Wall clock time and date at job start Tue Mar 31 2020 22:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99950 * 2 1 4 4 H 1.48504 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47141 * 299.99998 * 3 2 1 6 6 H 1.48498 * 109.47248 * 60.00407 * 3 2 1 7 7 C 1.37878 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47245 * 180.02562 * 9 7 2 11 11 C 1.38275 * 119.93149 * 89.99503 * 10 9 7 12 12 C 1.38121 * 120.06968 * 180.02562 * 11 10 9 13 13 C 1.38868 * 119.92758 * 0.02562 * 12 11 10 14 14 N 1.39946 * 120.06672 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00246 * 35.08726 * 14 13 12 16 16 O 1.21591 * 119.99982 * 355.37790 * 15 14 13 17 17 N 1.34776 * 120.00081 * 175.37992 * 15 14 13 18 18 C 1.46501 * 119.99926 * 179.72408 * 17 15 14 19 19 C 1.52995 * 109.46917 * 180.27159 * 18 17 15 20 20 O 1.42900 * 109.54383 * 65.00428 * 19 18 17 21 21 C 1.53178 * 109.54965 * 304.82327 * 19 18 17 22 22 C 1.53098 * 109.15958 * 183.24029 * 21 19 18 23 23 O 1.42906 * 109.48693 * 57.47537 * 22 21 19 24 24 C 1.42906 * 114.09543 * 298.88788 * 23 22 21 25 25 C 1.53087 * 109.41367 * 61.15888 * 24 23 22 26 26 C 1.38862 * 119.86067 * 0.24834 * 13 12 11 27 27 C 1.38113 * 119.93034 * 359.49644 * 26 13 12 28 28 H 0.97007 * 119.99838 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.47391 * 59.99634 * 9 7 2 30 30 H 1.09002 * 109.46938 * 299.99552 * 9 7 2 31 31 H 1.08003 * 119.96967 * 0.02562 * 11 10 9 32 32 H 1.07996 * 120.03604 * 179.97438 * 12 11 10 33 33 H 0.96995 * 119.99711 * 215.08395 * 14 13 12 34 34 H 0.96996 * 119.99919 * 359.97438 * 17 15 14 35 35 H 1.08996 * 109.47237 * 300.27584 * 18 17 15 36 36 H 1.09006 * 109.47315 * 60.27609 * 18 17 15 37 37 H 0.96709 * 113.99804 * 299.99418 * 20 19 18 38 38 H 1.09005 * 109.51949 * 303.06029 * 21 19 18 39 39 H 1.08995 * 109.52111 * 63.24199 * 21 19 18 40 40 H 1.09000 * 109.40726 * 297.49349 * 22 21 19 41 41 H 1.09001 * 109.49132 * 177.50959 * 22 21 19 42 42 H 1.08999 * 109.48058 * 301.16968 * 24 23 22 43 43 H 1.08999 * 109.48528 * 181.15057 * 24 23 22 44 44 H 1.08998 * 109.51915 * 182.48526 * 25 24 23 45 45 H 1.08998 * 109.57272 * 62.33023 * 25 24 23 46 46 H 1.07997 * 120.03860 * 179.72676 * 26 13 12 47 47 H 1.08003 * 119.96602 * 180.25399 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6778 -4.1695 1.1970 12 6 3.5757 -5.2190 1.2005 13 6 4.0295 -5.7466 -0.0012 14 7 4.9397 -6.8096 -0.0010 15 6 4.8674 -7.7585 0.9533 16 8 4.0667 -7.6475 1.8616 17 7 5.6827 -8.8305 0.9009 18 6 5.6083 -9.8589 1.9416 19 6 6.6369 -10.9536 1.6511 20 8 7.9547 -10.4102 1.7515 21 6 6.4155 -11.5032 0.2386 22 6 7.3957 -12.6520 -0.0129 23 8 7.2117 -13.6620 0.9812 24 6 7.4530 -13.2163 2.3174 25 6 6.4736 -12.0917 2.6633 26 6 3.5825 -5.2135 -1.2030 27 6 2.6806 -4.1675 -1.1998 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5563 -0.8918 30 1 0.6241 -2.5574 0.8881 31 1 2.3249 -3.7584 2.1313 32 1 3.9252 -5.6282 2.1369 33 1 5.6226 -6.8634 -0.6877 34 1 6.3212 -8.9192 0.1762 35 1 5.8197 -9.4099 2.9120 36 1 4.6086 -10.2934 1.9523 37 1 8.1291 -9.6851 1.1358 38 1 5.3936 -11.8713 0.1470 39 1 6.5851 -10.7115 -0.4910 40 1 8.4170 -12.2743 0.0373 41 1 7.2133 -13.0763 -1.0003 42 1 8.4750 -12.8460 2.3981 43 1 7.3118 -14.0470 3.0088 44 1 6.6849 -11.7204 3.6661 45 1 5.4527 -12.4714 2.6230 46 1 3.9370 -5.6187 -2.1392 47 1 2.3295 -3.7552 -2.1342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932571309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:46 Heat of formation + Delta-G solvation = -104.904165 kcal Electronic energy + Delta-G solvation = -27961.848271 eV Core-core repulsion = 23916.271461 eV Total energy + Delta-G solvation = -4045.576809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 20.70 seconds Orbital eigenvalues (eV) -40.97534 -40.15604 -38.39735 -37.31473 -34.97936 -34.60270 -33.06188 -32.58724 -31.68925 -30.45371 -30.25315 -27.96901 -26.36125 -24.34046 -23.71874 -22.89366 -22.33651 -21.19601 -20.73345 -20.23116 -18.81205 -17.60370 -17.20499 -16.51855 -16.40140 -16.29937 -15.97290 -15.76084 -15.34839 -14.98898 -14.78641 -14.76533 -14.22144 -14.03668 -13.96139 -13.54104 -13.10582 -12.99883 -12.85874 -12.77486 -12.54889 -12.48443 -11.99541 -11.89397 -11.48812 -11.38247 -11.27858 -11.01868 -10.86054 -10.63348 -10.61254 -10.41738 -10.19298 -9.95678 -9.87814 -9.48839 -9.42733 -9.23743 -8.41773 -8.27018 -7.37342 -6.02743 -4.06654 1.93929 2.08424 2.40637 3.08621 3.29739 3.37356 3.37574 3.42269 3.51965 3.90695 4.00000 4.05389 4.17172 4.39188 4.43184 4.57782 4.70854 4.90681 4.92828 4.98659 5.15206 5.16143 5.20897 5.31249 5.37812 5.41678 5.44346 5.48351 5.59085 5.64147 5.93014 5.98881 6.05000 6.14827 6.21579 6.48237 6.67763 6.69807 6.93781 6.96053 7.00043 7.18428 7.23471 7.53434 7.72918 7.77787 7.88597 7.93230 8.33834 8.41699 8.98980 9.57028 11.06847 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.036472 B = 0.001768 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.538050 B =15830.602590 C =15897.885285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.510 4.510 8 H 0.058 0.942 9 C 0.047 3.953 10 C -0.043 4.043 11 C -0.109 4.109 12 C -0.116 4.116 13 C 0.118 3.882 14 N -0.680 5.680 15 C 0.702 3.298 16 O -0.568 6.568 17 N -0.748 5.748 18 C 0.115 3.885 19 C 0.123 3.877 20 O -0.551 6.551 21 C -0.182 4.182 22 C 0.065 3.935 23 O -0.383 6.383 24 C 0.064 3.936 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.109 4.109 28 H 0.261 0.739 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.400 0.600 34 H 0.391 0.609 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.376 0.624 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.113 0.887 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.983 -26.327 -0.235 31.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.010 3.990 10 C -0.043 4.043 11 C -0.128 4.128 12 C -0.136 4.136 13 C 0.025 3.975 14 N -0.327 5.327 15 C 0.403 3.597 16 O -0.443 6.443 17 N -0.406 5.406 18 C -0.010 4.010 19 C 0.082 3.918 20 O -0.357 6.357 21 C -0.221 4.221 22 C -0.012 4.012 23 O -0.302 6.302 24 C -0.012 4.012 25 C -0.178 4.178 26 C -0.165 4.165 27 C -0.127 4.127 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.139 0.861 32 H 0.147 0.853 33 H 0.234 0.766 34 H 0.225 0.775 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.223 0.777 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.131 0.869 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.094 -26.811 1.053 31.289 hybrid contribution 1.032 1.705 -1.148 2.301 sum 17.127 -25.106 -0.095 30.391 Atomic orbital electron populations 1.69969 1.06025 1.26663 1.50649 1.25021 0.94882 0.99252 0.95267 0.86489 0.80128 0.83545 0.77597 1.19691 1.20984 1.20960 1.21109 0.93085 0.89869 1.50746 0.92405 1.18358 0.92598 0.89612 0.98411 1.20717 0.96449 0.95283 0.91886 1.21022 0.97578 0.95658 0.98506 1.21146 0.99220 0.96132 0.97077 1.17288 0.95616 0.90197 0.94358 1.42415 1.34910 1.24235 1.31139 1.15889 0.81428 0.79555 0.82855 1.90965 1.39808 1.78250 1.35323 1.45061 1.42121 1.23206 1.30224 1.21909 0.99902 0.87727 0.91426 1.21480 0.82576 0.92486 0.95257 1.86588 1.30575 1.54373 1.64142 1.22885 1.02476 0.99746 0.96947 1.22493 0.97970 0.88598 0.92104 1.87943 1.90642 1.36153 1.15449 1.22526 0.98171 0.96770 0.83760 1.22145 1.01833 0.94594 0.99239 1.20708 1.00383 0.99965 0.95404 1.20865 0.97407 0.95937 0.98540 0.92921 0.95312 0.95284 0.86109 0.85293 0.76553 0.77496 0.90284 0.90391 0.77667 0.89506 0.90570 0.92516 0.88790 0.92152 0.88612 0.89461 0.89215 0.86926 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.31 9.09 -34.44 -0.31 -14.62 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 9 C 0.05 1.22 5.10 -29.04 -0.15 1.07 16 10 C -0.04 -0.94 5.07 -104.59 -0.53 -1.47 16 11 C -0.11 -2.25 9.69 -39.61 -0.38 -2.63 16 12 C -0.12 -2.16 8.70 -39.39 -0.34 -2.51 16 13 C 0.12 1.92 6.30 -83.69 -0.53 1.40 16 14 N -0.68 -8.16 5.34 -14.22 -0.08 -8.23 16 15 C 0.70 8.94 8.41 -86.92 -0.73 8.20 16 16 O -0.57 -9.85 13.78 5.29 0.07 -9.78 16 17 N -0.75 -5.82 5.05 -65.23 -0.33 -6.15 16 18 C 0.12 0.89 4.85 -4.04 -0.02 0.87 16 19 C 0.12 0.70 0.72 -90.44 -0.07 0.64 16 20 O -0.55 -3.26 11.95 -35.23 -0.42 -3.68 16 21 C -0.18 -0.89 4.84 -26.59 -0.13 -1.02 16 22 C 0.07 0.36 6.69 37.21 0.25 0.61 16 23 O -0.38 -2.98 10.77 -35.23 -0.38 -3.36 16 24 C 0.06 0.40 6.69 37.20 0.25 0.64 16 25 C -0.14 -0.81 5.15 -26.59 -0.14 -0.95 16 26 C -0.14 -2.32 9.97 -39.40 -0.39 -2.71 16 27 C -0.11 -2.09 9.69 -39.61 -0.38 -2.48 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.12 2.45 8.06 -52.48 -0.42 2.03 16 32 H 0.13 2.44 6.22 -52.49 -0.33 2.11 16 33 H 0.40 3.20 8.84 -40.82 -0.36 2.84 16 34 H 0.39 1.70 6.43 -40.82 -0.26 1.44 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.38 1.20 8.20 45.56 0.37 1.57 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.25 6.70 -51.93 -0.35 -0.10 16 40 H 0.06 0.30 7.82 -51.93 -0.41 -0.10 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.39 7.82 -51.93 -0.41 -0.01 16 43 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -34.90 382.89 -9.70 -44.59 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.35 Total: 3.49 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -3.70 Total: -13.43 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.33 Total: -40.15 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.73 Total: -16.82 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.90 -9.70 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932571309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.310 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.70 seconds