Wall clock time and date at job start Tue Mar 31 2020 22:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86808 * 119.99950 * 2 1 4 4 H 1.48504 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47141 * 299.99998 * 3 2 1 6 6 H 1.48498 * 109.47248 * 60.00407 * 3 2 1 7 7 C 1.37878 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47245 * 180.02562 * 9 7 2 11 11 C 1.38275 * 119.93149 * 89.99503 * 10 9 7 12 12 C 1.38121 * 120.06968 * 180.02562 * 11 10 9 13 13 C 1.38868 * 119.92758 * 0.02562 * 12 11 10 14 14 N 1.39946 * 120.06672 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00246 * 35.08726 * 14 13 12 16 16 O 1.21591 * 119.99982 * 355.37790 * 15 14 13 17 17 N 1.34776 * 120.00081 * 175.37992 * 15 14 13 18 18 C 1.46501 * 119.99926 * 179.72408 * 17 15 14 19 19 C 1.52995 * 109.46917 * 180.27159 * 18 17 15 20 20 O 1.42900 * 109.54383 * 65.00428 * 19 18 17 21 21 C 1.53178 * 109.54965 * 304.82327 * 19 18 17 22 22 C 1.53098 * 109.15958 * 183.24029 * 21 19 18 23 23 O 1.42906 * 109.48693 * 57.47537 * 22 21 19 24 24 C 1.42906 * 114.09543 * 298.88788 * 23 22 21 25 25 C 1.53087 * 109.41367 * 61.15888 * 24 23 22 26 26 C 1.38862 * 119.86067 * 0.24834 * 13 12 11 27 27 C 1.38113 * 119.93034 * 359.49644 * 26 13 12 28 28 H 0.97007 * 119.99838 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.47391 * 59.99634 * 9 7 2 30 30 H 1.09002 * 109.46938 * 299.99552 * 9 7 2 31 31 H 1.08003 * 119.96967 * 0.02562 * 11 10 9 32 32 H 1.07996 * 120.03604 * 179.97438 * 12 11 10 33 33 H 0.96995 * 119.99711 * 215.08395 * 14 13 12 34 34 H 0.96996 * 119.99919 * 359.97438 * 17 15 14 35 35 H 1.08996 * 109.47237 * 300.27584 * 18 17 15 36 36 H 1.09006 * 109.47315 * 60.27609 * 18 17 15 37 37 H 0.96709 * 113.99804 * 299.99418 * 20 19 18 38 38 H 1.09005 * 109.51949 * 303.06029 * 21 19 18 39 39 H 1.08995 * 109.52111 * 63.24199 * 21 19 18 40 40 H 1.09000 * 109.40726 * 297.49349 * 22 21 19 41 41 H 1.09001 * 109.49132 * 177.50959 * 22 21 19 42 42 H 1.08999 * 109.48058 * 301.16968 * 24 23 22 43 43 H 1.08999 * 109.48528 * 181.15057 * 24 23 22 44 44 H 1.08998 * 109.51915 * 182.48526 * 25 24 23 45 45 H 1.08998 * 109.57272 * 62.33023 * 25 24 23 46 46 H 1.07997 * 120.03860 * 179.72676 * 26 13 12 47 47 H 1.08003 * 119.96602 * 180.25399 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0015 11 6 2.6778 -4.1695 1.1970 12 6 3.5757 -5.2190 1.2005 13 6 4.0295 -5.7466 -0.0012 14 7 4.9397 -6.8096 -0.0010 15 6 4.8674 -7.7585 0.9533 16 8 4.0667 -7.6475 1.8616 17 7 5.6827 -8.8305 0.9009 18 6 5.6083 -9.8589 1.9416 19 6 6.6369 -10.9536 1.6511 20 8 7.9547 -10.4102 1.7515 21 6 6.4155 -11.5032 0.2386 22 6 7.3957 -12.6520 -0.0129 23 8 7.2117 -13.6620 0.9812 24 6 7.4530 -13.2163 2.3174 25 6 6.4736 -12.0917 2.6633 26 6 3.5825 -5.2135 -1.2030 27 6 2.6806 -4.1675 -1.1998 28 1 -0.4850 0.8401 0.0004 29 1 0.6247 -2.5563 -0.8918 30 1 0.6241 -2.5574 0.8881 31 1 2.3249 -3.7584 2.1313 32 1 3.9252 -5.6282 2.1369 33 1 5.6226 -6.8634 -0.6877 34 1 6.3212 -8.9192 0.1762 35 1 5.8197 -9.4099 2.9120 36 1 4.6086 -10.2934 1.9523 37 1 8.1291 -9.6851 1.1358 38 1 5.3936 -11.8713 0.1470 39 1 6.5851 -10.7115 -0.4910 40 1 8.4170 -12.2743 0.0373 41 1 7.2133 -13.0763 -1.0003 42 1 8.4750 -12.8460 2.3981 43 1 7.3118 -14.0470 3.0088 44 1 6.6849 -11.7204 3.6661 45 1 5.4527 -12.4714 2.6230 46 1 3.9370 -5.6187 -2.1392 47 1 2.3295 -3.7552 -2.1342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932571309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:34 Heat of formation + Delta-G solvation = -130.975634 kcal Electronic energy + Delta-G solvation = -27962.978814 eV Core-core repulsion = 23916.271461 eV Total energy + Delta-G solvation = -4046.707353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.83925 -40.92252 -39.69852 -37.91871 -36.29916 -35.46444 -34.93054 -33.23393 -32.18359 -32.00639 -31.73880 -29.00231 -27.82076 -25.25304 -24.72812 -23.96855 -23.68428 -22.35641 -21.65035 -21.18126 -19.76870 -18.71937 -18.48730 -17.67662 -17.10989 -17.00029 -16.87400 -16.82109 -16.48827 -15.93633 -15.86246 -15.83155 -15.51299 -15.08026 -14.72674 -14.58113 -14.47264 -14.25072 -14.02075 -13.75284 -13.56664 -13.30079 -13.24858 -13.10442 -12.93291 -12.63366 -12.45605 -12.30596 -12.07041 -11.95899 -11.68917 -11.54274 -11.45400 -11.26012 -11.07567 -10.89725 -10.60247 -10.43811 -10.27137 -9.74267 -8.83868 -8.17538 -6.32310 0.49773 0.59654 1.39951 1.40584 1.47383 1.54147 2.02448 2.40708 2.95258 3.02320 3.07626 3.11552 3.14380 3.47114 3.60129 3.72444 4.00986 4.07456 4.18397 4.30194 4.39542 4.40632 4.45611 4.57479 4.59892 4.65017 4.67905 4.68459 4.74495 4.79417 4.85156 5.02334 5.05369 5.13751 5.20792 5.28794 5.30831 5.34424 5.43423 5.50829 5.63827 5.76958 5.89370 6.10545 6.14255 6.26097 6.27655 6.66442 6.80741 6.93346 7.36129 7.44154 8.90475 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.036472 B = 0.001768 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.538050 B =15830.602590 C =15897.885285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.056 3.944 10 C -0.076 4.076 11 C -0.122 4.122 12 C -0.124 4.124 13 C 0.136 3.864 14 N -0.665 5.665 15 C 0.699 3.301 16 O -0.616 6.616 17 N -0.721 5.721 18 C 0.118 3.882 19 C 0.134 3.866 20 O -0.559 6.559 21 C -0.178 4.178 22 C 0.061 3.939 23 O -0.405 6.405 24 C 0.065 3.935 25 C -0.144 4.144 26 C -0.126 4.126 27 C -0.114 4.114 28 H 0.265 0.735 29 H 0.007 0.993 30 H -0.002 1.002 31 H 0.107 0.893 32 H 0.125 0.875 33 H 0.425 0.575 34 H 0.412 0.588 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.388 0.612 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.056 0.944 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.161 0.839 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.824 -27.450 -1.960 33.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.019 3.981 10 C -0.077 4.077 11 C -0.141 4.141 12 C -0.144 4.144 13 C 0.042 3.958 14 N -0.314 5.314 15 C 0.399 3.601 16 O -0.495 6.495 17 N -0.380 5.380 18 C -0.007 4.007 19 C 0.093 3.907 20 O -0.367 6.367 21 C -0.216 4.216 22 C -0.016 4.016 23 O -0.324 6.324 24 C -0.012 4.012 25 C -0.182 4.182 26 C -0.146 4.146 27 C -0.132 4.132 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.016 0.984 31 H 0.125 0.875 32 H 0.143 0.857 33 H 0.264 0.736 34 H 0.250 0.750 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.238 0.762 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.074 0.926 43 H 0.123 0.877 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.179 0.821 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 19.011 -27.976 -0.721 33.831 hybrid contribution 0.207 1.900 -0.591 2.001 sum 19.217 -26.075 -1.312 32.419 Atomic orbital electron populations 1.70095 1.07710 1.27841 1.51482 1.25959 0.95786 1.03191 0.94671 0.85367 0.78957 0.78644 0.77893 1.18800 1.19996 1.20441 1.21422 0.93142 0.91148 1.50648 0.92577 1.18098 0.92920 0.91273 0.95788 1.20405 0.97762 0.95706 0.93820 1.20925 0.98742 0.96814 0.97642 1.21131 0.99232 0.95750 0.98280 1.17325 0.94889 0.90142 0.93485 1.42168 1.34653 1.22822 1.31742 1.16085 0.81456 0.80339 0.82171 1.90953 1.42007 1.79340 1.37240 1.44775 1.41094 1.21497 1.30611 1.21913 1.00215 0.87865 0.90677 1.21327 0.81919 0.91527 0.95917 1.86587 1.30259 1.55034 1.64844 1.22860 1.01938 1.00159 0.96632 1.22638 0.98314 0.88492 0.92126 1.87915 1.90784 1.37430 1.16250 1.22569 0.97899 0.97178 0.83531 1.22178 1.01933 0.94662 0.99401 1.21010 0.98354 0.98083 0.97162 1.20974 0.98023 0.96776 0.97448 0.92617 0.97437 0.98391 0.87475 0.85679 0.73622 0.74959 0.91872 0.91299 0.76200 0.90157 0.88357 0.92152 0.87755 0.92566 0.87682 0.89433 0.89066 0.82119 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 2 C 0.00 0.10 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.64 29.54 68.60 2.03 46.66 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.53 -30.44 9.09 25.60 0.23 -30.20 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.06 3.09 5.10 29.10 0.15 3.23 16 10 C -0.08 -3.47 5.07 -19.84 -0.10 -3.57 16 11 C -0.12 -5.26 9.69 22.25 0.22 -5.04 16 12 C -0.12 -4.61 8.70 22.39 0.19 -4.41 16 13 C 0.14 4.09 6.30 38.15 0.24 4.33 16 14 N -0.66 -13.52 5.34 -317.18 -1.69 -15.22 16 15 C 0.70 16.06 8.41 179.06 1.51 17.57 16 16 O -0.62 -20.88 13.78 -4.00 -0.06 -20.93 16 17 N -0.72 -9.06 5.05 -478.54 -2.42 -11.48 16 18 C 0.12 1.62 4.85 86.38 0.42 2.04 16 19 C 0.13 1.25 0.72 -10.68 -0.01 1.24 16 20 O -0.56 -5.16 11.95 -148.98 -1.78 -6.94 16 21 C -0.18 -1.24 4.84 30.69 0.15 -1.09 16 22 C 0.06 0.53 6.69 72.01 0.48 1.02 16 23 O -0.40 -5.67 10.77 -148.98 -1.60 -7.28 16 24 C 0.06 0.71 6.69 72.01 0.48 1.19 16 25 C -0.14 -1.48 5.15 30.68 0.16 -1.32 16 26 C -0.13 -3.64 9.97 22.39 0.22 -3.42 16 27 C -0.11 -4.27 9.69 22.25 0.22 -4.05 16 28 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 29 H 0.01 0.42 8.08 -2.39 -0.02 0.40 16 30 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 31 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 32 H 0.13 4.77 6.22 -2.91 -0.02 4.75 16 33 H 0.42 4.58 8.84 -92.71 -0.82 3.76 16 34 H 0.41 1.78 6.43 -92.71 -0.60 1.18 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.39 1.12 8.20 -74.05 -0.61 0.52 16 38 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.10 0.22 6.70 -2.39 -0.02 0.20 16 40 H 0.06 0.49 7.82 -2.39 -0.02 0.47 16 41 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.66 7.82 -2.39 -0.02 0.64 16 43 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 47 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -78.99 382.89 -1.23 -80.22 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -1.01 Total: 13.42 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 5.02 Total: -21.91 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -3.83 Total: -83.24 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -3.44 Total: -35.15 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -78.99 -1.23 -80.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932571309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.754 kcal (2) G-P(sol) polarization free energy of solvation -78.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds