Wall clock time and date at job start Tue Mar 31 2020 21:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00456 * 2 1 4 4 H 1.48507 * 109.47081 * 264.98937 * 3 2 1 5 5 H 1.48502 * 109.47308 * 144.98913 * 3 2 1 6 6 H 1.48499 * 109.47100 * 24.98684 * 3 2 1 7 7 C 1.38812 * 119.99440 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00054 * 187.37604 * 7 2 1 9 9 N 1.36941 * 120.00565 * 7.38012 * 7 2 1 10 10 C 1.47021 * 125.64137 * 6.32996 * 9 7 2 11 11 C 1.54340 * 107.26384 * 178.85109 * 10 9 7 12 12 H 1.08998 * 110.84923 * 219.67449 * 11 10 9 13 13 O 1.42902 * 110.66092 * 96.52489 * 11 10 9 14 14 C 1.55153 * 103.01975 * 338.14806 * 11 10 9 15 15 H 1.09002 * 111.00288 * 277.22868 * 14 11 10 16 16 C 1.52995 * 111.03887 * 153.39433 * 14 11 10 17 17 N 1.46494 * 109.47606 * 181.32929 * 16 14 11 18 18 C 1.34773 * 120.00561 * 179.97438 * 17 16 14 19 19 O 1.21694 * 119.99992 * 359.97438 * 18 17 16 20 20 C 1.46658 * 120.00443 * 179.97438 * 18 17 16 21 21 C 1.36764 * 125.96098 * 180.02562 * 20 18 17 22 22 C 1.39655 * 106.53637 * 179.97438 * 21 20 18 23 23 C 1.35567 * 107.41304 * 0.02562 * 22 21 20 24 24 O 1.33503 * 108.61134 * 359.69504 * 23 22 21 25 25 C 1.51007 * 123.79319 * 179.89014 * 23 22 21 26 26 C 1.53324 * 108.41542 * 343.25772 * 25 23 22 27 27 C 1.53114 * 109.55598 * 50.17305 * 26 25 23 28 28 C 1.50701 * 128.12370 * 180.08422 * 22 21 20 29 29 C 1.47414 * 125.65304 * 186.64665 * 9 7 2 30 30 H 0.97004 * 119.99432 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.88851 * 298.40020 * 10 9 7 32 32 H 1.09007 * 109.88284 * 59.56743 * 10 9 7 33 33 H 0.96699 * 114.00219 * 66.41973 * 13 11 10 34 34 H 1.08999 * 109.46972 * 301.32961 * 16 14 11 35 35 H 1.09000 * 109.47103 * 61.32501 * 16 14 11 36 36 H 0.97009 * 119.99744 * 359.97438 * 17 16 14 37 37 H 1.08004 * 126.73328 * 0.02562 * 21 20 18 38 38 H 1.09002 * 109.67518 * 223.52758 * 25 23 22 39 39 H 1.08999 * 109.70495 * 103.00520 * 25 23 22 40 40 H 1.09003 * 109.46044 * 290.14936 * 26 25 23 41 41 H 1.09003 * 109.45313 * 170.19717 * 26 25 23 42 42 H 1.08997 * 109.47859 * 169.78311 * 27 26 25 43 43 H 1.08995 * 109.47880 * 49.75737 * 27 26 25 44 44 H 1.08996 * 109.68451 * 283.26518 * 28 22 21 45 45 H 1.09003 * 109.68466 * 43.82481 * 28 22 21 46 46 H 1.09003 * 110.36883 * 322.92426 * 29 9 7 47 47 H 1.09009 * 110.37024 * 85.13900 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6037 1.9851 -1.3948 5 1 3.4909 1.4729 0.8033 6 1 1.3988 2.6809 0.5914 7 6 2.0101 -1.2022 0.0005 8 1 3.0835 -1.2061 0.1206 9 7 1.3339 -2.3833 -0.1513 10 6 -0.0986 -2.5176 -0.4534 11 6 -0.4047 -4.0266 -0.5603 12 1 -1.1007 -4.2245 -1.3754 13 8 -0.9211 -4.5251 0.6754 14 6 0.9858 -4.6447 -0.8634 15 1 1.2192 -4.5792 -1.9261 16 6 1.0608 -6.0932 -0.3768 17 7 2.3952 -6.6320 -0.6509 18 6 2.6941 -7.9001 -0.3056 19 8 1.8555 -8.5974 0.2344 20 6 4.0298 -8.4396 -0.5805 21 6 4.4623 -9.7028 -0.2842 22 6 5.7871 -9.7815 -0.7191 23 6 6.1097 -8.5796 -1.2569 24 8 5.0455 -7.7774 -1.1764 25 6 7.4642 -8.2574 -1.8414 26 6 8.4665 -9.3081 -1.3493 27 6 7.8992 -10.7098 -1.5900 28 6 6.7263 -10.9569 -0.6328 29 6 1.9203 -3.7306 -0.0323 30 1 -0.4849 0.8401 0.0004 31 1 -0.6897 -2.0733 0.3473 32 1 -0.3254 -2.0274 -1.4002 33 1 -1.7889 -4.1696 0.9110 34 1 0.8688 -6.1267 0.6956 35 1 0.3134 -6.6909 -0.8985 36 1 3.0638 -6.0761 -1.0810 37 1 3.8912 -10.4860 0.1920 38 1 7.7796 -7.2671 -1.5127 39 1 7.4104 -8.2829 -2.9297 40 1 8.6464 -9.1674 -0.2835 41 1 9.4046 -9.1978 -1.8933 42 1 8.6769 -11.4523 -1.4111 43 1 7.5509 -10.7890 -2.6197 44 1 7.0989 -11.0551 0.3868 45 1 6.2021 -11.8678 -0.9220 46 1 2.9289 -3.7432 -0.4456 47 1 1.9344 -4.0475 1.0106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958134254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:38 Heat of formation + Delta-G solvation = -81.935176 kcal Electronic energy + Delta-G solvation = -28562.095168 eV Core-core repulsion = 24517.514369 eV Total energy + Delta-G solvation = -4044.580799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 29.40 seconds Orbital eigenvalues (eV) -43.89716 -40.83396 -39.77883 -38.05912 -36.43713 -36.21038 -34.10072 -33.97944 -31.75326 -31.10450 -30.28556 -29.36149 -27.36969 -25.87467 -24.55922 -23.60185 -22.81365 -22.26127 -21.70783 -21.24161 -20.02965 -19.14610 -18.92665 -18.08922 -17.65161 -17.08323 -16.90582 -16.78677 -16.27879 -15.80495 -15.64054 -15.38081 -15.23246 -14.85805 -14.73460 -14.48781 -14.40330 -14.29248 -14.03936 -13.76464 -13.57995 -13.50339 -13.25577 -13.08258 -13.03175 -12.71806 -12.35601 -12.10795 -11.95742 -11.82329 -11.76679 -11.73687 -11.72692 -11.45108 -11.33908 -10.86337 -10.74773 -10.68798 -10.27822 -9.36086 -8.92366 -7.87133 -5.24700 -0.05674 1.25801 1.45066 1.47100 1.49710 1.55162 2.03554 2.08673 2.47429 3.25445 3.31889 3.47163 3.52164 3.71322 3.76833 3.87538 3.90711 3.97360 4.00520 4.13004 4.18295 4.38209 4.39766 4.48419 4.54873 4.59437 4.60201 4.70169 4.78556 4.84278 4.89934 4.93420 4.95337 5.03114 5.08860 5.17287 5.21782 5.23185 5.32923 5.33595 5.45479 5.51789 5.52470 5.70188 5.83651 6.16727 6.35892 6.90766 6.94916 7.06490 7.73213 8.38110 9.21697 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.002506 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.215485 B =11168.475505 C =12862.549908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.979 3.021 4 H -0.283 1.283 5 H -0.271 1.271 6 H -0.295 1.295 7 C -0.245 4.245 8 H 0.081 0.919 9 N -0.622 5.622 10 C 0.153 3.847 11 C 0.098 3.902 12 H 0.091 0.909 13 O -0.571 6.571 14 C -0.093 4.093 15 H 0.109 0.891 16 C 0.153 3.847 17 N -0.708 5.708 18 C 0.602 3.398 19 O -0.560 6.560 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.201 4.201 23 C 0.019 3.981 24 O -0.165 6.165 25 C -0.044 4.044 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.051 4.051 29 C 0.142 3.858 30 H 0.248 0.752 31 H 0.032 0.968 32 H 0.011 0.989 33 H 0.392 0.608 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.413 0.587 37 H 0.163 0.837 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.048 0.952 47 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.830 -21.833 -6.287 27.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.209 1.209 5 H -0.196 1.196 6 H -0.221 1.221 7 C -0.373 4.373 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.028 3.972 11 C 0.038 3.962 12 H 0.109 0.891 13 O -0.379 6.379 14 C -0.113 4.113 15 H 0.127 0.873 16 C 0.030 3.970 17 N -0.358 5.358 18 C 0.389 3.611 19 O -0.441 6.441 20 C -0.160 4.160 21 C -0.132 4.132 22 C -0.202 4.202 23 C -0.034 4.034 24 O -0.061 6.061 25 C -0.081 4.081 26 C -0.151 4.151 27 C -0.158 4.158 28 C -0.088 4.088 29 C 0.017 3.983 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.029 0.971 33 H 0.241 0.759 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.249 0.751 37 H 0.180 0.820 38 H 0.115 0.885 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.067 0.933 47 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 14.708 -22.096 -5.992 27.211 hybrid contribution -0.563 1.878 0.212 1.972 sum 14.146 -20.218 -5.780 25.343 Atomic orbital electron populations 1.70140 1.06268 1.25391 1.57972 1.25661 0.96643 1.01062 1.02492 0.85084 0.77513 0.78919 0.77747 1.20930 1.19585 1.22144 1.19441 0.91435 0.83901 1.42567 0.90128 1.44703 1.06184 1.00950 1.83017 1.21764 0.85460 0.92192 0.97817 1.22923 0.94383 0.92201 0.86709 0.89147 1.86383 1.40475 1.70413 1.40592 1.22570 0.95078 0.92700 1.00907 0.87280 1.21006 0.82776 0.92079 1.01134 1.45917 1.16168 1.12720 1.60964 1.16699 0.84231 0.81876 0.78246 1.90843 1.48203 1.59894 1.45155 1.21855 0.89585 0.94278 1.10306 1.21837 0.95711 0.95716 0.99976 1.20539 0.95264 0.98119 1.06273 1.23603 0.89854 0.89212 1.00753 1.83895 1.19575 1.41094 1.61556 1.20630 0.84126 1.01917 1.01410 1.21643 0.97902 0.93152 1.02436 1.21667 0.97272 0.97476 0.99376 1.20230 0.93986 0.93404 1.01182 1.21660 0.95876 0.84621 0.96164 0.94315 0.94993 0.97076 0.75874 0.91970 0.90344 0.75111 0.81984 0.88538 0.87543 0.91392 0.87933 0.89063 0.91390 0.89988 0.89911 0.93332 0.97328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.61 10.48 21.65 0.23 -56.38 16 2 C -0.07 -3.72 5.45 84.86 0.46 -3.26 16 3 Si 0.98 45.65 29.56 68.60 2.03 47.68 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 7 C -0.24 -13.77 10.26 84.03 0.86 -12.90 16 8 H 0.08 4.35 7.84 -2.91 -0.02 4.33 16 9 N -0.62 -32.05 3.39 -691.95 -2.35 -34.40 16 10 C 0.15 7.35 5.19 86.73 0.45 7.80 16 11 C 0.10 3.49 4.09 31.79 0.13 3.62 16 12 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 13 O -0.57 -19.74 12.09 -148.98 -1.80 -21.54 16 14 C -0.09 -3.09 3.03 -9.41 -0.03 -3.12 16 15 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 16 C 0.15 4.77 4.74 86.38 0.41 5.18 16 17 N -0.71 -20.47 5.40 -467.13 -2.52 -22.99 16 18 C 0.60 19.00 7.79 86.44 0.67 19.67 16 19 O -0.56 -20.93 16.86 -4.33 -0.07 -21.00 16 20 C -0.11 -3.01 7.14 24.12 0.17 -2.84 16 21 C -0.11 -2.72 10.60 22.27 0.24 -2.48 16 22 C -0.20 -3.90 5.93 -20.14 -0.12 -4.02 16 23 C 0.02 0.37 7.22 25.16 0.18 0.55 16 24 O -0.17 -4.11 10.39 -3.13 -0.03 -4.15 16 25 C -0.04 -0.50 6.30 30.05 0.19 -0.31 16 26 C -0.11 -0.85 5.89 30.74 0.18 -0.67 16 27 C -0.12 -0.94 5.91 30.76 0.18 -0.76 16 28 C -0.05 -0.62 6.28 29.98 0.19 -0.43 16 29 C 0.14 5.89 6.40 86.86 0.56 6.45 16 30 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.03 1.75 6.92 -2.39 -0.02 1.73 16 32 H 0.01 0.58 7.92 -2.38 -0.02 0.56 16 33 H 0.39 10.70 9.12 -74.06 -0.68 10.02 16 34 H 0.06 2.25 7.43 -2.39 -0.02 2.23 16 35 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.41 10.66 8.09 -92.70 -0.75 9.91 16 37 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.58 8.11 -2.39 -0.02 0.56 16 41 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.07 0.55 8.11 -2.39 -0.02 0.53 16 44 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.01 0.40 8.01 -2.38 -0.02 0.38 16 Total: -1.00 -74.80 381.05 -0.23 -75.03 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.43 Total: 25.29 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 4.73 Total: 12.47 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -4.65 Total: -113.77 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -1.91 Total: -46.70 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -74.80 -0.23 -75.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958134254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.910 kcal (2) G-P(sol) polarization free energy of solvation -74.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 29.40 seconds