Wall clock time and date at job start Tue Mar 31 2020 20:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48496 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46786 * 300.00156 * 3 2 1 6 6 H 1.48501 * 109.47113 * 59.99981 * 3 2 1 7 7 C 1.38807 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64998 * 359.95821 * 9 7 2 11 11 C 1.54915 * 104.83334 * 204.16451 * 10 9 7 12 12 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 13 13 O 1.42901 * 111.00253 * 81.06291 * 11 10 9 14 14 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 15 15 H 1.08993 * 110.71917 * 277.13865 * 14 11 10 16 16 C 1.52997 * 110.71789 * 153.86302 * 14 11 10 17 17 N 1.46505 * 109.47120 * 180.02562 * 16 14 11 18 18 C 1.34779 * 120.00047 * 180.02562 * 17 16 14 19 19 O 1.21696 * 119.99670 * 359.97438 * 18 17 16 20 20 C 1.46650 * 119.99682 * 179.97438 * 18 17 16 21 21 O 1.35284 * 126.10084 * 0.02562 * 20 18 17 22 22 C 1.34299 * 109.45875 * 179.97438 * 21 20 18 23 23 C 1.34226 * 108.57226 * 359.97438 * 22 21 20 24 24 C 1.35566 * 126.09834 * 179.71131 * 20 18 17 25 25 C 1.50652 * 129.36719 * 0.99854 * 24 20 18 26 26 C 1.53450 * 108.18013 * 162.89647 * 25 24 20 27 27 C 1.53018 * 109.79666 * 50.22063 * 26 25 24 28 28 C 1.50728 * 129.23265 * 180.20122 * 23 22 21 29 29 C 1.47022 * 125.64666 * 180.02562 * 9 7 2 30 30 H 0.96996 * 120.00418 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.36855 * 323.00192 * 10 9 7 32 32 H 1.08999 * 110.36490 * 85.21507 * 10 9 7 33 33 H 0.96700 * 113.99672 * 67.80895 * 13 11 10 34 34 H 1.08993 * 109.47505 * 300.02434 * 16 14 11 35 35 H 1.09004 * 109.46953 * 60.02320 * 16 14 11 36 36 H 0.97001 * 119.99639 * 359.97438 * 17 16 14 37 37 H 1.07997 * 125.71653 * 179.97438 * 22 21 20 38 38 H 1.09009 * 109.88988 * 43.11504 * 25 24 20 39 39 H 1.09001 * 109.55317 * 282.49064 * 25 24 20 40 40 H 1.08995 * 109.41969 * 290.12193 * 26 25 24 41 41 H 1.09000 * 109.41637 * 170.32045 * 26 25 24 42 42 H 1.08997 * 109.41183 * 168.18524 * 27 26 25 43 43 H 1.08999 * 109.40731 * 48.40989 * 27 26 25 44 44 H 1.08994 * 109.73162 * 283.00406 * 28 23 22 45 45 H 1.08997 * 109.73567 * 43.64831 * 28 23 22 46 46 H 1.08997 * 109.88723 * 59.48965 * 29 9 7 47 47 H 1.08998 * 109.88661 * 298.31946 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0009 11 6 -0.4009 -3.9323 0.6133 12 1 -1.3585 -4.3328 0.2808 13 8 -0.3344 -3.8871 2.0401 14 6 0.7787 -4.7525 0.0273 15 1 0.5453 -5.0982 -0.9796 16 6 1.1244 -5.9311 0.9396 17 7 2.2398 -6.6851 0.3618 18 6 2.7180 -7.7735 0.9967 19 8 2.2236 -8.1297 2.0501 20 6 3.8342 -8.5285 0.4180 21 8 4.4735 -8.2442 -0.7398 22 6 5.4417 -9.1508 -0.9506 23 6 5.4365 -10.0261 0.0670 24 6 4.4132 -9.6324 0.9509 25 6 4.0739 -10.3717 2.2189 26 6 4.7202 -11.7618 2.1502 27 6 6.1978 -11.6284 1.7756 28 6 6.3250 -11.2210 0.3011 29 6 1.9320 -3.7274 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.5987 -1.7588 0.6167 32 1 -0.5283 -2.4851 -1.0170 33 1 -1.0513 -3.3852 2.4515 34 1 1.4091 -5.5579 1.9232 35 1 0.2561 -6.5830 1.0356 36 1 2.6335 -6.4013 -0.4781 37 1 6.1121 -9.1720 -1.7970 38 1 2.9925 -10.4728 2.3113 39 1 4.4669 -9.8250 3.0762 40 1 4.2086 -12.3625 1.3983 41 1 4.6352 -12.2493 3.1214 42 1 6.6988 -12.5837 1.9315 43 1 6.6637 -10.8694 2.4041 44 1 6.0092 -12.0452 -0.3384 45 1 7.3597 -10.9593 0.0800 46 1 2.5590 -3.8505 0.8825 47 1 2.5279 -3.8646 -0.9028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958622192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:27 Heat of formation + Delta-G solvation = -55.771521 kcal Electronic energy + Delta-G solvation = -28845.769493 eV Core-core repulsion = 24802.323235 eV Total energy + Delta-G solvation = -4043.446258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 23.95 seconds Orbital eigenvalues (eV) -42.95273 -39.49482 -38.19470 -37.56410 -34.92212 -34.52411 -32.28016 -32.01550 -31.92300 -29.95717 -28.59057 -27.60620 -25.58122 -24.67086 -23.90177 -22.40103 -22.28827 -20.57348 -19.97386 -19.47514 -19.30315 -17.84965 -17.30636 -16.61297 -16.39939 -16.10781 -15.64038 -15.01232 -14.90808 -14.79108 -14.63450 -14.21228 -14.07003 -14.02889 -13.77853 -13.28617 -13.02539 -12.99121 -12.68997 -12.53307 -12.33569 -12.22677 -11.93371 -11.38479 -11.25415 -11.14126 -11.08311 -10.89239 -10.82086 -10.65247 -10.37308 -10.31862 -10.04114 -9.86816 -9.82404 -9.55057 -9.11232 -9.04949 -8.68911 -8.64713 -6.84318 -5.69223 -3.09060 0.98339 2.12863 2.59593 3.17491 3.27725 3.38500 3.44276 3.46594 4.22126 4.45792 4.49670 4.51986 4.62691 4.74251 4.92452 4.99285 5.07352 5.15684 5.18357 5.29725 5.31349 5.37745 5.40683 5.51248 5.59541 5.61440 5.66468 5.73356 5.80322 5.86793 5.90197 6.01244 6.04787 6.07077 6.11712 6.24544 6.33294 6.42020 6.46371 6.62654 6.73826 6.86068 7.28309 7.53028 7.58093 7.75328 8.13016 8.23623 8.37321 9.18670 9.79964 10.43901 11.35849 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.002392 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.336947 B =11702.468506 C =12499.578244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.013 4.013 3 Si 0.915 3.085 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.126 3.874 11 C 0.083 3.917 12 H 0.055 0.945 13 O -0.557 6.557 14 C -0.107 4.107 15 H 0.086 0.914 16 C 0.140 3.860 17 N -0.715 5.715 18 C 0.599 3.401 19 O -0.521 6.521 20 C -0.071 4.071 21 O -0.166 6.166 22 C -0.004 4.004 23 C -0.193 4.193 24 C -0.086 4.086 25 C -0.055 4.055 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.048 4.048 29 C 0.144 3.856 30 H 0.251 0.749 31 H 0.112 0.888 32 H 0.019 0.981 33 H 0.375 0.625 34 H 0.084 0.916 35 H 0.067 0.933 36 H 0.405 0.595 37 H 0.208 0.792 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.029 0.971 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 -23.170 -0.633 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.208 4.208 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.323 5.323 10 C 0.001 3.999 11 C 0.022 3.978 12 H 0.073 0.927 13 O -0.363 6.363 14 C -0.126 4.126 15 H 0.105 0.895 16 C 0.017 3.983 17 N -0.365 5.365 18 C 0.385 3.615 19 O -0.400 6.400 20 C -0.122 4.122 21 O -0.062 6.062 22 C -0.073 4.073 23 C -0.195 4.195 24 C -0.089 4.089 25 C -0.092 4.092 26 C -0.156 4.156 27 C -0.157 4.157 28 C -0.085 4.085 29 C 0.018 3.982 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.037 0.963 33 H 0.222 0.778 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.239 0.761 37 H 0.224 0.776 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.047 0.953 47 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.021 -23.276 -0.162 24.620 hybrid contribution 0.295 1.343 -0.614 1.506 sum 8.316 -21.933 -0.775 23.470 Atomic orbital electron populations 1.69752 1.04911 1.24658 1.58200 1.24763 0.95760 0.97727 1.02568 0.85977 0.78673 0.83516 0.77222 1.20535 1.21796 1.21723 1.19137 0.90561 0.82407 1.42401 0.90429 1.44353 1.01543 0.99766 1.86686 1.22591 0.85729 0.92971 0.98643 1.23197 0.95094 0.98106 0.81413 0.92714 1.86390 1.54352 1.76649 1.18886 1.22515 0.97490 0.94328 0.98281 0.89548 1.21318 0.87734 0.91408 0.97858 1.46042 1.36154 1.27868 1.26401 1.16521 0.80754 0.80219 0.84011 1.90862 1.58895 1.68535 1.21662 1.21631 1.00645 1.00928 0.89009 1.84262 1.39279 1.46637 1.36071 1.23781 0.92990 0.89597 1.00901 1.20313 1.01407 1.01225 0.96518 1.20375 0.95494 0.94818 0.98239 1.20225 1.01907 0.94056 0.92994 1.21616 0.95535 0.96677 1.01794 1.21592 0.96850 1.01524 0.95702 1.20091 0.97538 0.93734 0.97183 1.21314 0.93369 0.85631 0.97888 0.93802 0.87042 0.96276 0.77790 0.89753 0.91468 0.76053 0.77578 0.89397 0.90077 0.91789 0.91310 0.91481 0.91605 0.90700 0.90728 0.95344 0.96266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.64 10.09 55.49 0.56 -26.08 16 2 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 3 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -6.07 10.27 -15.06 -0.15 -6.23 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.27 3.39 -170.07 -0.58 -15.84 16 10 C 0.13 2.96 5.62 -2.53 -0.01 2.95 16 11 C 0.08 1.52 4.17 -24.57 -0.10 1.42 16 12 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 13 O -0.56 -10.31 12.22 -35.23 -0.43 -10.74 16 14 C -0.11 -1.84 2.95 -88.78 -0.26 -2.10 16 15 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.14 2.24 4.59 -4.04 -0.02 2.23 16 17 N -0.71 -10.45 5.40 -61.63 -0.33 -10.78 16 18 C 0.60 9.29 7.79 -12.86 -0.10 9.19 16 19 O -0.52 -9.31 15.45 5.19 0.08 -9.23 16 20 C -0.07 -0.96 7.12 -37.14 -0.26 -1.23 16 21 O -0.17 -2.01 10.43 2.94 0.03 -1.98 16 22 C 0.00 -0.03 12.05 29.32 0.35 0.32 16 23 C -0.19 -1.91 5.92 -105.04 -0.62 -2.53 16 24 C -0.09 -1.06 5.95 -104.62 -0.62 -1.68 16 25 C -0.05 -0.60 5.40 -27.67 -0.15 -0.75 16 26 C -0.12 -0.96 5.86 -26.49 -0.16 -1.12 16 27 C -0.12 -0.84 5.86 -26.46 -0.16 -1.00 16 28 C -0.05 -0.34 6.30 -27.61 -0.17 -0.51 16 29 C 0.14 3.02 6.52 -3.06 -0.02 3.00 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.11 2.93 5.87 -51.93 -0.31 2.62 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.38 5.66 9.12 45.56 0.42 6.07 16 34 H 0.08 1.57 7.44 -51.93 -0.39 1.19 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.40 5.32 8.09 -40.82 -0.33 4.99 16 37 H 0.21 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.09 1.07 7.49 -51.92 -0.39 0.68 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.03 0.63 7.76 -51.93 -0.40 0.23 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -33.41 377.30 -9.00 -42.41 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.44 Total: 7.95 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -2.56 Total: 1.48 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.35 Total: -52.71 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.32 Total: -21.95 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.41 -9.00 -42.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958622192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.363 kcal (2) G-P(sol) polarization free energy of solvation -33.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.95 seconds