Wall clock time and date at job start Tue Mar 31 2020 20:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99746 * 2 1 4 4 H 1.48502 * 109.46845 * 269.99815 * 3 2 1 5 5 H 1.48504 * 109.47195 * 29.99572 * 3 2 1 6 6 H 1.48495 * 109.47366 * 149.99787 * 3 2 1 7 7 C 1.38810 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99684 * 0.02562 * 7 2 1 10 10 C 1.47025 * 125.65238 * 359.95602 * 9 7 2 11 11 C 1.54317 * 107.27201 * 181.09459 * 10 9 7 12 12 H 1.08998 * 110.72561 * 263.83052 * 11 10 9 13 13 O 1.42905 * 110.71893 * 140.55410 * 11 10 9 14 14 C 1.55158 * 102.94371 * 22.19618 * 11 10 9 15 15 H 1.09001 * 111.03566 * 82.58299 * 14 11 10 16 16 C 1.52997 * 111.00287 * 206.42253 * 14 11 10 17 17 N 1.46507 * 109.47085 * 178.64946 * 16 14 11 18 18 C 1.34772 * 119.99976 * 179.97438 * 17 16 14 19 19 O 1.21701 * 120.00284 * 0.02562 * 18 17 16 20 20 C 1.46662 * 120.00017 * 179.97438 * 18 17 16 21 21 O 1.35284 * 126.09799 * 0.11619 * 20 18 17 22 22 C 1.34293 * 109.45645 * 180.25343 * 21 20 18 23 23 C 1.34220 * 108.57387 * 359.72498 * 22 21 20 24 24 C 1.35553 * 126.09998 * 180.02562 * 20 18 17 25 25 C 1.50656 * 129.37706 * 0.08638 * 24 20 18 26 26 C 1.53442 * 108.11855 * 163.14123 * 25 24 20 27 27 C 1.53014 * 109.80914 * 50.46325 * 26 25 24 28 28 C 1.50728 * 129.23626 * 180.20734 * 23 22 21 29 29 C 1.47433 * 125.64669 * 179.97438 * 9 7 2 30 30 H 0.96995 * 120.00332 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.88025 * 300.51470 * 10 9 7 32 32 H 1.09000 * 109.88038 * 61.52035 * 10 9 7 33 33 H 0.96709 * 113.99235 * 66.47820 * 13 11 10 34 34 H 1.08997 * 109.47666 * 58.64644 * 16 14 11 35 35 H 1.09005 * 109.47204 * 298.64678 * 16 14 11 36 36 H 0.96992 * 119.99588 * 0.02562 * 17 16 14 37 37 H 1.07997 * 125.70881 * 179.68479 * 22 21 20 38 38 H 1.09003 * 109.73019 * 282.79785 * 25 24 20 39 39 H 1.08998 * 109.72895 * 43.48436 * 25 24 20 40 40 H 1.09002 * 109.41689 * 170.56645 * 26 25 24 41 41 H 1.09006 * 109.41908 * 290.36019 * 26 25 24 42 42 H 1.09001 * 109.40898 * 48.44055 * 27 26 25 43 43 H 1.09001 * 109.41113 * 168.29146 * 27 26 25 44 44 H 1.09007 * 109.73173 * 43.58453 * 28 23 22 45 45 H 1.08997 * 109.77329 * 282.92210 * 28 23 22 46 46 H 1.08998 * 110.36552 * 36.99929 * 29 9 7 47 47 H 1.08997 * 110.45852 * 274.71761 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0009 11 6 -0.4482 -4.0441 0.0289 12 1 -0.6315 -4.4189 -0.9780 13 8 -1.5624 -4.3154 0.8816 14 6 0.8523 -4.6556 0.6139 15 1 0.8579 -4.5954 1.7022 16 6 1.0374 -6.1006 0.1465 17 7 2.2887 -6.6336 0.6910 18 6 2.6613 -7.8980 0.4104 19 8 1.9585 -8.5970 -0.2958 20 6 3.9143 -8.4313 0.9550 21 8 4.7844 -7.7672 1.7500 22 6 5.8198 -8.5689 2.0477 23 6 5.6251 -9.7568 1.4541 24 6 4.4062 -9.6782 0.7530 25 6 3.8308 -10.8138 -0.0527 26 6 4.9490 -11.8335 -0.3063 27 6 5.6440 -12.1795 1.0122 28 6 6.4913 -10.9901 1.4824 29 6 1.9337 -3.7311 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5573 -2.0515 0.8842 32 1 -0.5547 -2.0828 -0.8999 33 1 -2.4002 -3.9544 0.5608 34 1 1.0740 -6.1285 -0.9425 35 1 0.2015 -6.7059 0.4975 36 1 2.8486 -6.0766 1.2541 37 1 6.6675 -8.3021 2.6614 38 1 3.0210 -11.2862 0.5034 39 1 3.4541 -10.4366 -1.0034 40 1 4.5228 -12.7384 -0.7395 41 1 5.6761 -11.4092 -0.9987 42 1 4.8931 -12.4101 1.7679 43 1 6.2883 -13.0464 0.8655 44 1 6.8451 -11.1681 2.4980 45 1 7.3423 -10.8584 0.8142 46 1 2.8336 -3.7401 0.6155 47 1 2.1673 -4.0435 -1.0172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958622190.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:02 Heat of formation + Delta-G solvation = -83.341249 kcal Electronic energy + Delta-G solvation = -28689.810180 eV Core-core repulsion = 24645.168409 eV Total energy + Delta-G solvation = -4044.641771 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.52 seconds Orbital eigenvalues (eV) -43.79561 -40.77632 -39.72263 -38.27160 -36.67111 -36.17041 -34.06604 -32.87480 -32.69228 -31.59447 -29.73091 -29.03753 -27.27444 -25.62121 -25.18314 -23.57626 -23.00054 -22.22052 -21.60461 -20.85583 -20.04734 -19.07491 -18.70355 -18.19314 -17.50610 -17.16732 -17.09934 -16.67310 -16.28638 -15.81205 -15.71361 -15.54048 -15.30310 -14.98137 -14.80609 -14.61913 -14.43040 -14.06262 -13.84963 -13.73387 -13.67857 -13.24138 -13.19859 -13.12283 -12.95796 -12.73088 -12.49311 -12.31800 -11.96272 -11.84660 -11.81119 -11.72930 -11.56771 -11.47551 -11.18004 -10.83874 -10.74826 -10.42094 -10.22966 -9.54030 -8.95856 -7.88037 -5.24791 0.02680 1.35016 1.45446 1.47231 1.55857 1.66828 2.05797 2.17574 2.46684 3.21281 3.32335 3.49202 3.53303 3.60959 3.76194 3.84115 3.86164 4.02232 4.11414 4.18167 4.29568 4.37731 4.38901 4.43792 4.53457 4.57714 4.63843 4.69203 4.73591 4.83413 4.91749 4.95341 5.01991 5.04998 5.14917 5.16958 5.24606 5.29013 5.32187 5.39995 5.45112 5.46844 5.52129 5.69368 5.86441 6.14670 6.38677 6.87901 6.95028 7.05395 7.71753 8.35177 9.22102 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018498 B = 0.002401 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.286574 B =11657.383498 C =12780.010236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.086 0.914 9 N -0.625 5.625 10 C 0.161 3.839 11 C 0.098 3.902 12 H 0.078 0.922 13 O -0.569 6.569 14 C -0.090 4.090 15 H 0.085 0.915 16 C 0.147 3.853 17 N -0.708 5.708 18 C 0.600 3.400 19 O -0.553 6.553 20 C -0.107 4.107 21 O -0.177 6.177 22 C 0.011 3.989 23 C -0.205 4.205 24 C -0.089 4.089 25 C -0.058 4.058 26 C -0.115 4.115 27 C -0.118 4.118 28 C -0.047 4.047 29 C 0.140 3.860 30 H 0.247 0.753 31 H 0.020 0.980 32 H 0.015 0.985 33 H 0.394 0.606 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.413 0.587 37 H 0.250 0.750 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.053 0.947 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.069 -24.132 3.573 27.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.372 4.372 8 H 0.104 0.896 9 N -0.352 5.352 10 C 0.035 3.965 11 C 0.038 3.962 12 H 0.096 0.904 13 O -0.376 6.376 14 C -0.110 4.110 15 H 0.103 0.897 16 C 0.023 3.977 17 N -0.358 5.358 18 C 0.388 3.612 19 O -0.434 6.434 20 C -0.158 4.158 21 O -0.074 6.074 22 C -0.058 4.058 23 C -0.206 4.206 24 C -0.092 4.092 25 C -0.095 4.095 26 C -0.153 4.153 27 C -0.156 4.156 28 C -0.084 4.084 29 C 0.014 3.986 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.033 0.967 33 H 0.243 0.757 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.249 0.751 37 H 0.266 0.734 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.071 0.929 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.903 -24.389 3.510 27.365 hybrid contribution -0.282 2.024 -0.199 2.053 sum 11.622 -22.366 3.311 25.421 Atomic orbital electron populations 1.70157 1.06314 1.25379 1.58178 1.25686 0.96682 1.01157 1.02479 0.85052 0.77688 0.78946 0.77482 1.21257 1.22150 1.19206 1.19481 0.91115 0.83474 1.43138 0.89611 1.44614 1.02145 1.01221 1.87227 1.21606 0.84600 0.91782 0.98528 1.22876 0.86092 0.94189 0.93064 0.90411 1.86396 1.19504 1.79940 1.51789 1.22412 0.94556 0.92909 1.01140 0.89670 1.21210 0.85629 0.92101 0.98714 1.45856 1.24622 1.13202 1.52162 1.16721 0.82874 0.81718 0.79901 1.90828 1.53601 1.59381 1.39554 1.21306 0.95288 0.94015 1.05183 1.84249 1.28410 1.41112 1.53581 1.24711 0.91423 0.88747 1.00889 1.20703 0.97794 0.98807 1.03276 1.20753 0.95728 0.94041 0.98702 1.20252 0.98158 0.92646 0.98398 1.21616 0.96885 0.98386 0.98407 1.21596 0.99305 0.98083 0.96580 1.20203 0.96020 0.88891 1.03262 1.21761 0.95058 0.83979 0.97755 0.94338 0.96211 0.96711 0.75668 0.90975 0.90629 0.75105 0.73397 0.90621 0.91355 0.90124 0.91772 0.92255 0.89283 0.88675 0.89501 0.92873 0.95170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.97 10.31 21.65 0.22 -56.75 16 2 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 3 Si 0.98 45.53 29.55 68.60 2.03 47.55 16 4 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.24 -13.53 10.28 84.03 0.86 -12.67 16 8 H 0.09 4.52 7.83 -2.91 -0.02 4.50 16 9 N -0.62 -31.82 3.39 -691.95 -2.35 -34.17 16 10 C 0.16 7.85 5.15 86.73 0.45 8.29 16 11 C 0.10 3.61 3.80 31.78 0.12 3.73 16 12 H 0.08 2.59 8.04 -2.39 -0.02 2.57 16 13 O -0.57 -19.26 13.39 -148.98 -1.99 -21.25 16 14 C -0.09 -3.08 2.83 -9.40 -0.03 -3.11 16 15 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 16 C 0.15 4.33 5.12 86.38 0.44 4.78 16 17 N -0.71 -19.69 5.40 -467.08 -2.52 -22.21 16 18 C 0.60 18.01 7.79 86.44 0.67 18.68 16 19 O -0.55 -19.21 15.44 -4.35 -0.07 -19.28 16 20 C -0.11 -2.82 7.12 23.85 0.17 -2.65 16 21 O -0.18 -3.98 10.43 -12.35 -0.13 -4.11 16 22 C 0.01 0.17 12.05 66.90 0.81 0.97 16 23 C -0.20 -3.49 5.92 -20.14 -0.12 -3.60 16 24 C -0.09 -2.07 5.94 -19.86 -0.12 -2.19 16 25 C -0.06 -1.22 5.41 29.98 0.16 -1.06 16 26 C -0.12 -1.65 5.86 30.75 0.18 -1.47 16 27 C -0.12 -1.29 5.86 30.74 0.18 -1.11 16 28 C -0.05 -0.49 6.30 30.00 0.19 -0.30 16 29 C 0.14 5.50 6.41 86.86 0.56 6.06 16 30 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.02 1.10 7.30 -2.39 -0.02 1.08 16 32 H 0.01 0.80 7.50 -2.39 -0.02 0.78 16 33 H 0.39 10.25 9.12 -74.05 -0.68 9.58 16 34 H 0.07 2.15 8.10 -2.39 -0.02 2.13 16 35 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.41 10.47 8.10 -92.71 -0.75 9.72 16 37 H 0.25 1.39 8.06 -2.91 -0.02 1.37 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.70 7.47 -2.39 -0.02 1.68 16 40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.06 0.92 8.10 -2.38 -0.02 0.90 16 42 H 0.06 0.73 8.10 -2.39 -0.02 0.71 16 43 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 45 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.03 1.18 8.00 -2.39 -0.02 1.16 16 Total: -1.00 -73.88 379.73 -0.25 -74.13 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.43 Total: 25.06 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 4.99 Total: 11.02 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -4.65 Total: -113.13 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -2.19 Total: -44.64 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -73.88 -0.25 -74.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958622190.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.210 kcal (2) G-P(sol) polarization free energy of solvation -73.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds