Wall clock time and date at job start Tue Mar 31 2020 20:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48496 * 109.47389 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46786 * 300.00156 * 3 2 1 6 6 H 1.48501 * 109.47113 * 59.99981 * 3 2 1 7 7 C 1.38807 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00516 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99658 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64998 * 359.95821 * 9 7 2 11 11 C 1.54915 * 104.83334 * 204.16451 * 10 9 7 12 12 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 13 13 O 1.42901 * 111.00253 * 81.06291 * 11 10 9 14 14 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 15 15 H 1.08993 * 110.71917 * 277.13865 * 14 11 10 16 16 C 1.52997 * 110.71789 * 153.86302 * 14 11 10 17 17 N 1.46505 * 109.47120 * 180.02562 * 16 14 11 18 18 C 1.34779 * 120.00047 * 180.02562 * 17 16 14 19 19 O 1.21696 * 119.99670 * 359.97438 * 18 17 16 20 20 C 1.46650 * 119.99682 * 179.97438 * 18 17 16 21 21 O 1.35284 * 126.10084 * 0.02562 * 20 18 17 22 22 C 1.34299 * 109.45875 * 179.97438 * 21 20 18 23 23 C 1.34226 * 108.57226 * 359.97438 * 22 21 20 24 24 C 1.35566 * 126.09834 * 179.71131 * 20 18 17 25 25 C 1.50652 * 129.36719 * 0.99854 * 24 20 18 26 26 C 1.53450 * 108.18013 * 162.89647 * 25 24 20 27 27 C 1.53018 * 109.79666 * 50.22063 * 26 25 24 28 28 C 1.50728 * 129.23265 * 180.20122 * 23 22 21 29 29 C 1.47022 * 125.64666 * 180.02562 * 9 7 2 30 30 H 0.96996 * 120.00418 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.36855 * 323.00192 * 10 9 7 32 32 H 1.08999 * 110.36490 * 85.21507 * 10 9 7 33 33 H 0.96700 * 113.99672 * 67.80895 * 13 11 10 34 34 H 1.08993 * 109.47505 * 300.02434 * 16 14 11 35 35 H 1.09004 * 109.46953 * 60.02320 * 16 14 11 36 36 H 0.97001 * 119.99639 * 359.97438 * 17 16 14 37 37 H 1.07997 * 125.71653 * 179.97438 * 22 21 20 38 38 H 1.09009 * 109.88988 * 43.11504 * 25 24 20 39 39 H 1.09001 * 109.55317 * 282.49064 * 25 24 20 40 40 H 1.08995 * 109.41969 * 290.12193 * 26 25 24 41 41 H 1.09000 * 109.41637 * 170.32045 * 26 25 24 42 42 H 1.08997 * 109.41183 * 168.18524 * 27 26 25 43 43 H 1.08999 * 109.40731 * 48.40989 * 27 26 25 44 44 H 1.08994 * 109.73162 * 283.00406 * 28 23 22 45 45 H 1.08997 * 109.73567 * 43.64831 * 28 23 22 46 46 H 1.08997 * 109.88723 * 59.48965 * 29 9 7 47 47 H 1.08998 * 109.88661 * 298.31946 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1414 -2.5332 0.0009 11 6 -0.4009 -3.9323 0.6133 12 1 -1.3585 -4.3328 0.2808 13 8 -0.3344 -3.8871 2.0401 14 6 0.7787 -4.7525 0.0273 15 1 0.5453 -5.0982 -0.9796 16 6 1.1244 -5.9311 0.9396 17 7 2.2398 -6.6851 0.3618 18 6 2.7180 -7.7735 0.9967 19 8 2.2236 -8.1297 2.0501 20 6 3.8342 -8.5285 0.4180 21 8 4.4735 -8.2442 -0.7398 22 6 5.4417 -9.1508 -0.9506 23 6 5.4365 -10.0261 0.0670 24 6 4.4132 -9.6324 0.9509 25 6 4.0739 -10.3717 2.2189 26 6 4.7202 -11.7618 2.1502 27 6 6.1978 -11.6284 1.7756 28 6 6.3250 -11.2210 0.3011 29 6 1.9320 -3.7274 -0.0005 30 1 -0.4850 0.8400 0.0004 31 1 -0.5987 -1.7588 0.6167 32 1 -0.5283 -2.4851 -1.0170 33 1 -1.0513 -3.3852 2.4515 34 1 1.4091 -5.5579 1.9232 35 1 0.2561 -6.5830 1.0356 36 1 2.6335 -6.4013 -0.4781 37 1 6.1121 -9.1720 -1.7970 38 1 2.9925 -10.4728 2.3113 39 1 4.4669 -9.8250 3.0762 40 1 4.2086 -12.3625 1.3983 41 1 4.6352 -12.2493 3.1214 42 1 6.6988 -12.5837 1.9315 43 1 6.6637 -10.8694 2.4041 44 1 6.0092 -12.0452 -0.3384 45 1 7.3597 -10.9593 0.0800 46 1 2.5590 -3.8505 0.8825 47 1 2.5279 -3.8646 -0.9028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958622192.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:25 Heat of formation + Delta-G solvation = -79.807626 kcal Electronic energy + Delta-G solvation = -28846.811777 eV Core-core repulsion = 24802.323235 eV Total energy + Delta-G solvation = -4044.488541 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 14.27 seconds Orbital eigenvalues (eV) -43.79968 -40.78055 -39.72790 -38.27536 -36.35111 -36.16182 -34.01171 -32.87564 -32.69754 -31.56306 -29.81596 -29.06529 -27.27323 -25.64260 -25.19903 -23.58747 -23.00760 -22.20868 -21.37650 -20.77339 -20.05340 -19.16044 -18.84908 -18.02195 -17.48604 -17.14203 -16.83673 -16.77183 -16.23781 -15.80070 -15.64065 -15.54815 -15.32818 -15.17361 -14.79787 -14.62830 -14.43501 -13.97271 -13.86256 -13.73877 -13.66935 -13.20884 -13.19603 -13.06196 -12.96272 -12.68020 -12.32683 -12.06836 -11.93216 -11.86658 -11.83622 -11.74327 -11.62073 -11.51431 -11.14904 -10.82698 -10.67644 -10.42053 -10.22156 -9.54269 -8.87479 -7.80347 -5.22750 0.02230 1.34563 1.45057 1.45928 1.56057 1.66829 2.05603 2.19831 2.47538 3.26437 3.34037 3.48729 3.57884 3.68273 3.83215 3.87349 3.93666 3.98331 4.01708 4.17316 4.29473 4.38912 4.41411 4.52670 4.57821 4.61499 4.63600 4.72402 4.79705 4.87118 4.94618 4.97913 5.01263 5.04804 5.15835 5.19619 5.24751 5.30521 5.32277 5.38722 5.44540 5.49518 5.51579 5.76092 5.86034 6.27633 6.40025 6.94568 6.98345 7.10029 7.76170 8.39011 9.22036 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019962 B = 0.002392 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.336947 B =11702.468506 C =12499.578244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.065 4.065 3 Si 0.979 3.021 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.075 0.925 9 N -0.621 5.621 10 C 0.126 3.874 11 C 0.094 3.906 12 H 0.092 0.908 13 O -0.569 6.569 14 C -0.092 4.092 15 H 0.114 0.886 16 C 0.155 3.845 17 N -0.709 5.709 18 C 0.598 3.402 19 O -0.555 6.555 20 C -0.107 4.107 21 O -0.176 6.176 22 C 0.011 3.989 23 C -0.204 4.204 24 C -0.090 4.090 25 C -0.058 4.058 26 C -0.114 4.114 27 C -0.119 4.119 28 C -0.046 4.046 29 C 0.142 3.858 30 H 0.248 0.752 31 H 0.081 0.919 32 H 0.003 0.997 33 H 0.389 0.611 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.413 0.587 37 H 0.252 0.748 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.012 0.988 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.617 -25.179 -1.828 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.346 5.346 10 C 0.001 3.999 11 C 0.034 3.966 12 H 0.110 0.890 13 O -0.377 6.377 14 C -0.111 4.111 15 H 0.132 0.868 16 C 0.032 3.968 17 N -0.359 5.359 18 C 0.385 3.615 19 O -0.436 6.436 20 C -0.158 4.158 21 O -0.073 6.073 22 C -0.057 4.057 23 C -0.206 4.206 24 C -0.093 4.093 25 C -0.095 4.095 26 C -0.152 4.152 27 C -0.157 4.157 28 C -0.083 4.083 29 C 0.017 3.983 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.021 0.979 33 H 0.238 0.762 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.249 0.751 37 H 0.268 0.732 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.030 0.970 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 9.674 -25.302 -1.366 27.123 hybrid contribution -0.152 1.932 -0.248 1.954 sum 9.522 -23.370 -1.614 25.287 Atomic orbital electron populations 1.69988 1.05987 1.24967 1.58789 1.25566 0.96723 1.00745 1.02752 0.85001 0.77984 0.79466 0.76821 1.19491 1.21654 1.21828 1.19442 0.90871 0.83906 1.42339 0.90686 1.44659 1.02670 1.00673 1.86639 1.22463 0.84626 0.95331 0.97463 1.23097 0.97218 0.95119 0.81183 0.89021 1.86378 1.55518 1.76816 1.18954 1.22458 0.95363 0.93406 0.99854 0.86826 1.21016 0.88484 0.91144 0.96201 1.45921 1.35840 1.27582 1.26590 1.16767 0.80982 0.80105 0.83606 1.90830 1.60200 1.69478 1.23075 1.21298 1.01731 1.02080 0.90659 1.84242 1.40007 1.47610 1.35422 1.24729 0.91658 0.87872 1.01449 1.20710 1.01298 1.02517 0.96051 1.20756 0.95705 0.94208 0.98635 1.20252 1.01023 0.95870 0.92392 1.21610 0.96279 0.94599 1.02670 1.21616 0.95828 1.02468 0.95752 1.20213 0.97973 0.92878 0.97231 1.21417 0.94621 0.84848 0.97407 0.94254 0.90149 0.97946 0.76216 0.92562 0.90427 0.75119 0.73246 0.91263 0.91085 0.91461 0.90200 0.89185 0.92539 0.89203 0.88765 0.96975 0.95258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.70 10.09 21.65 0.22 -55.48 16 2 C -0.07 -3.72 5.49 84.86 0.47 -3.26 16 3 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 6 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 7 C -0.24 -13.48 10.27 84.03 0.86 -12.62 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.62 -32.17 3.39 -691.99 -2.35 -34.52 16 10 C 0.13 6.02 5.62 86.86 0.49 6.51 16 11 C 0.09 3.39 4.17 31.99 0.13 3.52 16 12 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 13 O -0.57 -20.86 12.22 -148.98 -1.82 -22.68 16 14 C -0.09 -3.05 2.95 -9.60 -0.03 -3.08 16 15 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 16 C 0.15 4.91 4.59 86.38 0.40 5.31 16 17 N -0.71 -20.61 5.40 -467.10 -2.52 -23.13 16 18 C 0.60 18.90 7.79 86.44 0.67 19.57 16 19 O -0.55 -20.57 15.45 -4.34 -0.07 -20.64 16 20 C -0.11 -2.91 7.12 23.85 0.17 -2.74 16 21 O -0.18 -4.01 10.43 -12.41 -0.13 -4.14 16 22 C 0.01 0.18 12.05 66.90 0.81 0.98 16 23 C -0.20 -3.57 5.92 -20.14 -0.12 -3.68 16 24 C -0.09 -2.17 5.95 -19.86 -0.12 -2.28 16 25 C -0.06 -1.30 5.40 29.98 0.16 -1.14 16 26 C -0.11 -1.69 5.86 30.75 0.18 -1.51 16 27 C -0.12 -1.38 5.86 30.77 0.18 -1.20 16 28 C -0.05 -0.49 6.30 30.02 0.19 -0.30 16 29 C 0.14 5.97 6.52 86.73 0.57 6.53 16 30 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 31 H 0.08 4.35 5.87 -2.39 -0.01 4.34 16 32 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.39 11.62 9.12 -74.06 -0.68 10.94 16 34 H 0.06 2.13 7.44 -2.39 -0.02 2.11 16 35 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.41 10.58 8.09 -92.71 -0.75 9.83 16 37 H 0.25 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.07 1.78 7.49 -2.38 -0.02 1.76 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 43 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.01 0.55 7.76 -2.39 -0.02 0.53 16 47 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -74.94 377.30 -0.06 -75.00 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.42 Total: 26.91 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 5.01 Total: 10.61 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -4.65 Total: -113.14 kcal Atomic # 8 Polarization: -45.44 SS G_CDS: -2.02 Total: -47.46 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -74.94 -0.06 -75.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958622192.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.811 kcal (2) G-P(sol) polarization free energy of solvation -74.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.27 seconds