Wall clock time and date at job start Tue Mar 31 2020 22:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99985 * 2 1 4 4 H 1.48497 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47161 * 299.99807 * 3 2 1 6 6 H 1.48500 * 109.47056 * 59.99812 * 3 2 1 7 7 C 1.37874 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00104 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.50704 * 109.47399 * 180.02562 * 9 7 2 11 11 C 1.38282 * 119.93161 * 89.99455 * 10 9 7 12 12 C 1.38111 * 120.06946 * 179.97438 * 11 10 9 13 13 C 1.38874 * 119.92863 * 0.02562 * 12 11 10 14 14 N 1.39945 * 120.06663 * 179.97438 * 13 12 11 15 15 C 1.34779 * 119.99767 * 143.66156 * 14 13 12 16 16 O 1.21586 * 119.99976 * 4.67920 * 15 14 13 17 17 N 1.34773 * 119.99882 * 184.68531 * 15 14 13 18 18 C 1.46502 * 119.99806 * 175.00983 * 17 15 14 19 19 C 1.52999 * 110.56685 * 300.73533 * 18 17 15 20 20 C 1.52994 * 109.47025 * 302.86269 * 19 18 17 21 21 O 1.42900 * 109.46888 * 184.59849 * 20 19 18 22 22 C 1.54510 * 110.50795 * 178.05570 * 18 17 15 23 23 C 1.54479 * 104.18698 * 241.42117 * 22 18 17 24 24 O 1.44423 * 104.80088 * 23.91422 * 23 22 18 25 25 C 1.44420 * 105.27564 * 319.48769 * 24 23 22 26 26 C 1.38864 * 119.86174 * 0.26715 * 13 12 11 27 27 C 1.38123 * 119.92590 * 359.47527 * 26 13 12 28 28 H 0.96997 * 120.00193 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47263 * 60.00126 * 9 7 2 30 30 H 1.08998 * 109.47244 * 299.99973 * 9 7 2 31 31 H 1.07997 * 119.96265 * 359.97438 * 11 10 9 32 32 H 1.08002 * 120.03814 * 179.97438 * 12 11 10 33 33 H 0.96995 * 120.00286 * 323.66260 * 14 13 12 34 34 H 0.96995 * 120.00035 * 355.00669 * 17 15 14 35 35 H 1.09005 * 109.46910 * 62.86051 * 19 18 17 36 36 H 1.09001 * 109.47024 * 182.85936 * 19 18 17 37 37 H 1.09002 * 109.47199 * 304.59670 * 20 19 18 38 38 H 1.08998 * 109.47805 * 64.60039 * 20 19 18 39 39 H 0.96706 * 114.00058 * 179.97438 * 21 20 19 40 40 H 1.09008 * 110.50829 * 122.71443 * 22 18 17 41 41 H 1.09004 * 110.51406 * 0.14066 * 22 18 17 42 42 H 1.09005 * 110.37188 * 142.74401 * 23 22 18 43 43 H 1.08997 * 110.37795 * 264.97093 * 23 22 18 44 44 H 1.09003 * 110.37529 * 159.34305 * 25 24 23 45 45 H 1.09007 * 110.37340 * 281.67825 * 25 24 23 46 46 H 1.07997 * 120.03554 * 179.70239 * 26 13 12 47 47 H 1.08001 * 119.96051 * 180.22910 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2304 -3.6446 0.0027 11 6 2.6788 -4.1679 1.2016 12 6 3.5758 -5.2180 1.2058 13 6 4.0279 -5.7480 0.0044 14 7 4.9372 -6.8117 0.0054 15 6 4.8493 -7.7742 -0.9340 16 8 4.0353 -7.6751 -1.8316 17 7 5.6636 -8.8467 -0.8781 18 6 5.4957 -9.9445 -1.8335 19 6 4.0928 -10.5447 -1.7213 20 6 3.8541 -11.0183 -0.2862 21 8 2.5874 -11.6748 -0.2059 22 6 6.5696 -11.0313 -1.6036 23 6 7.3595 -11.0697 -2.9306 24 8 7.1530 -9.7679 -3.5208 25 6 5.7640 -9.4559 -3.2777 26 6 3.5803 -5.2163 -1.1978 27 6 2.6791 -4.1696 -1.1952 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6248 -2.5562 0.8919 31 1 2.3272 -3.7550 2.1355 32 1 3.9261 -5.6260 2.1425 33 1 5.6308 -6.8563 0.6820 34 1 6.3609 -8.8917 -0.2053 35 1 3.3522 -9.7888 -1.9824 36 1 4.0041 -11.3909 -2.4027 37 1 4.6425 -11.7132 0.0030 38 1 3.8617 -10.1601 0.3857 39 1 2.3695 -12.0025 0.6775 40 1 6.1010 -11.9963 -1.4101 41 1 7.2240 -10.7530 -0.7775 42 1 8.4194 -11.2346 -2.7367 43 1 6.9680 -11.8503 -3.5829 44 1 5.5981 -8.3810 -3.3503 45 1 5.1263 -9.9877 -3.9840 46 1 3.9337 -5.6231 -2.1337 47 1 2.3278 -3.7580 -2.1299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932567588.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:56:56 Heat of formation + Delta-G solvation = -124.976477 kcal Electronic energy + Delta-G solvation = -28728.793160 eV Core-core repulsion = 24682.345950 eV Total energy + Delta-G solvation = -4046.447210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 21.05 seconds Orbital eigenvalues (eV) -42.09197 -40.70406 -39.42935 -37.95066 -36.42256 -35.87909 -34.99973 -33.16102 -31.81279 -31.71263 -30.87458 -29.02311 -28.20219 -25.31533 -24.21405 -23.99139 -23.74654 -22.59851 -21.56780 -20.84572 -19.45815 -18.66044 -18.51029 -18.43655 -17.47260 -16.96503 -16.73153 -16.71362 -16.39689 -16.05214 -15.90914 -15.82264 -15.27042 -14.95494 -14.80659 -14.57497 -14.48852 -14.25553 -13.79039 -13.66306 -13.33908 -13.23945 -13.10215 -12.97243 -12.82915 -12.63234 -12.52930 -12.44444 -12.05878 -12.02697 -11.72723 -11.63778 -11.51458 -11.16125 -10.95575 -10.89889 -10.72968 -10.60407 -10.13007 -9.73768 -8.83713 -8.17759 -6.32604 0.50785 0.60010 1.39536 1.40385 1.50422 1.53975 2.05326 2.40554 2.95330 3.02722 3.07550 3.11224 3.12882 3.45297 3.77230 4.05216 4.07157 4.10458 4.14136 4.18313 4.31250 4.32471 4.40478 4.44268 4.55780 4.62485 4.68087 4.74606 4.78177 4.85633 4.88662 4.88971 4.97405 5.14229 5.18122 5.31869 5.34523 5.43908 5.46162 5.52654 5.64738 5.76827 5.78090 5.97139 6.10579 6.14367 6.28090 6.80421 6.86370 6.99125 7.35844 7.49969 8.90351 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020373 B = 0.002292 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.024732 B =12213.459561 C =12868.681499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.055 0.945 9 C 0.057 3.943 10 C -0.075 4.075 11 C -0.114 4.114 12 C -0.126 4.126 13 C 0.138 3.862 14 N -0.668 5.668 15 C 0.700 3.300 16 O -0.605 6.605 17 N -0.714 5.714 18 C 0.175 3.825 19 C -0.126 4.126 20 C 0.085 3.915 21 O -0.598 6.598 22 C -0.147 4.147 23 C 0.036 3.964 24 O -0.395 6.395 25 C 0.042 3.958 26 C -0.121 4.121 27 C -0.123 4.123 28 H 0.265 0.735 29 H -0.003 1.003 30 H 0.007 0.993 31 H 0.126 0.874 32 H 0.159 0.841 33 H 0.423 0.577 34 H 0.416 0.584 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.036 0.964 39 H 0.397 0.603 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.124 0.876 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.147 -28.883 2.918 34.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.563 4.563 8 H 0.074 0.926 9 C 0.020 3.980 10 C -0.076 4.076 11 C -0.133 4.133 12 C -0.147 4.147 13 C 0.044 3.956 14 N -0.317 5.317 15 C 0.400 3.600 16 O -0.484 6.484 17 N -0.371 5.371 18 C 0.088 3.912 19 C -0.165 4.165 20 C 0.007 3.993 21 O -0.407 6.407 22 C -0.184 4.184 23 C -0.041 4.041 24 O -0.315 6.315 25 C -0.036 4.036 26 C -0.141 4.141 27 C -0.141 4.141 28 H 0.074 0.926 29 H 0.016 0.984 30 H 0.025 0.975 31 H 0.144 0.856 32 H 0.177 0.823 33 H 0.262 0.738 34 H 0.254 0.746 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.247 0.753 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.142 0.858 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 17.461 -28.500 1.381 33.452 hybrid contribution 0.052 1.186 0.848 1.459 sum 17.513 -27.314 2.230 32.523 Atomic orbital electron populations 1.70093 1.07716 1.27864 1.51503 1.25961 0.95788 1.03204 0.94664 0.85366 0.78939 0.78634 0.77928 1.18833 1.20412 1.19927 1.21411 0.93102 0.91151 1.50630 0.92641 1.18090 0.92899 0.91289 0.95724 1.20386 0.97727 0.95678 0.93781 1.20960 0.98129 0.96755 0.97428 1.21013 0.98385 0.98067 0.97191 1.17302 0.94839 0.90061 0.93421 1.42241 1.33974 1.22379 1.33141 1.16119 0.81565 0.80215 0.82070 1.90935 1.41273 1.79336 1.36843 1.45031 1.36612 1.18098 1.37406 1.21430 0.95420 0.85929 0.88454 1.21807 0.95869 1.00906 0.97909 1.22106 0.85473 0.95740 0.95944 1.86443 1.38409 1.78256 1.37587 1.23346 0.96322 0.98749 1.00032 1.23703 1.02466 0.85112 0.92772 1.89170 1.26522 1.36317 1.79449 1.23805 0.83092 1.01589 0.95148 1.21093 0.99129 0.95694 0.98204 1.20914 0.98720 0.96894 0.97608 0.92596 0.98449 0.97496 0.85579 0.82306 0.73847 0.74586 0.92678 0.89373 0.90443 0.94611 0.75291 0.86829 0.87325 0.86857 0.90950 0.90573 0.91206 0.85779 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.53 -30.71 9.09 25.60 0.23 -30.48 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.06 3.16 5.10 29.10 0.15 3.31 16 10 C -0.08 -3.47 5.07 -19.84 -0.10 -3.57 16 11 C -0.11 -4.38 9.69 22.25 0.22 -4.17 16 12 C -0.13 -3.77 9.97 22.39 0.22 -3.55 16 13 C 0.14 4.28 6.27 38.15 0.24 4.52 16 14 N -0.67 -14.43 5.34 -317.17 -1.69 -16.12 16 15 C 0.70 16.55 7.66 179.05 1.37 17.92 16 16 O -0.61 -20.03 10.78 -3.99 -0.04 -20.07 16 17 N -0.71 -10.17 4.45 -432.87 -1.93 -12.09 16 18 C 0.17 2.50 0.66 4.73 0.00 2.51 16 19 C -0.13 -2.23 4.16 30.59 0.13 -2.11 16 20 C 0.08 1.19 6.67 71.98 0.48 1.67 16 21 O -0.60 -10.40 13.66 -148.98 -2.03 -12.44 16 22 C -0.15 -0.88 5.94 31.61 0.19 -0.70 16 23 C 0.04 0.33 7.63 72.48 0.55 0.88 16 24 O -0.40 -7.57 11.65 -148.98 -1.74 -9.31 16 25 C 0.04 0.84 6.48 72.60 0.47 1.31 16 26 C -0.12 -4.59 8.69 22.39 0.19 -4.39 16 27 C -0.12 -5.36 9.69 22.25 0.22 -5.14 16 28 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 29 H 0.00 -0.17 8.08 -2.39 -0.02 -0.19 16 30 H 0.01 0.39 8.08 -2.39 -0.02 0.37 16 31 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 32 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 33 H 0.42 5.34 8.84 -92.71 -0.82 4.53 16 34 H 0.42 2.77 8.16 -92.71 -0.76 2.01 16 35 H 0.05 1.49 6.46 -2.38 -0.02 1.48 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.08 0.54 6.78 -2.39 -0.02 0.52 16 38 H 0.04 0.56 7.74 -2.39 -0.02 0.54 16 39 H 0.40 3.16 9.12 -74.05 -0.68 2.49 16 40 H 0.11 0.29 6.84 -2.38 -0.02 0.27 16 41 H 0.11 0.19 7.53 -2.39 -0.02 0.17 16 42 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.08 2.05 6.52 -2.39 -0.02 2.03 16 45 H 0.07 1.37 7.88 -2.38 -0.02 1.35 16 46 H 0.12 4.80 6.34 -2.91 -0.02 4.78 16 47 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -81.71 381.26 -1.33 -83.04 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -1.23 Total: 18.36 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 5.02 Total: -21.42 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -3.33 Total: -85.27 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -3.81 Total: -41.82 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -81.71 -1.33 -83.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932567588.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.938 kcal (2) G-P(sol) polarization free energy of solvation -81.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.05 seconds