Wall clock time and date at job start Tue Mar 31 2020 21:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00109 * 2 1 4 4 H 1.48501 * 109.47398 * 265.21289 * 3 2 1 5 5 H 1.48505 * 109.47087 * 25.21315 * 3 2 1 6 6 H 1.48497 * 109.47418 * 145.20903 * 3 2 1 7 7 C 1.38819 * 120.00322 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99487 * 332.96131 * 7 2 1 9 9 N 1.36933 * 120.00112 * 152.96759 * 7 2 1 10 10 C 1.47018 * 125.64784 * 349.71233 * 9 7 2 11 11 C 1.54326 * 107.27077 * 181.02679 * 10 9 7 12 12 H 1.09002 * 110.71842 * 140.55791 * 11 10 9 13 13 O 1.42904 * 110.72002 * 263.65203 * 11 10 9 14 14 C 1.55157 * 102.94369 * 22.19167 * 11 10 9 15 15 H 1.09000 * 110.99869 * 82.57202 * 14 11 10 16 16 C 1.52992 * 111.00817 * 206.42316 * 14 11 10 17 17 N 1.46498 * 109.47405 * 184.99906 * 16 14 11 18 18 C 1.34773 * 120.00288 * 180.02562 * 17 16 14 19 19 O 1.21702 * 119.99702 * 0.02562 * 18 17 16 20 20 C 1.46655 * 120.00311 * 180.02562 * 18 17 16 21 21 C 1.36767 * 125.95651 * 180.02562 * 20 18 17 22 22 C 1.39655 * 106.53350 * 180.02562 * 21 20 18 23 23 C 1.35573 * 107.41393 * 0.03880 * 22 21 20 24 24 O 1.33499 * 108.60995 * 359.66136 * 23 22 21 25 25 C 1.51002 * 123.79575 * 179.90499 * 23 22 21 26 26 C 1.53322 * 108.41442 * 343.27558 * 25 23 22 27 27 C 1.53117 * 109.55377 * 50.17532 * 26 25 23 28 28 C 1.50697 * 128.12810 * 180.14354 * 22 21 20 29 29 C 1.47423 * 125.64945 * 169.41225 * 9 7 2 30 30 H 0.97003 * 120.00055 * 185.05492 * 1 2 3 31 31 H 1.09007 * 109.88511 * 300.44289 * 10 9 7 32 32 H 1.09001 * 109.88234 * 61.45604 * 10 9 7 33 33 H 0.96704 * 113.99795 * 298.54437 * 13 11 10 34 34 H 1.09000 * 109.47324 * 305.00370 * 16 14 11 35 35 H 1.08999 * 109.46874 * 64.99738 * 16 14 11 36 36 H 0.96994 * 119.99768 * 0.02562 * 17 16 14 37 37 H 1.08000 * 126.73983 * 0.04125 * 21 20 18 38 38 H 1.09001 * 109.67232 * 103.00883 * 25 23 22 39 39 H 1.08994 * 109.67616 * 223.50731 * 25 23 22 40 40 H 1.09007 * 109.45344 * 170.19651 * 26 25 23 41 41 H 1.08991 * 109.46264 * 290.14703 * 26 25 23 42 42 H 1.09000 * 109.47958 * 49.74927 * 27 26 25 43 43 H 1.09005 * 109.47604 * 169.77750 * 27 26 25 44 44 H 1.09003 * 109.68485 * 283.24610 * 28 22 21 45 45 H 1.09002 * 109.68534 * 43.79772 * 28 22 21 46 46 H 1.09001 * 110.36532 * 274.74464 * 29 9 7 47 47 H 1.08998 * 110.36633 * 37.06085 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5989 1.9880 -1.3952 5 1 1.4007 2.6798 0.5964 6 1 3.4934 1.4716 0.7988 7 6 2.0103 -1.2022 -0.0005 8 1 1.5588 -2.0865 0.4243 9 7 3.2674 -1.2667 -0.5395 10 6 3.9144 -0.2119 -1.3335 11 6 5.3056 -0.7372 -1.7460 12 1 5.5407 -0.4441 -2.7692 13 8 6.3106 -0.2691 -0.8444 14 6 5.1415 -2.2764 -1.6399 15 1 4.6766 -2.6825 -2.5383 16 6 6.4857 -2.9539 -1.3666 17 7 6.3136 -4.4085 -1.3914 18 6 7.3705 -5.2160 -1.1741 19 8 8.4679 -4.7367 -0.9570 20 6 7.1983 -6.6722 -1.1994 21 6 8.1815 -7.6008 -0.9957 22 6 7.5749 -8.8535 -1.1103 23 6 6.2620 -8.6457 -1.3770 24 8 6.0396 -7.3302 -1.4227 25 6 5.2590 -9.7570 -1.5747 26 6 6.0244 -11.0586 -1.8408 27 6 7.1001 -11.2491 -0.7679 28 6 8.2120 -10.2120 -0.9707 29 6 4.1986 -2.4027 -0.4146 30 1 -0.4850 -0.8368 0.0740 31 1 3.3200 0.0006 -2.2221 32 1 4.0199 0.6919 -0.7333 33 1 6.3982 0.6937 -0.8185 34 1 7.2032 -2.6598 -2.1327 35 1 6.8542 -2.6482 -0.3874 36 1 5.4389 -4.7904 -1.5641 37 1 9.2227 -7.4041 -0.7869 38 1 4.6504 -9.8660 -0.6770 39 1 4.6188 -9.5264 -2.4262 40 1 5.3312 -11.8995 -1.8133 41 1 6.4954 -11.0087 -2.8224 42 1 6.6563 -11.1181 0.2190 43 1 7.5195 -12.2520 -0.8479 44 1 8.7746 -10.4483 -1.8739 45 1 8.8802 -10.2175 -0.1096 46 1 4.7662 -2.3277 0.5130 47 1 3.6535 -3.3459 -0.4514 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958134255.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:11 Heat of formation + Delta-G solvation = -79.219193 kcal Electronic energy + Delta-G solvation = -28615.608206 eV Core-core repulsion = 24571.145181 eV Total energy + Delta-G solvation = -4044.463025 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.92458 -40.90830 -39.98223 -38.08398 -36.57349 -36.29995 -34.29191 -34.10296 -32.16196 -31.14827 -30.35135 -29.62311 -27.50675 -25.60856 -24.43283 -23.58379 -22.82486 -22.65004 -21.80848 -21.34962 -20.10310 -19.70425 -18.98046 -18.32186 -17.68468 -17.25022 -17.11090 -16.81145 -16.27650 -16.05569 -15.67074 -15.58114 -15.28826 -15.12797 -14.80942 -14.69129 -14.52095 -14.38313 -14.07094 -14.03303 -13.78760 -13.53274 -13.48257 -13.10127 -12.99423 -12.85274 -12.42100 -12.25371 -11.84665 -11.79014 -11.76024 -11.74710 -11.52246 -11.47412 -11.24598 -10.87028 -10.77126 -10.59893 -10.31126 -9.38818 -9.22054 -8.67859 -5.46042 -0.08501 1.23217 1.34543 1.46953 1.50532 1.68850 2.00600 2.05394 2.48353 2.96907 3.16918 3.28056 3.43839 3.64924 3.67134 3.73145 3.74601 3.83910 3.97975 4.10262 4.14866 4.23571 4.30968 4.37279 4.46318 4.49048 4.57630 4.59751 4.67684 4.71019 4.77998 4.86282 4.87998 4.90863 5.00621 5.01005 5.06818 5.14327 5.18114 5.20706 5.27263 5.43241 5.49947 5.52683 5.80811 6.06631 6.31826 6.78779 6.84899 6.90341 7.42925 8.08583 8.80988 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018685 B = 0.002437 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.130361 B =11487.967978 C =12710.967896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.078 4.078 3 Si 1.112 2.888 4 H -0.262 1.262 5 H -0.307 1.307 6 H -0.279 1.279 7 C -0.323 4.323 8 H 0.043 0.957 9 N -0.627 5.627 10 C 0.075 3.925 11 C 0.114 3.886 12 H 0.111 0.889 13 O -0.568 6.568 14 C -0.094 4.094 15 H 0.115 0.885 16 C 0.153 3.847 17 N -0.710 5.710 18 C 0.603 3.397 19 O -0.558 6.558 20 C -0.110 4.110 21 C -0.111 4.111 22 C -0.200 4.200 23 C 0.018 3.982 24 O -0.166 6.166 25 C -0.045 4.045 26 C -0.113 4.113 27 C -0.122 4.122 28 C -0.051 4.051 29 C 0.139 3.861 30 H 0.249 0.751 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.396 0.604 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.412 0.588 37 H 0.163 0.837 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.016 0.984 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.365 -21.469 -7.572 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.272 4.272 3 Si 0.939 3.061 4 H -0.187 1.187 5 H -0.236 1.236 6 H -0.206 1.206 7 C -0.451 4.451 8 H 0.061 0.939 9 N -0.354 5.354 10 C -0.050 4.050 11 C 0.054 3.946 12 H 0.129 0.871 13 O -0.377 6.377 14 C -0.113 4.113 15 H 0.133 0.867 16 C 0.029 3.971 17 N -0.360 5.360 18 C 0.390 3.610 19 O -0.439 6.439 20 C -0.161 4.161 21 C -0.132 4.132 22 C -0.201 4.201 23 C -0.035 4.035 24 O -0.062 6.062 25 C -0.082 4.082 26 C -0.150 4.150 27 C -0.159 4.159 28 C -0.088 4.088 29 C 0.014 3.986 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.246 0.754 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.248 0.752 37 H 0.181 0.819 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.099 0.901 46 H 0.034 0.966 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 17.646 -19.960 -7.401 27.651 hybrid contribution -0.863 -0.928 0.554 1.383 sum 16.783 -20.888 -6.847 27.656 Atomic orbital electron populations 1.71034 1.07007 1.29211 1.52247 1.27100 0.96381 1.04411 0.99337 0.83177 0.72984 0.71927 0.77962 1.18738 1.23614 1.20609 1.19932 0.90838 0.96021 1.38359 0.93863 1.44845 1.13673 1.16398 1.60479 1.22699 0.94920 0.92469 0.94870 1.22694 0.85044 0.92916 0.93898 0.87122 1.86434 1.56520 1.28770 1.65936 1.22652 0.94683 0.94453 0.99543 0.86744 1.21031 0.96183 0.77130 1.02729 1.45939 1.11649 1.07419 1.70990 1.16673 0.84359 0.83241 0.76700 1.90849 1.26130 1.75082 1.51828 1.21885 0.85236 0.92514 1.16492 1.21843 1.00439 0.91321 0.99573 1.20548 0.93609 0.96913 1.09077 1.23591 0.97407 0.81661 1.00839 1.83893 1.33610 1.19184 1.69560 1.20630 0.94609 0.88352 1.04586 1.21633 0.98244 0.95379 0.99730 1.21679 0.95641 0.99337 0.99287 1.20229 0.97857 0.87633 1.03041 1.21767 0.90479 0.90753 0.95638 0.94203 0.93817 0.95094 0.75357 0.89821 0.91895 0.75184 0.81892 0.88045 0.88318 0.88027 0.91011 0.91749 0.88968 0.89647 0.90060 0.96613 0.94161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.17 13.70 21.65 0.30 -60.87 16 2 C -0.08 -4.67 5.43 84.86 0.46 -4.21 16 3 Si 1.11 53.54 24.66 68.60 1.69 55.23 16 4 H -0.26 -11.12 6.76 99.48 0.67 -10.44 16 5 H -0.31 -15.13 7.11 99.48 0.71 -14.43 16 6 H -0.28 -12.69 6.71 99.48 0.67 -12.03 16 7 C -0.32 -18.96 10.43 84.04 0.88 -18.08 16 8 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 9 N -0.63 -30.45 3.29 -691.55 -2.27 -32.72 16 10 C 0.08 3.01 4.71 86.73 0.41 3.42 16 11 C 0.11 3.36 4.08 31.78 0.13 3.49 16 12 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 13 O -0.57 -16.16 12.27 -148.98 -1.83 -17.99 16 14 C -0.09 -2.80 2.99 -9.33 -0.03 -2.83 16 15 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 16 C 0.15 4.32 4.60 86.38 0.40 4.71 16 17 N -0.71 -19.34 5.50 -467.12 -2.57 -21.91 16 18 C 0.60 18.23 7.79 86.44 0.67 18.90 16 19 O -0.56 -20.00 16.86 -4.35 -0.07 -20.07 16 20 C -0.11 -2.96 7.14 24.12 0.17 -2.79 16 21 C -0.11 -2.64 10.60 22.27 0.24 -2.40 16 22 C -0.20 -3.83 5.93 -20.14 -0.12 -3.95 16 23 C 0.02 0.35 7.22 25.16 0.18 0.53 16 24 O -0.17 -4.09 10.39 -3.09 -0.03 -4.12 16 25 C -0.05 -0.51 6.30 30.05 0.19 -0.32 16 26 C -0.11 -0.81 5.89 30.74 0.18 -0.63 16 27 C -0.12 -0.97 5.91 30.77 0.18 -0.79 16 28 C -0.05 -0.60 6.28 29.98 0.19 -0.41 16 29 C 0.14 5.55 6.65 86.93 0.58 6.13 16 30 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 31 H 0.04 1.79 7.82 -2.38 -0.02 1.77 16 32 H 0.03 1.29 3.67 -2.39 -0.01 1.29 16 33 H 0.40 8.02 9.10 -74.05 -0.67 7.34 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 35 H 0.06 2.08 7.55 -2.39 -0.02 2.06 16 36 H 0.41 10.12 8.23 -92.71 -0.76 9.35 16 37 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 41 H 0.07 0.53 8.11 -2.39 -0.02 0.52 16 42 H 0.06 0.58 8.11 -2.39 -0.02 0.56 16 43 H 0.09 0.40 8.14 -2.38 -0.02 0.39 16 44 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 46 H 0.02 0.68 7.91 -2.39 -0.02 0.66 16 47 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -79.34 375.96 -0.62 -79.97 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -0.54 Total: 21.72 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 4.71 Total: 0.77 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -4.54 Total: -115.50 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.93 Total: -42.18 kcal Atomic # 14 Polarization: 53.54 SS G_CDS: 1.69 Total: 55.23 kcal Total: -79.34 -0.62 -79.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958134255.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.746 kcal (2) G-P(sol) polarization free energy of solvation -79.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds