Wall clock time and date at job start Tue Mar 31 2020 21:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00456 * 2 1 4 4 H 1.48507 * 109.47081 * 264.98937 * 3 2 1 5 5 H 1.48502 * 109.47308 * 144.98913 * 3 2 1 6 6 H 1.48499 * 109.47100 * 24.98684 * 3 2 1 7 7 C 1.38812 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00054 * 187.37604 * 7 2 1 9 9 N 1.36941 * 120.00565 * 7.38012 * 7 2 1 10 10 C 1.47021 * 125.64137 * 6.32996 * 9 7 2 11 11 C 1.54340 * 107.26384 * 178.85109 * 10 9 7 12 12 H 1.08998 * 110.84923 * 219.67449 * 11 10 9 13 13 O 1.42902 * 110.66092 * 96.52489 * 11 10 9 14 14 C 1.55153 * 103.01975 * 338.14806 * 11 10 9 15 15 H 1.09002 * 111.00288 * 277.22868 * 14 11 10 16 16 C 1.52995 * 111.03887 * 153.39433 * 14 11 10 17 17 N 1.46494 * 109.47606 * 181.32929 * 16 14 11 18 18 C 1.34773 * 120.00561 * 179.97438 * 17 16 14 19 19 O 1.21694 * 119.99992 * 359.97438 * 18 17 16 20 20 C 1.46658 * 120.00443 * 179.97438 * 18 17 16 21 21 C 1.36764 * 125.96098 * 180.02562 * 20 18 17 22 22 C 1.39655 * 106.53637 * 179.97438 * 21 20 18 23 23 C 1.35567 * 107.41304 * 0.02562 * 22 21 20 24 24 O 1.33503 * 108.61134 * 359.69504 * 23 22 21 25 25 C 1.51007 * 123.79319 * 179.89014 * 23 22 21 26 26 C 1.53324 * 108.41542 * 343.25772 * 25 23 22 27 27 C 1.53114 * 109.55598 * 50.17305 * 26 25 23 28 28 C 1.50701 * 128.12370 * 180.08422 * 22 21 20 29 29 C 1.47414 * 125.65304 * 186.64665 * 9 7 2 30 30 H 0.97004 * 119.99432 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.88851 * 298.40020 * 10 9 7 32 32 H 1.09007 * 109.88284 * 59.56743 * 10 9 7 33 33 H 0.96699 * 114.00219 * 66.41973 * 13 11 10 34 34 H 1.08999 * 109.46972 * 301.32961 * 16 14 11 35 35 H 1.09000 * 109.47103 * 61.32501 * 16 14 11 36 36 H 0.97009 * 119.99744 * 359.97438 * 17 16 14 37 37 H 1.08004 * 126.73328 * 0.02562 * 21 20 18 38 38 H 1.09002 * 109.67518 * 223.52758 * 25 23 22 39 39 H 1.08999 * 109.70495 * 103.00520 * 25 23 22 40 40 H 1.09003 * 109.46044 * 290.14936 * 26 25 23 41 41 H 1.09003 * 109.45313 * 170.19717 * 26 25 23 42 42 H 1.08997 * 109.47859 * 169.78311 * 27 26 25 43 43 H 1.08995 * 109.47880 * 49.75737 * 27 26 25 44 44 H 1.08996 * 109.68451 * 283.26518 * 28 22 21 45 45 H 1.09003 * 109.68466 * 43.82481 * 28 22 21 46 46 H 1.09003 * 110.36883 * 322.92426 * 29 9 7 47 47 H 1.09009 * 110.37024 * 85.13900 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6037 1.9851 -1.3948 5 1 3.4909 1.4729 0.8033 6 1 1.3988 2.6809 0.5914 7 6 2.0101 -1.2022 0.0005 8 1 3.0835 -1.2061 0.1206 9 7 1.3339 -2.3833 -0.1513 10 6 -0.0986 -2.5176 -0.4534 11 6 -0.4047 -4.0266 -0.5603 12 1 -1.1007 -4.2245 -1.3754 13 8 -0.9211 -4.5251 0.6754 14 6 0.9858 -4.6447 -0.8634 15 1 1.2192 -4.5792 -1.9261 16 6 1.0608 -6.0932 -0.3768 17 7 2.3952 -6.6320 -0.6509 18 6 2.6941 -7.9001 -0.3056 19 8 1.8555 -8.5974 0.2344 20 6 4.0298 -8.4396 -0.5805 21 6 4.4623 -9.7028 -0.2842 22 6 5.7871 -9.7815 -0.7191 23 6 6.1097 -8.5796 -1.2569 24 8 5.0455 -7.7774 -1.1764 25 6 7.4642 -8.2574 -1.8414 26 6 8.4665 -9.3081 -1.3493 27 6 7.8992 -10.7098 -1.5900 28 6 6.7263 -10.9569 -0.6328 29 6 1.9203 -3.7306 -0.0323 30 1 -0.4849 0.8401 0.0004 31 1 -0.6897 -2.0733 0.3473 32 1 -0.3254 -2.0274 -1.4002 33 1 -1.7889 -4.1696 0.9110 34 1 0.8688 -6.1267 0.6956 35 1 0.3134 -6.6909 -0.8985 36 1 3.0638 -6.0761 -1.0810 37 1 3.8912 -10.4860 0.1920 38 1 7.7796 -7.2671 -1.5127 39 1 7.4104 -8.2829 -2.9297 40 1 8.6464 -9.1674 -0.2835 41 1 9.4046 -9.1978 -1.8933 42 1 8.6769 -11.4523 -1.4111 43 1 7.5509 -10.7890 -2.6197 44 1 7.0989 -11.0551 0.3868 45 1 6.2021 -11.8678 -0.9220 46 1 2.9289 -3.7432 -0.4456 47 1 1.9344 -4.0475 1.0106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958134254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:07 Heat of formation + Delta-G solvation = -57.961011 kcal Electronic energy + Delta-G solvation = -28561.055571 eV Core-core repulsion = 24517.514369 eV Total energy + Delta-G solvation = -4043.541201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.00570 -39.53962 -38.24201 -37.46917 -35.00087 -34.60506 -33.26953 -32.18047 -30.59500 -30.15175 -29.13750 -27.72064 -25.74735 -24.56876 -23.45227 -22.74773 -21.94630 -20.90351 -20.26087 -19.84972 -19.08883 -17.93748 -17.35030 -16.75214 -16.51291 -16.04186 -15.74816 -15.19104 -14.84165 -14.80164 -14.27876 -14.13808 -14.07438 -13.85792 -13.69903 -13.36428 -13.14938 -13.07088 -12.87349 -12.67222 -12.59462 -12.53845 -11.87190 -11.49874 -11.32824 -11.29007 -11.22755 -10.95980 -10.83795 -10.63250 -10.50051 -10.36807 -10.05895 -9.95409 -9.86689 -9.77842 -9.21080 -9.02452 -8.67078 -8.48372 -6.86710 -5.75187 -3.10170 0.94332 2.11696 2.42028 3.17500 3.21342 3.37830 3.42739 3.44593 4.24179 4.35508 4.41308 4.45528 4.51418 4.69773 4.73296 4.87901 5.03195 5.06806 5.09830 5.11358 5.30870 5.36575 5.37803 5.42672 5.49352 5.52814 5.54637 5.57624 5.67673 5.76221 5.81650 5.86590 5.89013 6.02251 6.07222 6.24897 6.35425 6.37220 6.42162 6.57695 6.75670 6.89017 7.26235 7.51249 7.54574 7.72227 8.11278 8.19206 8.24663 9.16102 9.77502 10.43407 11.35589 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.002506 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.215485 B =11168.475505 C =12862.549908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.601 5.601 10 C 0.148 3.852 11 C 0.085 3.915 12 H 0.057 0.943 13 O -0.563 6.563 14 C -0.110 4.110 15 H 0.089 0.911 16 C 0.139 3.861 17 N -0.714 5.714 18 C 0.601 3.399 19 O -0.525 6.525 20 C -0.077 4.077 21 C -0.113 4.113 22 C -0.193 4.193 23 C 0.017 3.983 24 O -0.155 6.155 25 C -0.041 4.041 26 C -0.116 4.116 27 C -0.123 4.123 28 C -0.050 4.050 29 C 0.144 3.856 30 H 0.252 0.748 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.376 0.624 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.405 0.595 37 H 0.159 0.841 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.036 0.964 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.513 -20.528 -5.095 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.023 3.977 11 C 0.025 3.975 12 H 0.075 0.925 13 O -0.369 6.369 14 C -0.130 4.130 15 H 0.107 0.893 16 C 0.016 3.984 17 N -0.364 5.364 18 C 0.386 3.614 19 O -0.403 6.403 20 C -0.129 4.129 21 C -0.133 4.133 22 C -0.194 4.194 23 C -0.036 4.036 24 O -0.050 6.050 25 C -0.078 4.078 26 C -0.154 4.154 27 C -0.160 4.160 28 C -0.087 4.087 29 C 0.018 3.982 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.223 0.777 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.240 0.760 37 H 0.177 0.823 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.055 0.945 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 12.372 -20.776 -4.796 24.651 hybrid contribution 0.081 1.517 -0.191 1.531 sum 12.453 -19.258 -4.986 23.470 Atomic orbital electron populations 1.69925 1.04961 1.25129 1.56978 1.24811 0.95712 0.97786 1.02231 0.86115 0.78593 0.83287 0.77639 1.21566 1.20698 1.21692 1.19057 0.90905 0.82563 1.43070 0.90422 1.44379 1.05190 0.99938 1.83219 1.21912 0.86583 0.88677 1.00561 1.23070 0.93009 0.96034 0.85407 0.92513 1.86401 1.39144 1.70692 1.40656 1.22674 0.96828 0.92962 1.00498 0.89278 1.21270 0.81802 0.92852 1.02469 1.46033 1.16446 1.12778 1.61121 1.16518 0.83734 0.82101 0.79014 1.90876 1.46878 1.59075 1.43474 1.22189 0.89639 0.93501 1.07575 1.21567 0.94672 0.96207 1.00895 1.20143 0.95648 0.96867 1.06754 1.22724 0.89402 0.89412 1.02058 1.83916 1.19194 1.40528 1.61374 1.20345 0.85976 1.00901 1.00618 1.21600 0.97567 0.93898 1.02327 1.21649 0.97583 0.96826 0.99967 1.20091 0.93875 0.94560 1.00135 1.21569 0.94484 0.85847 0.96347 0.93726 0.91467 0.94530 0.77683 0.89775 0.91450 0.75990 0.82316 0.89201 0.89104 0.91036 0.90275 0.91010 0.91432 0.90621 0.90554 0.94549 0.95641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.81 10.48 55.49 0.58 -26.23 16 2 C -0.01 -0.26 5.45 -17.43 -0.09 -0.35 16 3 Si 0.91 22.02 29.56 -169.99 -5.02 17.00 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.33 10.26 -15.06 -0.15 -6.49 16 8 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 9 N -0.60 -15.26 3.39 -170.06 -0.58 -15.84 16 10 C 0.15 3.48 5.19 -3.06 -0.02 3.46 16 11 C 0.08 1.55 4.09 -24.89 -0.10 1.45 16 12 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 13 O -0.56 -9.92 12.09 -35.23 -0.43 -10.34 16 14 C -0.11 -1.89 3.03 -88.48 -0.27 -2.16 16 15 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 16 C 0.14 2.22 4.74 -4.05 -0.02 2.20 16 17 N -0.71 -10.50 5.40 -61.63 -0.33 -10.83 16 18 C 0.60 9.43 7.79 -12.86 -0.10 9.33 16 19 O -0.52 -9.66 16.86 5.19 0.09 -9.58 16 20 C -0.08 -1.07 7.14 -36.72 -0.26 -1.33 16 21 C -0.11 -1.39 10.60 -39.59 -0.42 -1.81 16 22 C -0.19 -2.01 5.93 -105.05 -0.62 -2.63 16 23 C 0.02 0.18 7.22 -35.11 -0.25 -0.07 16 24 O -0.15 -1.98 10.39 5.53 0.06 -1.92 16 25 C -0.04 -0.29 6.30 -27.56 -0.17 -0.46 16 26 C -0.12 -0.62 5.89 -26.50 -0.16 -0.78 16 27 C -0.12 -0.67 5.91 -26.47 -0.16 -0.83 16 28 C -0.05 -0.36 6.28 -27.68 -0.17 -0.53 16 29 C 0.14 2.99 6.40 -2.54 -0.02 2.97 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.07 1.77 6.92 -51.93 -0.36 1.41 16 32 H 0.04 0.93 7.92 -51.93 -0.41 0.52 16 33 H 0.38 5.24 9.12 45.56 0.42 5.66 16 34 H 0.08 1.52 7.43 -51.93 -0.39 1.14 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.41 5.40 8.09 -40.82 -0.33 5.07 16 37 H 0.16 1.80 8.06 -52.48 -0.42 1.38 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.41 8.11 -51.93 -0.42 -0.02 16 41 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.03 0.57 8.01 -51.92 -0.42 0.16 16 LS Contribution 381.05 15.07 5.74 5.74 Total: -1.00 -33.74 381.05 -9.41 -43.15 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -6.53 Total: 6.88 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.99 Total: 1.97 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.33 Total: -52.89 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.28 Total: -21.84 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.74 -9.41 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958134254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.814 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds