Wall clock time and date at job start Tue Mar 31 2020 21:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 120.00120 * 2 1 4 4 H 1.48502 * 109.46896 * 274.98829 * 3 2 1 5 5 H 1.48501 * 109.46951 * 34.98189 * 3 2 1 6 6 H 1.48492 * 109.47136 * 154.98368 * 3 2 1 7 7 C 1.38813 * 120.00341 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00469 * 187.02689 * 7 2 1 9 9 N 1.36935 * 119.99748 * 7.02995 * 7 2 1 10 10 C 1.47424 * 125.65133 * 174.82743 * 9 7 2 11 11 C 1.54912 * 104.93008 * 204.15523 * 10 9 7 12 12 H 1.09001 * 111.00319 * 81.04529 * 11 10 9 13 13 C 1.53001 * 111.00302 * 204.85761 * 11 10 9 14 14 N 1.46498 * 109.47279 * 293.54488 * 13 11 10 15 15 C 1.34771 * 120.00195 * 179.97438 * 14 13 11 16 16 O 1.21703 * 119.99910 * 0.02562 * 15 14 13 17 17 C 1.46656 * 120.00617 * 180.02562 * 15 14 13 18 18 C 1.36767 * 125.96378 * 179.71806 * 17 15 14 19 19 C 1.39654 * 106.53799 * 179.85301 * 18 17 15 20 20 C 1.35572 * 107.40924 * 0.45471 * 19 18 17 21 21 O 1.33493 * 108.61540 * 359.66555 * 20 19 18 22 22 C 1.51003 * 123.78913 * 179.57570 * 20 19 18 23 23 C 1.53316 * 108.41918 * 343.28262 * 22 20 19 24 24 C 1.53111 * 109.55053 * 50.17428 * 23 22 20 25 25 C 1.50694 * 128.12530 * 180.23424 * 19 18 17 26 26 C 1.55159 * 101.58072 * 322.93479 * 11 10 9 27 27 H 1.08997 * 110.71630 * 276.95937 * 26 11 10 28 28 O 1.42900 * 110.71984 * 153.86856 * 26 11 10 29 29 C 1.47292 * 125.79485 * 354.82496 * 9 7 2 30 30 H 0.96997 * 119.99818 * 0.02562 * 1 2 3 31 31 H 1.08992 * 110.36982 * 85.26213 * 10 9 7 32 32 H 1.09001 * 110.36388 * 323.04655 * 10 9 7 33 33 H 1.08995 * 109.47032 * 53.55007 * 13 11 10 34 34 H 1.08995 * 109.46995 * 173.54541 * 13 11 10 35 35 H 0.97008 * 119.99912 * 0.02562 * 14 13 11 36 36 H 1.08005 * 126.73072 * 0.02562 * 18 17 15 37 37 H 1.08999 * 109.67092 * 103.02034 * 22 20 19 38 38 H 1.09003 * 109.67417 * 223.51329 * 22 20 19 39 39 H 1.09005 * 109.45331 * 170.19208 * 23 22 20 40 40 H 1.08996 * 109.46153 * 290.14145 * 23 22 20 41 41 H 1.08998 * 109.48158 * 49.75184 * 24 23 22 42 42 H 1.09003 * 109.47654 * 169.76966 * 24 23 22 43 43 H 1.08997 * 109.68505 * 44.18332 * 25 19 18 44 44 H 1.08993 * 109.71337 * 283.63709 * 25 19 18 45 45 H 0.96695 * 114.00031 * 180.02562 * 28 26 11 46 46 H 1.09004 * 109.85433 * 59.50077 * 29 9 7 47 47 H 1.09001 * 110.00331 * 298.43784 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4121 0.5920 7 6 2.0103 -1.2021 0.0005 8 1 3.0842 -1.2056 0.1150 9 7 1.3334 -2.3836 -0.1441 10 6 1.9494 -3.7172 -0.2687 11 6 0.8930 -4.5775 -1.0060 12 1 0.9282 -4.4028 -2.0813 13 6 1.0768 -6.0628 -0.6884 14 7 2.3470 -6.5288 -1.2502 15 6 2.7224 -7.8136 -1.0930 16 8 2.0061 -8.5868 -0.4847 17 6 3.9942 -8.2800 -1.6549 18 6 4.4950 -9.5495 -1.5640 19 6 5.7177 -9.5437 -2.2388 20 6 5.9198 -8.2855 -2.7015 21 8 4.8782 -7.5291 -2.3479 22 6 7.1420 -7.8638 -3.4814 23 6 8.2323 -8.9235 -3.2838 24 6 7.6522 -10.3132 -3.5605 25 6 6.6746 -10.6903 -2.4402 26 6 -0.4282 -4.0378 -0.3971 27 1 -0.6379 -4.5200 0.5577 28 8 -1.5161 -4.2234 -1.3048 29 6 -0.1305 -2.5364 -0.2012 30 1 -0.4850 0.8400 -0.0004 31 1 2.1563 -4.1332 0.7172 32 1 2.8665 -3.6581 -0.8549 33 1 1.0834 -6.2052 0.3922 34 1 0.2560 -6.6319 -1.1247 35 1 2.9182 -5.9124 -1.7348 36 1 4.0339 -10.3919 -1.0698 37 1 6.8932 -7.7860 -4.5398 38 1 7.4960 -6.8997 -3.1160 39 1 9.0554 -8.7301 -3.9718 40 1 8.5988 -8.8805 -2.2583 41 1 7.1254 -10.3038 -4.5147 42 1 8.4605 -11.0434 -3.5987 43 1 6.1206 -11.5856 -2.7224 44 1 7.2261 -10.8751 -1.5184 45 1 -2.3653 -3.9023 -0.9719 46 1 -0.5297 -1.9667 -1.0404 47 1 -0.5783 -2.1879 0.7295 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958134253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:58 Heat of formation + Delta-G solvation = -83.041455 kcal Electronic energy + Delta-G solvation = -28463.174572 eV Core-core repulsion = 24418.545802 eV Total energy + Delta-G solvation = -4044.628771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 30.80 seconds Orbital eigenvalues (eV) -43.89807 -40.83792 -39.73856 -38.06006 -36.68033 -36.22443 -34.12560 -34.03921 -31.78438 -31.10716 -30.27208 -29.25264 -27.37382 -25.84864 -24.54580 -23.60200 -22.81381 -22.29458 -21.75798 -21.38679 -20.04739 -19.07359 -18.74972 -18.22786 -17.66596 -17.22790 -17.04961 -16.73763 -16.36991 -15.89142 -15.73006 -15.48939 -15.03495 -14.78851 -14.69075 -14.48040 -14.44483 -14.09892 -13.98508 -13.76495 -13.71540 -13.50483 -13.23307 -13.14233 -13.07444 -12.75258 -12.50431 -12.30611 -11.95810 -11.82139 -11.76645 -11.73846 -11.68324 -11.45110 -11.34883 -10.85011 -10.74843 -10.73986 -10.30896 -9.36275 -8.95870 -7.89946 -5.25182 -0.05999 1.25750 1.45223 1.47046 1.49388 1.55871 2.03329 2.05113 2.46250 3.20959 3.29275 3.45378 3.52562 3.66539 3.74413 3.77174 3.84983 4.00424 4.10562 4.12959 4.17993 4.36882 4.38195 4.42023 4.48764 4.56868 4.60137 4.67908 4.70413 4.82457 4.89202 4.90901 4.93431 5.03159 5.08630 5.13770 5.20292 5.23094 5.28574 5.37551 5.45452 5.48127 5.52435 5.68338 5.83404 6.13747 6.33905 6.87721 6.90324 7.04271 7.70775 8.35241 9.21043 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.002505 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.127047 B =11173.426671 C =12849.982729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.244 4.244 8 H 0.086 0.914 9 N -0.625 5.625 10 C 0.139 3.861 11 C -0.091 4.091 12 H 0.085 0.915 13 C 0.146 3.854 14 N -0.707 5.707 15 C 0.604 3.396 16 O -0.558 6.558 17 C -0.110 4.110 18 C -0.111 4.111 19 C -0.201 4.201 20 C 0.019 3.981 21 O -0.166 6.166 22 C -0.045 4.045 23 C -0.114 4.114 24 C -0.121 4.121 25 C -0.051 4.051 26 C 0.099 3.901 27 H 0.079 0.921 28 O -0.569 6.569 29 C 0.159 3.841 30 H 0.248 0.752 31 H 0.030 0.970 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.413 0.587 36 H 0.164 0.836 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.394 0.606 46 H 0.022 0.978 47 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.846 -21.263 -7.687 27.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.373 4.373 8 H 0.104 0.896 9 N -0.352 5.352 10 C 0.014 3.986 11 C -0.110 4.110 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.357 5.357 15 C 0.391 3.609 16 O -0.439 6.439 17 C -0.161 4.161 18 C -0.131 4.131 19 C -0.202 4.202 20 C -0.034 4.034 21 O -0.062 6.062 22 C -0.081 4.081 23 C -0.151 4.151 24 C -0.158 4.158 25 C -0.088 4.088 26 C 0.038 3.962 27 H 0.097 0.903 28 O -0.377 6.377 29 C 0.034 3.966 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.181 0.819 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.244 0.756 46 H 0.040 0.960 47 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 14.694 -21.511 -7.656 27.153 hybrid contribution -0.542 1.805 0.503 1.950 sum 14.151 -19.706 -7.154 25.294 Atomic orbital electron populations 1.70161 1.06361 1.25433 1.57856 1.25692 0.96639 1.01128 1.02362 0.85057 0.77923 0.79076 0.77274 1.21421 1.22165 1.19051 1.19468 0.91726 0.83605 1.42507 0.89640 1.44666 1.02133 1.02214 1.86198 1.21757 0.95149 0.84566 0.97119 1.22410 0.94590 0.92975 1.01060 0.89648 1.21240 0.85051 0.92480 0.99008 1.45859 1.23101 1.10240 1.56488 1.16671 0.82922 0.82224 0.79045 1.90844 1.53622 1.55717 1.43761 1.21853 0.94230 0.92320 1.07686 1.21839 0.95418 0.96261 0.99601 1.20540 0.97815 0.97114 1.04726 1.23594 0.90044 0.89863 0.99921 1.83897 1.26671 1.39418 1.56189 1.20629 0.87201 1.01279 0.99030 1.21637 0.96742 0.93189 1.03526 1.21670 0.98880 0.97357 0.97927 1.20224 0.94605 0.93722 1.00232 1.22871 0.86503 0.94733 0.92071 0.90342 1.86392 1.20056 1.85028 1.46175 1.21657 0.84651 0.91993 0.98334 0.94296 0.95209 0.92884 0.90855 0.90502 0.75072 0.81885 0.87678 0.88508 0.87987 0.91297 0.91481 0.89055 0.89938 0.89894 0.75647 0.95991 0.96865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.80 10.38 21.65 0.22 -56.58 16 2 C -0.07 -3.68 5.48 84.86 0.46 -3.22 16 3 Si 0.98 45.43 29.56 68.60 2.03 47.46 16 4 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.24 -13.59 10.27 84.03 0.86 -12.72 16 8 H 0.09 4.52 7.84 -2.91 -0.02 4.49 16 9 N -0.62 -31.80 3.40 -691.31 -2.35 -34.15 16 10 C 0.14 5.50 6.40 86.86 0.56 6.05 16 11 C -0.09 -3.09 2.83 -9.40 -0.03 -3.12 16 12 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 13 C 0.15 4.31 5.12 86.38 0.44 4.76 16 14 N -0.71 -19.86 5.40 -467.12 -2.52 -22.38 16 15 C 0.60 18.39 7.79 86.44 0.67 19.06 16 16 O -0.56 -19.97 16.87 -4.36 -0.07 -20.05 16 17 C -0.11 -2.96 7.14 24.12 0.17 -2.79 16 18 C -0.11 -2.62 10.60 22.27 0.24 -2.38 16 19 C -0.20 -3.83 5.93 -20.14 -0.12 -3.95 16 20 C 0.02 0.36 7.22 25.16 0.18 0.54 16 21 O -0.17 -4.09 10.39 -3.10 -0.03 -4.12 16 22 C -0.04 -0.50 6.30 30.05 0.19 -0.31 16 23 C -0.11 -0.83 5.89 30.74 0.18 -0.65 16 24 C -0.12 -0.93 5.91 30.76 0.18 -0.75 16 25 C -0.05 -0.60 6.28 29.98 0.19 -0.42 16 26 C 0.10 3.62 3.80 31.78 0.12 3.74 16 27 H 0.08 2.60 8.04 -2.39 -0.02 2.58 16 28 O -0.57 -19.23 13.39 -148.98 -1.99 -21.23 16 29 C 0.16 7.77 5.17 86.68 0.45 8.22 16 30 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.03 1.16 8.00 -2.39 -0.02 1.14 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.41 10.61 8.09 -92.70 -0.75 9.86 16 36 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 37 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 40 H 0.07 0.57 8.11 -2.39 -0.02 0.55 16 41 H 0.07 0.55 8.11 -2.39 -0.02 0.53 16 42 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.39 10.22 9.12 -74.06 -0.68 9.54 16 46 H 0.02 1.22 7.22 -2.38 -0.02 1.20 16 47 H 0.01 0.71 7.62 -2.39 -0.02 0.69 16 Total: -1.00 -73.54 382.73 -0.40 -73.94 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.43 Total: 25.05 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 4.75 Total: 12.05 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -4.65 Total: -113.12 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -2.10 Total: -45.39 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -73.54 -0.40 -73.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958134253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.100 kcal (2) G-P(sol) polarization free energy of solvation -73.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 30.80 seconds