Wall clock time and date at job start Tue Mar 31 2020 20:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99746 * 2 1 4 4 H 1.48502 * 109.46845 * 269.99815 * 3 2 1 5 5 H 1.48504 * 109.47195 * 29.99572 * 3 2 1 6 6 H 1.48495 * 109.47366 * 149.99787 * 3 2 1 7 7 C 1.38810 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99684 * 0.02562 * 7 2 1 10 10 C 1.47025 * 125.65238 * 359.95602 * 9 7 2 11 11 C 1.54317 * 107.27201 * 181.09459 * 10 9 7 12 12 H 1.08998 * 110.72561 * 263.83052 * 11 10 9 13 13 O 1.42905 * 110.71893 * 140.55410 * 11 10 9 14 14 C 1.55158 * 102.94371 * 22.19618 * 11 10 9 15 15 H 1.09001 * 111.03566 * 82.58299 * 14 11 10 16 16 C 1.52997 * 111.00287 * 206.42253 * 14 11 10 17 17 N 1.46507 * 109.47085 * 178.64946 * 16 14 11 18 18 C 1.34772 * 119.99976 * 179.97438 * 17 16 14 19 19 O 1.21701 * 120.00284 * 0.02562 * 18 17 16 20 20 C 1.46662 * 120.00017 * 179.97438 * 18 17 16 21 21 O 1.35284 * 126.09799 * 0.11619 * 20 18 17 22 22 C 1.34293 * 109.45645 * 180.25343 * 21 20 18 23 23 C 1.34220 * 108.57387 * 359.72498 * 22 21 20 24 24 C 1.35553 * 126.09998 * 180.02562 * 20 18 17 25 25 C 1.50656 * 129.37706 * 0.08638 * 24 20 18 26 26 C 1.53442 * 108.11855 * 163.14123 * 25 24 20 27 27 C 1.53014 * 109.80914 * 50.46325 * 26 25 24 28 28 C 1.50728 * 129.23626 * 180.20734 * 23 22 21 29 29 C 1.47433 * 125.64669 * 179.97438 * 9 7 2 30 30 H 0.96995 * 120.00332 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.88025 * 300.51470 * 10 9 7 32 32 H 1.09000 * 109.88038 * 61.52035 * 10 9 7 33 33 H 0.96709 * 113.99235 * 66.47820 * 13 11 10 34 34 H 1.08997 * 109.47666 * 58.64644 * 16 14 11 35 35 H 1.09005 * 109.47204 * 298.64678 * 16 14 11 36 36 H 0.96992 * 119.99588 * 0.02562 * 17 16 14 37 37 H 1.07997 * 125.70881 * 179.68479 * 22 21 20 38 38 H 1.09003 * 109.73019 * 282.79785 * 25 24 20 39 39 H 1.08998 * 109.72895 * 43.48436 * 25 24 20 40 40 H 1.09002 * 109.41689 * 170.56645 * 26 25 24 41 41 H 1.09006 * 109.41908 * 290.36019 * 26 25 24 42 42 H 1.09001 * 109.40898 * 48.44055 * 27 26 25 43 43 H 1.09001 * 109.41113 * 168.29146 * 27 26 25 44 44 H 1.09007 * 109.73173 * 43.58453 * 28 23 22 45 45 H 1.08997 * 109.77329 * 282.92210 * 28 23 22 46 46 H 1.08998 * 110.36552 * 36.99929 * 29 9 7 47 47 H 1.08997 * 110.45852 * 274.71761 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0009 11 6 -0.4482 -4.0441 0.0289 12 1 -0.6315 -4.4189 -0.9780 13 8 -1.5624 -4.3154 0.8816 14 6 0.8523 -4.6556 0.6139 15 1 0.8579 -4.5954 1.7022 16 6 1.0374 -6.1006 0.1465 17 7 2.2887 -6.6336 0.6910 18 6 2.6613 -7.8980 0.4104 19 8 1.9585 -8.5970 -0.2958 20 6 3.9143 -8.4313 0.9550 21 8 4.7844 -7.7672 1.7500 22 6 5.8198 -8.5689 2.0477 23 6 5.6251 -9.7568 1.4541 24 6 4.4062 -9.6782 0.7530 25 6 3.8308 -10.8138 -0.0527 26 6 4.9490 -11.8335 -0.3063 27 6 5.6440 -12.1795 1.0122 28 6 6.4913 -10.9901 1.4824 29 6 1.9337 -3.7311 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5573 -2.0515 0.8842 32 1 -0.5547 -2.0828 -0.8999 33 1 -2.4002 -3.9544 0.5608 34 1 1.0740 -6.1285 -0.9425 35 1 0.2015 -6.7059 0.4975 36 1 2.8486 -6.0766 1.2541 37 1 6.6675 -8.3021 2.6614 38 1 3.0210 -11.2862 0.5034 39 1 3.4541 -10.4366 -1.0034 40 1 4.5228 -12.7384 -0.7395 41 1 5.6761 -11.4092 -0.9987 42 1 4.8931 -12.4101 1.7679 43 1 6.2883 -13.0464 0.8655 44 1 6.8451 -11.1681 2.4980 45 1 7.3423 -10.8584 0.8142 46 1 2.8336 -3.7401 0.6155 47 1 2.1673 -4.0435 -1.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958622190.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:03 Heat of formation + Delta-G solvation = -59.490143 kcal Electronic energy + Delta-G solvation = -28688.775918 eV Core-core repulsion = 24645.168409 eV Total energy + Delta-G solvation = -4043.607509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.97216 -39.53677 -38.19233 -37.58305 -35.20161 -34.67415 -32.33305 -32.04731 -31.94311 -30.01044 -28.57623 -27.50455 -25.63872 -24.68466 -23.88812 -22.42032 -22.30380 -20.56693 -20.17273 -19.63541 -19.32171 -17.91356 -16.96508 -16.72933 -16.59516 -16.15030 -15.78554 -15.20285 -15.02203 -14.77431 -14.65429 -14.26553 -14.13979 -14.00451 -13.68788 -13.18390 -13.08320 -13.02345 -12.66519 -12.54828 -12.45082 -12.23139 -12.03272 -11.49256 -11.24743 -11.15505 -11.10392 -10.99830 -10.90547 -10.82941 -10.61350 -10.25845 -10.05942 -9.83672 -9.82344 -9.56868 -9.24127 -9.11765 -8.68601 -8.67107 -6.91934 -5.77287 -3.11805 0.95771 2.11166 2.57226 3.13220 3.21657 3.37017 3.41933 3.43963 4.20562 4.41828 4.48258 4.49406 4.60860 4.72039 4.89498 4.97037 4.99462 5.09157 5.16808 5.20093 5.28452 5.36588 5.41961 5.48033 5.58148 5.64712 5.65392 5.71205 5.78611 5.83716 5.85434 5.97450 6.00941 6.02138 6.05168 6.19018 6.22446 6.32046 6.38720 6.51529 6.70702 6.80450 7.37563 7.47477 7.48382 7.73169 8.07371 8.17256 8.18563 9.14289 9.74774 10.38965 11.34362 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.002401 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.286574 B =11657.383498 C =12780.010236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.151 3.849 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.566 6.566 14 C -0.108 4.108 15 H 0.090 0.910 16 C 0.133 3.867 17 N -0.712 5.712 18 C 0.600 3.400 19 O -0.523 6.523 20 C -0.071 4.071 21 O -0.166 6.166 22 C -0.002 4.002 23 C -0.194 4.194 24 C -0.086 4.086 25 C -0.055 4.055 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.049 4.049 29 C 0.141 3.859 30 H 0.253 0.747 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.376 0.624 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.407 0.593 37 H 0.208 0.792 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.622 -22.409 2.833 24.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.026 3.974 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.371 6.371 14 C -0.128 4.128 15 H 0.109 0.891 16 C 0.010 3.990 17 N -0.362 5.362 18 C 0.386 3.614 19 O -0.402 6.402 20 C -0.123 4.123 21 O -0.062 6.062 22 C -0.071 4.071 23 C -0.195 4.195 24 C -0.089 4.089 25 C -0.092 4.092 26 C -0.157 4.157 27 C -0.156 4.156 28 C -0.086 4.086 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.223 0.777 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.242 0.758 37 H 0.225 0.775 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.441 -22.644 2.764 24.689 hybrid contribution 0.436 1.540 0.007 1.601 sum 9.878 -21.104 2.771 23.465 Atomic orbital electron populations 1.69936 1.04932 1.25175 1.56956 1.24821 0.95767 0.97792 1.02053 0.86086 0.78577 0.83300 0.77590 1.21548 1.21626 1.20642 1.19068 0.90470 0.82228 1.44045 0.90252 1.44308 1.01333 0.99934 1.87363 1.21831 0.85185 0.88503 1.01860 1.23115 0.85051 0.97909 0.91595 0.92469 1.86427 1.18874 1.80139 1.51678 1.22618 0.96249 0.92184 1.01761 0.89146 1.21450 0.84945 0.93834 0.98776 1.45955 1.24947 1.13159 1.52148 1.16521 0.82449 0.81992 0.80393 1.90856 1.52418 1.58725 1.38157 1.21580 0.94807 0.93105 1.02809 1.84267 1.27829 1.40476 1.53607 1.23793 0.91810 0.89392 1.02107 1.20311 0.98268 0.97331 1.03599 1.20373 0.94920 0.94394 0.99166 1.20224 0.97185 0.92125 0.99622 1.21619 0.97782 0.98851 0.97421 1.21576 0.99159 0.97199 0.97695 1.20082 0.96335 0.90461 1.01700 1.21614 0.94083 0.85783 0.97063 0.93664 0.92402 0.93577 0.77694 0.91034 0.90828 0.75783 0.77545 0.90117 0.89371 0.91310 0.91725 0.91668 0.91469 0.90723 0.90667 0.93914 0.95861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.31 55.49 0.57 -26.20 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 8 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.60 -15.14 3.39 -170.06 -0.58 -15.71 16 10 C 0.15 3.60 5.15 -3.07 -0.02 3.58 16 11 C 0.08 1.55 3.80 -24.90 -0.09 1.45 16 12 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 13 O -0.57 -9.81 13.39 -35.23 -0.47 -10.28 16 14 C -0.11 -1.89 2.83 -88.46 -0.25 -2.14 16 15 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 16 C 0.13 2.02 5.12 -4.04 -0.02 2.00 16 17 N -0.71 -10.08 5.40 -61.62 -0.33 -10.42 16 18 C 0.60 8.98 7.79 -12.86 -0.10 8.88 16 19 O -0.52 -8.93 15.44 5.19 0.08 -8.85 16 20 C -0.07 -0.95 7.12 -37.14 -0.26 -1.22 16 21 O -0.17 -1.98 10.43 2.95 0.03 -1.95 16 22 C 0.00 -0.02 12.05 29.32 0.35 0.34 16 23 C -0.19 -1.88 5.92 -105.04 -0.62 -2.50 16 24 C -0.09 -1.02 5.94 -104.62 -0.62 -1.65 16 25 C -0.05 -0.58 5.41 -27.68 -0.15 -0.73 16 26 C -0.12 -0.94 5.86 -26.50 -0.16 -1.10 16 27 C -0.12 -0.81 5.86 -26.51 -0.16 -0.96 16 28 C -0.05 -0.34 6.30 -27.65 -0.17 -0.51 16 29 C 0.14 2.82 6.41 -2.51 -0.02 2.80 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.06 1.55 7.30 -51.93 -0.38 1.17 16 32 H 0.05 1.20 7.50 -51.93 -0.39 0.81 16 33 H 0.38 5.04 9.12 45.56 0.42 5.45 16 34 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.41 5.31 8.10 -40.82 -0.33 4.98 16 37 H 0.21 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.09 1.05 7.47 -51.93 -0.39 0.66 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.02 0.47 8.00 -51.93 -0.42 0.05 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -33.19 379.73 -9.05 -42.24 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.52 Total: 7.11 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -2.54 Total: 1.44 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.34 Total: -52.33 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.36 Total: -21.08 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.19 -9.05 -42.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958622190.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.250 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds