 18 24 24 H 1.09003 * 109.49644 * 58.58500 * 23 20 19 25 25 C 1.53000 * 109.49870 * 178.67990 * 23 20 19 26 26 O 1.42902 * 109.47238 * 185.00090 * 25 23 20 27 27 C 1.46920 * 120.63360 * 174.71929 * 17 15 14 28 28 C 1.38859 * 119.86296 * 0.27451 * 13 12 11 29 29 C 1.38124 * 119.92826 * 359.43238 * 28 13 12 30 30 H 0.97000 * 120.00018 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.47471 * 60.00392 * 9 7 2 32 32 H 1.08997 * 109.47515 * 299.99453 * 9 7 2 33 33 H 1.08001 * 119.96471 * 0.02562 * 11 10 9 34 34 H 1.07994 * 120.03777 * 180.02562 * 12 11 10 35 35 H 0.97000 * 119.99209 * 324.35833 * 14 13 12 36 36 H 1.08990 * 109.59095 * 113.80075 * 18 17 15 37 37 H 1.08998 * 109.70312 * 353.43633 * 18 17 15 38 38 H 1.09001 * 109.49683 * 185.41379 * 19 18 17 39 39 H 1.08999 * 109.50130 * 65.31529 * 19 18 17 40 40 H 0.96705 * 113.99640 * 299.99750 * 22 20 19 41 41 H 1.09001 * 109.47045 * 305.00419 * 25 23 20 42 42 H 1.09004 * 109.46913 * 65.00217 * 25 23 20 43 43 H 0.96697 * 113.99921 * 180.02562 * 26 25 23 44 44 H 1.09001 * 109.59114 * 246.20448 * 27 17 15 45 45 H 1.09008 * 109.58380 * 6.48964 * 27 17 15 46 46 H 1.07998 * 120.03717 * 179.69996 * 28 13 12 47 47 H 1.08001 * 119.96353 * 180.27548 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2304 -3.6445 0.0018 11 6 2.6778 -4.1685 1.2007 12 6 3.5757 -5.2179 1.2053 13 6 4.0289 -5.7472 0.0040 14 7 4.9383 -6.8109 0.0052 15 6 4.8601 -7.7654 -0.9431 16 8 4.0532 -7.6601 -1.8465 17 7 5.6764 -8.8365 -0.8900 18 6 6.7328 -8.9229 0.1275 19 6 8.0702 -9.1866 -0.5715 20 6 7.9436 -10.4310 -1.4534 21 1 8.9009 -10.6351 -1.9331 22 8 7.5670 -11.5494 -0.6474 23 6 6.8772 -10.1926 -2.5249 24 1 7.1516 -9.3246 -3.1244 25 6 6.7746 -11.4247 -3.4262 26 8 5.8641 -11.1586 -4.4950 27 6 5.5264 -9.9403 -1.8480 28 6 3.5817 -5.2154 -1.1982 29 6 2.6790 -4.1700 -1.1960 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6241 -2.5567 0.8903 33 1 2.3246 -3.7567 2.1346 34 1 3.9244 -5.6269 2.1420 35 1 5.6249 -6.8610 0.6885 36 1 6.5125 -9.7397 0.8147 37 1 6.7882 -7.9851 0.6803 38 1 8.8461 -9.3484 0.1767 39 1 8.3333 -8.3281 -1.1894 40 1 8.1990 -11.7595 0.0537 41 1 7.7574 -11.6582 -3.8358 42 1 6.4131 -12.2720 -2.8435 43 1 5.7494 -11.8981 -5.1073 44 1 5.2076 -10.8401 -1.3219 45 1 4.7830 -9.6735 -2.5993 46 1 3.9360 -5.6217 -2.1341 47 1 2.3275 -3.7589 -2.1308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932563465.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:50 Heat of formation + Delta-G solvation = -126.843985 kcal Electronic energy + Delta-G solvation = -28511.641660 eV Core-core repulsion = 24465.113469 eV Total energy + Delta-G solvation = -4046.528191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 42.33 seconds Orbital eigenvalues (eV) -42.00074 -40.42196 -39.34524 -37.58000 -36.45368 -36.32896 -34.99528 -33.33776 -32.18354 -31.95541 -31.74069 -28.58949 -26.86734 -26.30302 -24.91175 -23.79310 -23.33066 -22.30858 -21.38668 -20.64028 -19.56656 -18.49996 -18.32159 -18.26683 -17.90742 -16.97797 -16.74637 -16.59510 -16.12207 -15.91045 -15.81668 -15.56811 -15.21004 -14.93958 -14.63506 -14.59344 -14.48726 -14.26918 -14.06973 -13.74255 -13.57873 -13.29336 -13.14318 -12.98164 -12.73597 -12.62257 -12.43766 -12.31506 -12.05846 -11.95519 -11.67511 -11.54639 -11.50239 -11.22539 -10.97744 -10.88130 -10.79429 -10.59391 -9.75549 -9.73082 -8.83599 -8.17046 -6.31873 0.48570 0.58248 1.40175 1.41942 1.45351 1.53265 1.99521 2.41124 2.76987 3.01528 3.11928 3.18303 3.35242 3.71630 3.83088 3.93538 4.03577 4.06780 4.16892 4.22425 4.38138 4.39124 4.50322 4.52713 4.55526 4.60983 4.62341 4.67761 4.71944 4.78787 4.87645 5.00684 5.06516 5.13697 5.26263 5.29604 5.34039 5.41330 5.48963 5.50040 5.62893 5.76829 5.86021 6.09145 6.13797 6.26953 6.80709 6.81157 6.90882 6.98024 7.36340 7.41541 8.91001 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023915 B = 0.002109 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.552641 B =13274.786743 C =13643.184168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.057 3.943 10 C -0.074 4.074 11 C -0.112 4.112 12 C -0.126 4.126 13 C 0.134 3.866 14 N -0.667 5.667 15 C 0.697 3.303 16 O -0.618 6.618 17 N -0.620 5.620 18 C 0.105 3.895 19 C -0.163 4.163 20 C 0.121 3.879 21 H 0.082 0.918 22 O -0.573 6.573 23 C -0.096 4.096 24 H 0.075 0.925 25 C 0.088 3.912 26 O -0.599 6.599 27 C 0.147 3.853 28 C -0.123 4.123 29 C -0.121 4.121 30 H 0.265 0.735 31 H -0.002 1.002 32 H 0.008 0.992 33 H 0.129 0.871 34 H 0.160 0.840 35 H 0.420 0.580 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.070 0.930 40 H 0.398 0.602 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.397 0.603 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.121 0.879 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.903 -27.770 1.551 36.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.075 4.075 11 C -0.130 4.130 12 C -0.146 4.146 13 C 0.040 3.960 14 N -0.318 5.318 15 C 0.399 3.601 16 O -0.498 6.498 17 N -0.357 5.357 18 C -0.016 4.016 19 C -0.201 4.201 20 C 0.062 3.938 21 H 0.100 0.900 22 O -0.382 6.382 23 C -0.116 4.116 24 H 0.093 0.907 25 C 0.010 3.990 26 O -0.408 6.408 27 C 0.024 3.976 28 C -0.144 4.144 29 C -0.140 4.140 30 H 0.074 0.926 31 H 0.016 0.984 32 H 0.026 0.974 33 H 0.147 0.853 34 H 0.178 0.822 35 H 0.261 0.739 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.248 0.752 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.247 0.753 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.139 0.861 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 22.682 -27.097 0.832 35.347 hybrid contribution 0.430 0.668 -0.092 0.800 sum 23.112 -26.429 0.740 35.117 Atomic orbital electron populations 1.70094 1.07725 1.27924 1.51422 1.25971 0.95802 1.03222 0.94650 0.85408 0.78683 0.78283 0.78451 1.19991 1.20376 1.18702 1.21381 0.93121 0.91120 1.50757 0.92594 1.18090 0.92861 0.91206 0.95796 1.20400 0.97718 0.95694 0.93686 1.20971 0.97936 0.96588 0.97535 1.21004 0.98466 0.98148 0.97002 1.17386 0.94935 0.90015 0.93672 1.42418 1.34492 1.22803 1.32124 1.16083 0.81529 0.80345 0.82136 1.90924 1.42269 1.79208 1.37385 1.47332 1.34330 1.18563 1.35425 1.21898 0.86265 1.03523 0.89956 1.22637 0.97430 0.98974 1.01058 1.21561 0.96034 0.85969 0.90257 0.90014 1.86506 1.53130 1.49112 1.49432 1.21570 0.95411 0.98840 0.95750 0.90687 1.22113 0.93111 0.96131 0.87660 1.86498 1.66854 1.45537 1.41937 1.21286 0.97580 0.87758 0.90995 1.21096 0.99334 0.95866 0.98091 1.20912 0.98554 0.96742 0.97751 0.92597 0.98415 0.97375 0.85279 0.82233 0.73875 0.89032 0.89157 0.86356 0.91101 0.75155 0.91514 0.92245 0.75271 0.90767 0.92105 0.86139 0.87415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.53 -30.92 9.09 25.60 0.23 -30.69 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.06 3.22 5.10 29.10 0.15 3.37 16 10 C -0.07 -3.50 5.07 -19.84 -0.10 -3.60 16 11 C -0.11 -4.40 9.69 22.25 0.22 -4.18 16 12 C -0.13 -3.97 9.97 22.39 0.22 -3.75 16 13 C 0.13 4.52 6.28 38.14 0.24 4.76 16 14 N -0.67 -17.17 5.25 -317.18 -1.66 -18.84 16 15 C 0.70 20.72 8.14 179.06 1.46 22.18 16 16 O -0.62 -24.84 13.25 -3.99 -0.05 -24.89 16 17 N -0.62 -12.99 2.97 -836.94 -2.49 -15.47 16 18 C 0.11 1.10 6.14 86.36 0.53 1.63 16 19 C -0.16 -0.98 5.80 30.67 0.18 -0.80 16 20 C 0.12 0.91 3.19 30.62 0.10 1.00 16 21 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 22 O -0.57 -3.70 11.52 -148.98 -1.72 -5.42 16 23 C -0.10 -1.48 2.41 -10.72 -0.03 -1.50 16 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 25 C 0.09 1.15 6.23 71.98 0.45 1.60 16 26 O -0.60 -10.44 13.31 -148.98 -1.98 -12.42 16 27 C 0.15 3.20 5.32 86.36 0.46 3.66 16 28 C -0.12 -5.00 8.69 22.39 0.19 -4.80 16 29 C -0.12 -5.45 9.69 22.25 0.22 -5.24 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.00 -0.15 8.08 -2.39 -0.02 -0.17 16 32 H 0.01 0.47 8.08 -2.39 -0.02 0.45 16 33 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 34 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 35 H 0.42 7.03 6.31 -92.71 -0.59 6.44 16 36 H 0.09 0.75 7.81 -2.39 -0.02 0.73 16 37 H 0.09 0.68 5.66 -2.39 -0.01 0.67 16 38 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.40 -0.91 9.08 -74.05 -0.67 -1.58 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.06 0.74 7.87 -2.38 -0.02 0.72 16 43 H 0.40 3.10 9.12 -74.06 -0.68 2.42 16 44 H 0.07 1.54 7.81 -2.39 -0.02 1.52 16 45 H 0.06 1.83 6.84 -2.38 -0.02 1.81 16 46 H 0.12 5.07 6.29 -2.91 -0.02 5.05 16 47 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -84.21 380.62 -1.53 -85.74 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -0.92 Total: 17.20 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 4.98 Total: -15.84 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -3.87 Total: -91.60 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -3.75 Total: -42.73 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -84.21 -1.53 -85.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932563465.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.101 kcal (2) G-P(sol) polarization free energy of solvation -84.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 42.33 seconds