Wall clock time and date at job start Tue Mar 31 2020 21:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 120.00120 * 2 1 4 4 H 1.48502 * 109.46896 * 274.98829 * 3 2 1 5 5 H 1.48501 * 109.46951 * 34.98189 * 3 2 1 6 6 H 1.48492 * 109.47136 * 154.98368 * 3 2 1 7 7 C 1.38813 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00469 * 187.02689 * 7 2 1 9 9 N 1.36935 * 119.99748 * 7.02995 * 7 2 1 10 10 C 1.47424 * 125.65133 * 174.82743 * 9 7 2 11 11 C 1.54912 * 104.93008 * 204.15523 * 10 9 7 12 12 H 1.09001 * 111.00319 * 81.04529 * 11 10 9 13 13 C 1.53001 * 111.00302 * 204.85761 * 11 10 9 14 14 N 1.46498 * 109.47279 * 293.54488 * 13 11 10 15 15 C 1.34771 * 120.00195 * 179.97438 * 14 13 11 16 16 O 1.21703 * 119.99910 * 0.02562 * 15 14 13 17 17 C 1.46656 * 120.00617 * 180.02562 * 15 14 13 18 18 C 1.36767 * 125.96378 * 179.71806 * 17 15 14 19 19 C 1.39654 * 106.53799 * 179.85301 * 18 17 15 20 20 C 1.35572 * 107.40924 * 0.45471 * 19 18 17 21 21 O 1.33493 * 108.61540 * 359.66555 * 20 19 18 22 22 C 1.51003 * 123.78913 * 179.57570 * 20 19 18 23 23 C 1.53316 * 108.41918 * 343.28262 * 22 20 19 24 24 C 1.53111 * 109.55053 * 50.17428 * 23 22 20 25 25 C 1.50694 * 128.12530 * 180.23424 * 19 18 17 26 26 C 1.55159 * 101.58072 * 322.93479 * 11 10 9 27 27 H 1.08997 * 110.71630 * 276.95937 * 26 11 10 28 28 O 1.42900 * 110.71984 * 153.86856 * 26 11 10 29 29 C 1.47292 * 125.79485 * 354.82496 * 9 7 2 30 30 H 0.96997 * 119.99818 * 0.02562 * 1 2 3 31 31 H 1.08992 * 110.36982 * 85.26213 * 10 9 7 32 32 H 1.09001 * 110.36388 * 323.04655 * 10 9 7 33 33 H 1.08995 * 109.47032 * 53.55007 * 13 11 10 34 34 H 1.08995 * 109.46995 * 173.54541 * 13 11 10 35 35 H 0.97008 * 119.99912 * 0.02562 * 14 13 11 36 36 H 1.08005 * 126.73072 * 0.02562 * 18 17 15 37 37 H 1.08999 * 109.67092 * 103.02034 * 22 20 19 38 38 H 1.09003 * 109.67417 * 223.51329 * 22 20 19 39 39 H 1.09005 * 109.45331 * 170.19208 * 23 22 20 40 40 H 1.08996 * 109.46153 * 290.14145 * 23 22 20 41 41 H 1.08998 * 109.48158 * 49.75184 * 24 23 22 42 42 H 1.09003 * 109.47654 * 169.76966 * 24 23 22 43 43 H 1.08997 * 109.68505 * 44.18332 * 25 19 18 44 44 H 1.08993 * 109.71337 * 283.63709 * 25 19 18 45 45 H 0.96695 * 114.00031 * 180.02562 * 28 26 11 46 46 H 1.09004 * 109.85433 * 59.50077 * 29 9 7 47 47 H 1.09001 * 110.00331 * 298.43784 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0842 -1.2056 0.1150 9 7 1.3334 -2.3836 -0.1441 10 6 1.9494 -3.7172 -0.2687 11 6 0.8930 -4.5775 -1.0060 12 1 0.9282 -4.4028 -2.0813 13 6 1.0768 -6.0628 -0.6884 14 7 2.3470 -6.5288 -1.2502 15 6 2.7224 -7.8136 -1.0930 16 8 2.0061 -8.5868 -0.4847 17 6 3.9942 -8.2800 -1.6549 18 6 4.4950 -9.5495 -1.5640 19 6 5.7177 -9.5437 -2.2388 20 6 5.9198 -8.2855 -2.7015 21 8 4.8782 -7.5291 -2.3479 22 6 7.1420 -7.8638 -3.4814 23 6 8.2323 -8.9235 -3.2838 24 6 7.6522 -10.3132 -3.5605 25 6 6.6746 -10.6903 -2.4402 26 6 -0.4282 -4.0378 -0.3971 27 1 -0.6379 -4.5200 0.5577 28 8 -1.5161 -4.2234 -1.3048 29 6 -0.1305 -2.5364 -0.2012 30 1 -0.4850 0.8400 -0.0004 31 1 2.1563 -4.1332 0.7172 32 1 2.8665 -3.6581 -0.8549 33 1 1.0834 -6.2052 0.3922 34 1 0.2560 -6.6319 -1.1247 35 1 2.9182 -5.9124 -1.7348 36 1 4.0339 -10.3919 -1.0698 37 1 6.8932 -7.7860 -4.5398 38 1 7.4960 -6.8997 -3.1160 39 1 9.0554 -8.7301 -3.9718 40 1 8.5988 -8.8805 -2.2583 41 1 7.1254 -10.3038 -4.5147 42 1 8.4605 -11.0434 -3.5987 43 1 6.1206 -11.5856 -2.7224 44 1 7.2261 -10.8751 -1.5184 45 1 -2.3653 -3.9023 -0.9719 46 1 -0.5297 -1.9667 -1.0404 47 1 -0.5783 -2.1879 0.7295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958134253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:24 Heat of formation + Delta-G solvation = -59.334160 kcal Electronic energy + Delta-G solvation = -28462.146547 eV Core-core repulsion = 24418.545802 eV Total energy + Delta-G solvation = -4043.600745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.35 seconds Orbital eigenvalues (eV) -43.02443 -39.57932 -38.19253 -37.48057 -35.22393 -34.69346 -33.28752 -32.27572 -30.60846 -30.18570 -29.15775 -27.58138 -25.79219 -24.57258 -23.44070 -22.75618 -21.96130 -20.93735 -20.30817 -20.01597 -19.12299 -17.98516 -16.96082 -16.77070 -16.75587 -16.13524 -15.84639 -15.28663 -15.09520 -14.77256 -14.35172 -14.24998 -14.05835 -13.88838 -13.69595 -13.19492 -13.15027 -13.08493 -12.86504 -12.67343 -12.55148 -12.43999 -12.04736 -11.48189 -11.33516 -11.30194 -11.26051 -11.00770 -10.96217 -10.84154 -10.61409 -10.38509 -10.06040 -9.88449 -9.86258 -9.81859 -9.24955 -9.09617 -8.66110 -8.50663 -6.92035 -5.79192 -3.12278 0.91813 2.09823 2.39881 3.13887 3.15282 3.36812 3.41972 3.44035 4.22772 4.33640 4.40576 4.42488 4.50110 4.70976 4.72418 4.84386 4.99427 5.02544 5.07352 5.10302 5.18674 5.35555 5.40047 5.42061 5.47495 5.48296 5.53940 5.64882 5.66705 5.74554 5.79785 5.83312 5.85926 5.98124 6.01335 6.18526 6.23213 6.30769 6.37664 6.51088 6.72905 6.80103 7.34452 7.46534 7.49157 7.72403 8.06158 8.16302 8.17941 9.12987 9.74010 10.39022 11.33132 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.002505 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.127047 B =11173.426671 C =12849.982729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.141 3.859 11 C -0.108 4.108 12 H 0.090 0.910 13 C 0.133 3.867 14 N -0.712 5.712 15 C 0.602 3.398 16 O -0.526 6.526 17 C -0.078 4.078 18 C -0.112 4.112 19 C -0.193 4.193 20 C 0.018 3.982 21 O -0.154 6.154 22 C -0.042 4.042 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.049 4.049 26 C 0.084 3.916 27 H 0.058 0.942 28 O -0.566 6.566 29 C 0.150 3.850 30 H 0.253 0.747 31 H 0.023 0.977 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.407 0.593 36 H 0.159 0.841 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.376 0.624 46 H 0.060 0.940 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.481 -19.893 -6.781 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.098 0.902 9 N -0.329 5.329 10 C 0.014 3.986 11 C -0.128 4.128 12 H 0.109 0.891 13 C 0.009 3.991 14 N -0.362 5.362 15 C 0.388 3.612 16 O -0.404 6.404 17 C -0.130 4.130 18 C -0.132 4.132 19 C -0.195 4.195 20 C -0.035 4.035 21 O -0.050 6.050 22 C -0.079 4.079 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.087 4.087 26 C 0.024 3.976 27 H 0.075 0.925 28 O -0.371 6.371 29 C 0.025 3.975 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.242 0.758 36 H 0.177 0.823 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.223 0.777 46 H 0.078 0.922 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.311 -20.123 -6.741 24.534 hybrid contribution 0.135 1.425 0.249 1.452 sum 12.446 -18.698 -6.493 23.381 Atomic orbital electron populations 1.69949 1.04981 1.25207 1.56600 1.24839 0.95735 0.97780 1.01938 0.86095 0.78689 0.83427 0.77543 1.21539 1.21719 1.20572 1.19065 0.91150 0.82361 1.43338 0.90222 1.44361 1.01285 1.00976 1.86309 1.21612 0.94227 0.86376 0.96355 1.22615 0.96212 0.92081 1.01895 0.89126 1.21460 0.84407 0.94319 0.98875 1.45957 1.23405 1.10198 1.56611 1.16521 0.82582 0.82523 0.79614 1.90874 1.52396 1.55000 1.42177 1.22142 0.93921 0.91576 1.05368 1.21567 0.94783 0.96674 1.00203 1.20144 0.98007 0.95966 1.05334 1.22734 0.90078 0.89777 1.00873 1.83918 1.26139 1.38924 1.55991 1.20351 0.88350 1.00322 0.98857 1.21597 0.96866 0.93924 1.02993 1.21651 0.98787 0.96753 0.98849 1.20088 0.94759 0.94749 0.99060 1.23109 0.85473 0.98367 0.90680 0.92459 1.86423 1.19339 1.85241 1.46124 1.21875 0.85272 0.88838 1.01484 0.93652 0.95913 0.93884 0.91002 0.90785 0.75776 0.82307 0.89063 0.89174 0.90260 0.91043 0.91412 0.91001 0.90552 0.90624 0.77688 0.92230 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.38 55.49 0.58 -26.14 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 21.89 29.56 -169.99 -5.02 16.86 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.37 10.27 -15.06 -0.15 -6.53 16 8 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 9 N -0.60 -15.15 3.40 -169.86 -0.58 -15.73 16 10 C 0.14 2.82 6.40 -2.53 -0.02 2.81 16 11 C -0.11 -1.90 2.83 -88.47 -0.25 -2.15 16 12 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 13 C 0.13 2.04 5.12 -4.04 -0.02 2.02 16 14 N -0.71 -10.24 5.40 -61.63 -0.33 -10.58 16 15 C 0.60 9.21 7.79 -12.87 -0.10 9.11 16 16 O -0.53 -9.40 16.87 5.19 0.09 -9.31 16 17 C -0.08 -1.07 7.14 -36.72 -0.26 -1.33 16 18 C -0.11 -1.35 10.60 -39.59 -0.42 -1.77 16 19 C -0.19 -1.98 5.93 -105.05 -0.62 -2.60 16 20 C 0.02 0.19 7.22 -35.11 -0.25 -0.06 16 21 O -0.15 -1.95 10.39 5.54 0.06 -1.90 16 22 C -0.04 -0.29 6.30 -27.57 -0.17 -0.46 16 23 C -0.12 -0.61 5.89 -26.51 -0.16 -0.77 16 24 C -0.12 -0.66 5.91 -26.47 -0.16 -0.82 16 25 C -0.05 -0.35 6.28 -27.68 -0.17 -0.52 16 26 C 0.08 1.56 3.80 -24.90 -0.09 1.47 16 27 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 28 O -0.57 -9.84 13.39 -35.23 -0.47 -10.31 16 29 C 0.15 3.58 5.17 -2.92 -0.02 3.56 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.02 0.46 8.00 -51.93 -0.42 0.04 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.13 8.10 -51.93 -0.42 0.70 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.41 5.38 8.09 -40.82 -0.33 5.05 16 36 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.40 8.11 -51.93 -0.42 -0.03 16 41 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.38 5.05 9.12 45.56 0.42 5.47 16 46 H 0.06 1.59 7.22 -51.93 -0.37 1.22 16 47 H 0.04 1.14 7.62 -51.93 -0.40 0.75 16 LS Contribution 382.73 15.07 5.77 5.77 Total: -1.00 -33.44 382.73 -9.44 -42.88 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.56 Total: 6.76 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -2.97 Total: 1.69 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.34 Total: -52.44 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.33 Total: -21.52 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.44 -9.44 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958134253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.451 kcal (2) G-P(sol) polarization free energy of solvation -33.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.35 seconds