Wall clock time and date at job start Tue Mar 31 2020 21:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47398 * 265.21289 * 3 2 1 5 5 H 1.48505 * 109.47087 * 25.21315 * 3 2 1 6 6 H 1.48497 * 109.47418 * 145.20903 * 3 2 1 7 7 C 1.38819 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99487 * 332.96131 * 7 2 1 9 9 N 1.36933 * 120.00112 * 152.96759 * 7 2 1 10 10 C 1.47018 * 125.64784 * 349.71233 * 9 7 2 11 11 C 1.54326 * 107.27077 * 181.02679 * 10 9 7 12 12 H 1.09002 * 110.71842 * 140.55791 * 11 10 9 13 13 O 1.42904 * 110.72002 * 263.65203 * 11 10 9 14 14 C 1.55157 * 102.94369 * 22.19167 * 11 10 9 15 15 H 1.09000 * 110.99869 * 82.57202 * 14 11 10 16 16 C 1.52992 * 111.00817 * 206.42316 * 14 11 10 17 17 N 1.46498 * 109.47405 * 184.99906 * 16 14 11 18 18 C 1.34773 * 120.00288 * 180.02562 * 17 16 14 19 19 O 1.21702 * 119.99702 * 0.02562 * 18 17 16 20 20 C 1.46655 * 120.00311 * 180.02562 * 18 17 16 21 21 C 1.36767 * 125.95651 * 180.02562 * 20 18 17 22 22 C 1.39655 * 106.53350 * 180.02562 * 21 20 18 23 23 C 1.35573 * 107.41393 * 0.03880 * 22 21 20 24 24 O 1.33499 * 108.60995 * 359.66136 * 23 22 21 25 25 C 1.51002 * 123.79575 * 179.90499 * 23 22 21 26 26 C 1.53322 * 108.41442 * 343.27558 * 25 23 22 27 27 C 1.53117 * 109.55377 * 50.17532 * 26 25 23 28 28 C 1.50697 * 128.12810 * 180.14354 * 22 21 20 29 29 C 1.47423 * 125.64945 * 169.41225 * 9 7 2 30 30 H 0.97003 * 120.00055 * 185.05492 * 1 2 3 31 31 H 1.09007 * 109.88511 * 300.44289 * 10 9 7 32 32 H 1.09001 * 109.88234 * 61.45604 * 10 9 7 33 33 H 0.96704 * 113.99795 * 298.54437 * 13 11 10 34 34 H 1.09000 * 109.47324 * 305.00370 * 16 14 11 35 35 H 1.08999 * 109.46874 * 64.99738 * 16 14 11 36 36 H 0.96994 * 119.99768 * 0.02562 * 17 16 14 37 37 H 1.08000 * 126.73983 * 0.04125 * 21 20 18 38 38 H 1.09001 * 109.67232 * 103.00883 * 25 23 22 39 39 H 1.08994 * 109.67616 * 223.50731 * 25 23 22 40 40 H 1.09007 * 109.45344 * 170.19651 * 26 25 23 41 41 H 1.08991 * 109.46264 * 290.14703 * 26 25 23 42 42 H 1.09000 * 109.47958 * 49.74927 * 27 26 25 43 43 H 1.09005 * 109.47604 * 169.77750 * 27 26 25 44 44 H 1.09003 * 109.68485 * 283.24610 * 28 22 21 45 45 H 1.09002 * 109.68534 * 43.79772 * 28 22 21 46 46 H 1.09001 * 110.36532 * 274.74464 * 29 9 7 47 47 H 1.08998 * 110.36633 * 37.06085 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5989 1.9880 -1.3952 5 1 1.4007 2.6798 0.5964 6 1 3.4934 1.4716 0.7988 7 6 2.0103 -1.2022 -0.0005 8 1 1.5588 -2.0865 0.4243 9 7 3.2674 -1.2667 -0.5395 10 6 3.9144 -0.2119 -1.3335 11 6 5.3056 -0.7372 -1.7460 12 1 5.5407 -0.4441 -2.7692 13 8 6.3106 -0.2691 -0.8444 14 6 5.1415 -2.2764 -1.6399 15 1 4.6766 -2.6825 -2.5383 16 6 6.4857 -2.9539 -1.3666 17 7 6.3136 -4.4085 -1.3914 18 6 7.3705 -5.2160 -1.1741 19 8 8.4679 -4.7367 -0.9570 20 6 7.1983 -6.6722 -1.1994 21 6 8.1815 -7.6008 -0.9957 22 6 7.5749 -8.8535 -1.1103 23 6 6.2620 -8.6457 -1.3770 24 8 6.0396 -7.3302 -1.4227 25 6 5.2590 -9.7570 -1.5747 26 6 6.0244 -11.0586 -1.8408 27 6 7.1001 -11.2491 -0.7679 28 6 8.2120 -10.2120 -0.9707 29 6 4.1986 -2.4027 -0.4146 30 1 -0.4850 -0.8368 0.0740 31 1 3.3200 0.0006 -2.2221 32 1 4.0199 0.6919 -0.7333 33 1 6.3982 0.6937 -0.8185 34 1 7.2032 -2.6598 -2.1327 35 1 6.8542 -2.6482 -0.3874 36 1 5.4389 -4.7904 -1.5641 37 1 9.2227 -7.4041 -0.7869 38 1 4.6504 -9.8660 -0.6770 39 1 4.6188 -9.5264 -2.4262 40 1 5.3312 -11.8995 -1.8133 41 1 6.4954 -11.0087 -2.8224 42 1 6.6563 -11.1181 0.2190 43 1 7.5195 -12.2520 -0.8479 44 1 8.7746 -10.4483 -1.8739 45 1 8.8802 -10.2175 -0.1096 46 1 4.7662 -2.3277 0.5130 47 1 3.6535 -3.3459 -0.4514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958134255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:12 Heat of formation + Delta-G solvation = -52.037512 kcal Electronic energy + Delta-G solvation = -28614.429520 eV Core-core repulsion = 24571.145181 eV Total energy + Delta-G solvation = -4043.284339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.05592 -39.66437 -38.57962 -37.50738 -35.21018 -34.83015 -33.31758 -32.36440 -30.74426 -30.44530 -29.35127 -28.08434 -26.03637 -24.43394 -23.30319 -22.71433 -21.96326 -21.06884 -20.66875 -19.98719 -19.17944 -18.01318 -17.85376 -16.88325 -16.75992 -16.20376 -15.88158 -15.41825 -15.22471 -14.83364 -14.44952 -14.30039 -14.21985 -13.93799 -13.78952 -13.54157 -13.19883 -13.18658 -13.10892 -12.89468 -12.76136 -12.57734 -12.36301 -11.95130 -11.35996 -11.32616 -11.24217 -11.08704 -10.99179 -10.84289 -10.68042 -10.46644 -10.16942 -9.95391 -9.91421 -9.42685 -9.20158 -9.12993 -8.53790 -8.47661 -7.15023 -6.36818 -3.21866 0.88586 2.06913 2.36500 3.09174 3.12680 3.34471 3.48156 3.65036 4.19899 4.30464 4.37997 4.38251 4.47333 4.55421 4.69517 4.76609 4.82248 5.00722 5.01758 5.07305 5.08616 5.10268 5.15849 5.32889 5.38193 5.41573 5.44928 5.51904 5.58177 5.63858 5.69790 5.73343 5.76373 5.79710 5.83884 6.07723 6.10565 6.20326 6.30277 6.32630 6.45379 6.53380 6.69422 6.75299 7.41736 7.65097 7.88266 8.03100 8.29887 8.99736 9.55023 10.21584 11.11661 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018685 B = 0.002437 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.130361 B =11487.967978 C =12710.967896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.069 2.931 4 H -0.295 1.295 5 H -0.299 1.299 6 H -0.292 1.292 7 C -0.330 4.330 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.088 3.912 11 C 0.102 3.898 12 H 0.068 0.932 13 O -0.558 6.558 14 C -0.110 4.110 15 H 0.095 0.905 16 C 0.140 3.860 17 N -0.715 5.715 18 C 0.602 3.398 19 O -0.524 6.524 20 C -0.079 4.079 21 C -0.111 4.111 22 C -0.193 4.193 23 C 0.018 3.982 24 O -0.155 6.155 25 C -0.042 4.042 26 C -0.116 4.116 27 C -0.123 4.123 28 C -0.049 4.049 29 C 0.142 3.858 30 H 0.263 0.737 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.378 0.622 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.406 0.594 37 H 0.159 0.841 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.030 0.970 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.462 -20.357 -6.013 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.222 4.222 3 Si 0.902 3.098 4 H -0.223 1.223 5 H -0.227 1.227 6 H -0.220 1.220 7 C -0.457 4.457 8 H 0.095 0.905 9 N -0.333 5.333 10 C -0.038 4.038 11 C 0.042 3.958 12 H 0.085 0.915 13 O -0.364 6.364 14 C -0.129 4.129 15 H 0.113 0.887 16 C 0.017 3.983 17 N -0.366 5.366 18 C 0.388 3.612 19 O -0.402 6.402 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.194 4.194 23 C -0.035 4.035 24 O -0.050 6.050 25 C -0.079 4.079 26 C -0.153 4.153 27 C -0.161 4.161 28 C -0.087 4.087 29 C 0.016 3.984 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.225 0.775 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.240 0.760 37 H 0.177 0.823 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.048 0.952 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.718 -18.827 -5.820 25.206 hybrid contribution -0.253 -1.093 0.005 1.122 sum 15.464 -19.920 -5.814 25.879 Atomic orbital electron populations 1.70921 1.05811 1.30014 1.49080 1.25807 0.96369 1.00838 0.99182 0.83731 0.73954 0.76019 0.76053 1.22284 1.22680 1.21957 1.20032 0.88896 0.97244 1.39554 0.90492 1.44750 1.14190 1.14088 1.60258 1.22425 0.92356 0.93267 0.95747 1.22706 0.87656 0.93534 0.91921 0.91463 1.86447 1.57342 1.26850 1.65774 1.22745 0.95322 0.93754 1.01101 0.88707 1.21234 0.96810 0.76795 1.03459 1.46011 1.11458 1.07746 1.71348 1.16509 0.84784 0.82474 0.77463 1.90882 1.25003 1.74222 1.50079 1.22149 0.84284 0.93054 1.13604 1.21573 1.00344 0.90556 1.00716 1.20151 0.93577 0.96158 1.09536 1.22740 0.96231 0.81939 1.02556 1.83913 1.33870 1.18078 1.69184 1.20354 0.94897 0.88884 1.03753 1.21595 0.98044 0.95817 0.99883 1.21657 0.96093 0.98931 0.99407 1.20092 0.97197 0.89025 1.02343 1.21671 0.90518 0.92196 0.94000 0.92674 0.93493 0.94810 0.77474 0.91131 0.89858 0.75953 0.82291 0.88993 0.89251 0.90240 0.91092 0.91358 0.90973 0.90641 0.90511 0.95245 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.64 13.70 55.49 0.76 -27.88 16 2 C -0.02 -0.62 5.43 -17.43 -0.09 -0.72 16 3 Si 1.07 26.68 24.66 -169.99 -4.19 22.49 16 4 H -0.29 -6.82 6.76 56.52 0.38 -6.44 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 6 H -0.29 -7.01 6.71 56.52 0.38 -6.63 16 7 C -0.33 -9.46 10.43 -15.06 -0.16 -9.62 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 N -0.61 -14.81 3.29 -169.94 -0.56 -15.37 16 10 C 0.09 1.86 4.71 -3.06 -0.01 1.84 16 11 C 0.10 1.67 4.08 -24.89 -0.10 1.57 16 12 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 13 O -0.56 -8.83 12.27 -35.23 -0.43 -9.26 16 14 C -0.11 -1.75 2.99 -88.36 -0.26 -2.02 16 15 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 16 C 0.14 2.09 4.60 -4.05 -0.02 2.07 16 17 N -0.72 -9.96 5.50 -61.63 -0.34 -10.30 16 18 C 0.60 9.07 7.79 -12.86 -0.10 8.97 16 19 O -0.52 -9.31 16.86 5.19 0.09 -9.23 16 20 C -0.08 -1.06 7.14 -36.72 -0.26 -1.32 16 21 C -0.11 -1.33 10.60 -39.59 -0.42 -1.75 16 22 C -0.19 -1.95 5.93 -105.05 -0.62 -2.57 16 23 C 0.02 0.19 7.22 -35.11 -0.25 -0.06 16 24 O -0.15 -1.93 10.39 5.54 0.06 -1.87 16 25 C -0.04 -0.28 6.30 -27.57 -0.17 -0.46 16 26 C -0.12 -0.59 5.89 -26.50 -0.16 -0.74 16 27 C -0.12 -0.66 5.91 -26.47 -0.16 -0.82 16 28 C -0.05 -0.34 6.28 -27.68 -0.17 -0.52 16 29 C 0.14 2.86 6.65 -2.41 -0.02 2.85 16 30 H 0.26 8.11 8.73 -40.82 -0.36 7.75 16 31 H 0.05 1.03 7.82 -51.92 -0.41 0.62 16 32 H 0.03 0.76 3.67 -51.93 -0.19 0.57 16 33 H 0.38 4.52 9.10 45.56 0.41 4.94 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.41 7.55 -51.93 -0.39 1.02 16 36 H 0.41 5.09 8.23 -40.82 -0.34 4.76 16 37 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 42 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.03 0.63 7.91 -51.93 -0.41 0.22 16 47 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -35.37 375.96 -8.37 -43.73 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.43 Total: 5.32 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -2.98 Total: -3.30 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.14 Total: -53.55 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.29 Total: -20.36 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: -4.19 Total: 22.49 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.37 -8.37 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958134255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.305 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds