Wall clock time and date at job start Tue Mar 31 2020 22:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99985 * 2 1 4 4 H 1.48497 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47161 * 299.99807 * 3 2 1 6 6 H 1.48500 * 109.47056 * 59.99812 * 3 2 1 7 7 C 1.37874 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00104 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.47399 * 180.02562 * 9 7 2 11 11 C 1.38282 * 119.93161 * 89.99455 * 10 9 7 12 12 C 1.38111 * 120.06946 * 179.97438 * 11 10 9 13 13 C 1.38874 * 119.92863 * 0.02562 * 12 11 10 14 14 N 1.39945 * 120.06663 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99767 * 143.66156 * 14 13 12 16 16 O 1.21586 * 119.99976 * 4.67920 * 15 14 13 17 17 N 1.34773 * 119.99882 * 184.68531 * 15 14 13 18 18 C 1.46502 * 119.99806 * 175.00983 * 17 15 14 19 19 C 1.52999 * 110.56685 * 300.73533 * 18 17 15 20 20 C 1.52994 * 109.47025 * 302.86269 * 19 18 17 21 21 O 1.42900 * 109.46888 * 184.59849 * 20 19 18 22 22 C 1.54510 * 110.50795 * 178.05570 * 18 17 15 23 23 C 1.54479 * 104.18698 * 241.42117 * 22 18 17 24 24 O 1.44423 * 104.80088 * 23.91422 * 23 22 18 25 25 C 1.44420 * 105.27564 * 319.48769 * 24 23 22 26 26 C 1.38864 * 119.86174 * 0.26715 * 13 12 11 27 27 C 1.38123 * 119.92590 * 359.47527 * 26 13 12 28 28 H 0.96997 * 120.00193 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47263 * 60.00126 * 9 7 2 30 30 H 1.08998 * 109.47244 * 299.99973 * 9 7 2 31 31 H 1.07997 * 119.96265 * 359.97438 * 11 10 9 32 32 H 1.08002 * 120.03814 * 179.97438 * 12 11 10 33 33 H 0.96995 * 120.00286 * 323.66260 * 14 13 12 34 34 H 0.96995 * 120.00035 * 355.00669 * 17 15 14 35 35 H 1.09005 * 109.46910 * 62.86051 * 19 18 17 36 36 H 1.09001 * 109.47024 * 182.85936 * 19 18 17 37 37 H 1.09002 * 109.47199 * 304.59670 * 20 19 18 38 38 H 1.08998 * 109.47805 * 64.60039 * 20 19 18 39 39 H 0.96706 * 114.00058 * 179.97438 * 21 20 19 40 40 H 1.09008 * 110.50829 * 122.71443 * 22 18 17 41 41 H 1.09004 * 110.51406 * 0.14066 * 22 18 17 42 42 H 1.09005 * 110.37188 * 142.74401 * 23 22 18 43 43 H 1.08997 * 110.37795 * 264.97093 * 23 22 18 44 44 H 1.09003 * 110.37529 * 159.34305 * 25 24 23 45 45 H 1.09007 * 110.37340 * 281.67825 * 25 24 23 46 46 H 1.07997 * 120.03554 * 179.70239 * 26 13 12 47 47 H 1.08001 * 119.96051 * 180.22910 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2304 -3.6446 0.0027 11 6 2.6788 -4.1679 1.2016 12 6 3.5758 -5.2180 1.2058 13 6 4.0279 -5.7480 0.0044 14 7 4.9372 -6.8117 0.0054 15 6 4.8493 -7.7742 -0.9340 16 8 4.0353 -7.6751 -1.8316 17 7 5.6636 -8.8467 -0.8781 18 6 5.4957 -9.9445 -1.8335 19 6 4.0928 -10.5447 -1.7213 20 6 3.8541 -11.0183 -0.2862 21 8 2.5874 -11.6748 -0.2059 22 6 6.5696 -11.0313 -1.6036 23 6 7.3595 -11.0697 -2.9306 24 8 7.1530 -9.7679 -3.5208 25 6 5.7640 -9.4559 -3.2777 26 6 3.5803 -5.2163 -1.1978 27 6 2.6791 -4.1696 -1.1952 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6248 -2.5562 0.8919 31 1 2.3272 -3.7550 2.1355 32 1 3.9261 -5.6260 2.1425 33 1 5.6308 -6.8563 0.6820 34 1 6.3609 -8.8917 -0.2053 35 1 3.3522 -9.7888 -1.9824 36 1 4.0041 -11.3909 -2.4027 37 1 4.6425 -11.7132 0.0030 38 1 3.8617 -10.1601 0.3857 39 1 2.3695 -12.0025 0.6775 40 1 6.1010 -11.9963 -1.4101 41 1 7.2240 -10.7530 -0.7775 42 1 8.4194 -11.2346 -2.7367 43 1 6.9680 -11.8503 -3.5829 44 1 5.5981 -8.3810 -3.3503 45 1 5.1263 -9.9877 -3.9840 46 1 3.9337 -5.6231 -2.1337 47 1 2.3278 -3.7580 -2.1299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932567588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:18 Heat of formation + Delta-G solvation = -97.656533 kcal Electronic energy + Delta-G solvation = -28727.608478 eV Core-core repulsion = 24682.345950 eV Total energy + Delta-G solvation = -4045.262528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20588 -39.68887 -38.17533 -37.26409 -35.37869 -34.74699 -33.10106 -32.12018 -30.41783 -30.24631 -30.12156 -28.20588 -26.49573 -23.84720 -23.45510 -23.02011 -22.32138 -21.46359 -20.14592 -20.04753 -18.48701 -17.88457 -17.51724 -16.63702 -16.28429 -16.14877 -15.97787 -15.62613 -15.06940 -14.98617 -14.79859 -14.35837 -14.20637 -14.10774 -13.85273 -13.26198 -12.97533 -12.81226 -12.67614 -12.51449 -12.31169 -12.13445 -11.96296 -11.93635 -11.46510 -11.36590 -11.26178 -11.14471 -10.81603 -10.58073 -10.39988 -10.30700 -10.20534 -10.06618 -9.81900 -9.43025 -9.32581 -9.20614 -8.40318 -8.24570 -7.35600 -6.01293 -4.05176 1.96738 2.10798 2.43287 3.09264 3.30980 3.38593 3.43650 3.56856 3.69120 3.90965 4.05763 4.39535 4.40966 4.47225 4.59745 4.64733 4.75055 4.87096 4.99110 5.06997 5.16092 5.22341 5.32716 5.34865 5.38171 5.45023 5.57564 5.61770 5.65239 5.90892 5.96239 6.09865 6.12858 6.22703 6.24142 6.39771 6.56853 6.69907 6.96708 7.04229 7.20517 7.25479 7.29329 7.55129 7.75524 7.83120 7.90499 7.94747 8.35412 8.46314 9.00516 9.58497 11.08342 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020373 B = 0.002292 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.024732 B =12213.459561 C =12868.681499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.042 4.042 11 C -0.109 4.109 12 C -0.144 4.144 13 C 0.119 3.881 14 N -0.681 5.681 15 C 0.704 3.296 16 O -0.566 6.566 17 N -0.736 5.736 18 C 0.173 3.827 19 C -0.128 4.128 20 C 0.083 3.917 21 O -0.573 6.573 22 C -0.160 4.160 23 C 0.044 3.956 24 O -0.371 6.371 25 C 0.042 3.958 26 C -0.113 4.113 27 C -0.109 4.109 28 H 0.261 0.739 29 H 0.029 0.971 30 H 0.028 0.972 31 H 0.121 0.879 32 H 0.112 0.888 33 H 0.400 0.600 34 H 0.396 0.604 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.379 0.621 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.109 0.891 45 H 0.071 0.929 46 H 0.128 0.872 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.803 -26.573 0.880 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.043 4.043 11 C -0.128 4.128 12 C -0.164 4.164 13 C 0.026 3.974 14 N -0.328 5.328 15 C 0.404 3.596 16 O -0.442 6.442 17 N -0.393 5.393 18 C 0.085 3.915 19 C -0.167 4.167 20 C 0.005 3.995 21 O -0.378 6.378 22 C -0.198 4.198 23 C -0.033 4.033 24 O -0.290 6.290 25 C -0.035 4.035 26 C -0.133 4.133 27 C -0.128 4.128 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.234 0.766 34 H 0.231 0.769 35 H 0.117 0.883 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.226 0.774 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.127 0.873 45 H 0.089 0.911 46 H 0.146 0.854 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.055 -26.135 -0.704 29.683 hybrid contribution 1.058 0.641 1.540 1.975 sum 15.114 -25.494 0.836 29.649 Atomic orbital electron populations 1.69967 1.06023 1.26659 1.50696 1.25019 0.94878 0.99248 0.95282 0.86492 0.80141 0.83562 0.77591 1.19683 1.20960 1.20990 1.21107 0.93075 0.89873 1.50685 0.92419 1.18355 0.92596 0.89624 0.98385 1.20705 0.96411 0.95260 0.91879 1.20856 0.97522 0.95916 0.98515 1.20717 1.00357 0.99888 0.95452 1.17270 0.95617 0.90165 0.94301 1.42452 1.34169 1.23664 1.32488 1.15917 0.81470 0.79487 0.82686 1.90933 1.39456 1.78506 1.35282 1.45223 1.37321 1.19456 1.37282 1.21414 0.94835 0.85420 0.89788 1.21872 0.96390 1.01901 0.96519 1.22080 0.84837 0.95247 0.97352 1.86488 1.37553 1.78058 1.35696 1.23342 0.97364 0.99237 0.99836 1.23411 1.00922 0.86714 0.92262 1.89196 1.27022 1.34057 1.78685 1.23945 0.82596 1.03541 0.93437 1.21105 0.99143 0.96082 0.96996 1.21016 0.97544 0.95730 0.98487 0.92926 0.95288 0.95357 0.86085 0.87011 0.76560 0.76899 0.88280 0.90130 0.94024 0.93705 0.77408 0.88954 0.89769 0.88822 0.91852 0.87255 0.91056 0.85420 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -14.35 9.09 -34.44 -0.31 -14.66 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.05 1.23 5.10 -29.04 -0.15 1.08 16 10 C -0.04 -0.93 5.07 -104.59 -0.53 -1.46 16 11 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 12 C -0.14 -2.33 9.97 -39.39 -0.39 -2.72 16 13 C 0.12 1.94 6.27 -83.69 -0.52 1.42 16 14 N -0.68 -8.26 5.34 -14.22 -0.08 -8.33 16 15 C 0.70 8.81 7.66 -86.92 -0.67 8.15 16 16 O -0.57 -9.19 10.78 5.29 0.06 -9.13 16 17 N -0.74 -6.19 4.45 -50.79 -0.23 -6.41 16 18 C 0.17 1.41 0.66 -130.08 -0.09 1.33 16 19 C -0.13 -1.21 4.16 -26.73 -0.11 -1.32 16 20 C 0.08 0.69 6.67 37.15 0.25 0.94 16 21 O -0.57 -5.50 13.66 -35.23 -0.48 -5.98 16 22 C -0.16 -0.82 5.94 -25.16 -0.15 -0.97 16 23 C 0.04 0.27 7.63 37.93 0.29 0.56 16 24 O -0.37 -3.79 11.65 -35.23 -0.41 -4.20 16 25 C 0.04 0.43 6.48 38.10 0.25 0.68 16 26 C -0.11 -2.11 8.69 -39.39 -0.34 -2.45 16 27 C -0.11 -2.25 9.69 -39.61 -0.38 -2.64 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 30 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 31 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 32 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.40 3.38 8.84 -40.82 -0.36 3.02 16 34 H 0.40 2.16 8.16 -40.82 -0.33 1.83 16 35 H 0.10 1.30 6.46 -51.93 -0.34 0.97 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.25 6.78 -51.93 -0.35 -0.11 16 38 H 0.04 0.41 7.74 -51.93 -0.40 0.01 16 39 H 0.38 1.92 9.12 45.56 0.42 2.33 16 40 H 0.09 0.36 6.84 -51.92 -0.36 0.01 16 41 H 0.08 0.31 7.53 -51.93 -0.39 -0.08 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.11 1.40 6.52 -51.93 -0.34 1.06 16 45 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 46 H 0.13 2.37 6.34 -52.49 -0.33 2.04 16 47 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -35.05 381.26 -9.13 -44.18 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.11 Total: 6.43 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -3.34 Total: -13.05 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.43 Total: -40.64 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.83 Total: -19.32 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.05 -9.13 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932567588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.478 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds