Wall clock time and date at job start Tue Mar 31 2020 21:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00014 * 2 1 4 4 H 1.48501 * 109.47442 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47322 * 299.99986 * 3 2 1 6 6 H 1.48500 * 109.47257 * 60.00001 * 3 2 1 7 7 C 1.38806 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99828 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00173 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.46955 * 34.99431 * 10 9 7 12 12 C 1.53002 * 109.46688 * 274.99450 * 10 9 7 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47127 * 60.00361 * 13 12 10 15 15 C 1.52999 * 109.46626 * 299.99539 * 14 13 12 16 16 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47704 * 300.00272 * 15 14 13 18 18 C 1.34778 * 119.99664 * 275.00456 * 17 15 14 19 19 O 1.21694 * 120.00417 * 359.97438 * 18 17 15 20 20 C 1.46660 * 120.00074 * 179.97438 * 18 17 15 21 21 O 1.35398 * 126.11554 * 0.02562 * 20 18 17 22 22 C 1.34395 * 109.47674 * 179.97438 * 21 20 18 23 23 C 1.33907 * 108.56081 * 359.97438 * 22 21 20 24 24 C 1.35181 * 126.12069 * 179.70916 * 20 18 17 25 25 C 1.50732 * 130.57437 * 1.00236 * 24 20 18 26 26 C 1.53680 * 107.50193 * 163.69809 * 25 24 20 27 27 O 1.42898 * 109.97285 * 48.01722 * 26 25 24 28 28 C 1.43517 * 114.76232 * 287.61145 * 27 26 25 29 29 C 1.52996 * 109.47258 * 154.99816 * 10 9 7 30 30 H 0.97001 * 120.00197 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99819 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47070 * 60.00104 * 12 10 9 33 33 H 1.08996 * 109.47407 * 299.99704 * 12 10 9 34 34 H 1.09001 * 109.47502 * 300.00518 * 13 12 10 35 35 H 1.09001 * 109.47289 * 180.02562 * 13 12 10 36 36 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 37 37 H 1.09000 * 109.47050 * 179.97438 * 14 13 12 38 38 H 0.96991 * 120.00469 * 95.00097 * 17 15 14 39 39 H 1.07997 * 125.72188 * 179.97438 * 22 21 20 40 40 H 1.09005 * 110.01922 * 44.08882 * 25 24 20 41 41 H 1.09004 * 109.70201 * 283.12930 * 25 24 20 42 42 H 1.08999 * 109.38844 * 287.86221 * 26 25 24 43 43 H 1.08998 * 109.38418 * 168.16908 * 26 25 24 44 44 H 1.08994 * 109.82681 * 291.96494 * 28 27 26 45 45 H 1.09006 * 109.82426 * 171.03478 * 28 27 26 46 46 H 1.09001 * 109.46993 * 300.00050 * 29 10 9 47 47 H 1.09000 * 109.47380 * 59.99156 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0901 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9683 -3.5502 0.5917 12 6 2.4229 -4.0362 -1.4350 13 6 3.1884 -5.3609 -1.4337 14 6 2.3112 -6.4563 -0.8240 15 6 1.9465 -6.0768 0.6125 16 1 1.3220 -6.8574 1.0471 17 7 3.1699 -5.9331 1.4054 18 6 3.7366 -7.0165 1.9725 19 8 3.2317 -8.1141 1.8264 20 6 4.9617 -6.8727 2.7659 21 8 5.6246 -5.7172 3.0081 22 6 6.7012 -5.9699 3.7717 23 6 6.7428 -7.2835 4.0286 24 6 5.6278 -7.8692 3.3910 25 6 5.3497 -9.3495 3.4477 26 6 6.6302 -10.0418 3.9405 27 8 7.1348 -9.3694 5.0960 28 6 7.7289 -8.0893 4.8351 29 6 1.1804 -4.7519 0.6111 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 3.0481 -3.2561 -1.8692 33 1 1.5126 -4.1428 -2.0250 34 1 4.0987 -5.2540 -0.8438 35 1 3.4487 -5.6311 -2.4572 36 1 1.4010 -6.5633 -1.4140 37 1 2.8565 -7.4002 -0.8236 38 1 3.5722 -5.0583 1.5222 39 1 7.4135 -5.2366 4.1199 40 1 5.0875 -9.7182 2.4560 41 1 4.5327 -9.5436 4.1427 42 1 7.3813 -10.0177 3.1510 43 1 6.4067 -11.0781 4.1936 44 1 8.6509 -8.2183 4.2683 45 1 7.9404 -7.5812 5.7760 46 1 0.9204 -4.4815 1.6346 47 1 0.2701 -4.8583 0.0212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981243267.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:37 Heat of formation + Delta-G solvation = -65.437167 kcal Electronic energy + Delta-G solvation = -29288.262098 eV Core-core repulsion = 25244.396706 eV Total energy + Delta-G solvation = -4043.865392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.05728 -40.01004 -38.84591 -37.95085 -34.61424 -33.84298 -33.08712 -32.32009 -31.18788 -30.22399 -28.95569 -27.87675 -26.54112 -24.32824 -23.73249 -23.20095 -22.05485 -21.09144 -20.45144 -19.97003 -18.83279 -18.32997 -17.18615 -16.76936 -16.59077 -16.31567 -15.59352 -15.52094 -15.39618 -15.18895 -14.72176 -14.41985 -14.26469 -13.79345 -13.63601 -13.49846 -13.46180 -13.08041 -12.95080 -12.51018 -12.47761 -12.10867 -11.91420 -11.87579 -11.76857 -11.22658 -11.02932 -10.92085 -10.80914 -10.45883 -10.36558 -10.21186 -10.17948 -10.02416 -9.78011 -9.70600 -9.55883 -9.12382 -8.91423 -8.76139 -6.99771 -5.80285 -3.09233 0.89295 1.96317 2.49935 3.07904 3.18166 3.40193 3.45091 3.45834 3.48098 4.15362 4.36063 4.53864 4.58550 4.65706 4.87424 4.95032 4.96036 5.02526 5.05521 5.14019 5.17433 5.35170 5.45854 5.50704 5.54385 5.58375 5.65547 5.70690 5.72336 5.78694 5.83352 5.93624 6.02611 6.05064 6.06301 6.19502 6.25858 6.45565 6.49335 6.55769 6.61191 6.68410 6.78161 6.91327 7.05685 7.48545 7.66624 8.05607 8.38107 9.49492 10.06657 10.41241 11.42372 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015581 B = 0.002802 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.600402 B = 9990.192708 C =11224.381928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.180 3.820 11 H 0.041 0.959 12 C -0.136 4.136 13 C -0.116 4.116 14 C -0.127 4.127 15 C 0.151 3.849 16 H 0.087 0.913 17 N -0.704 5.704 18 C 0.601 3.399 19 O -0.524 6.524 20 C -0.062 4.062 21 O -0.163 6.163 22 C 0.017 3.983 23 C -0.242 4.242 24 C -0.088 4.088 25 C -0.085 4.085 26 C 0.062 3.938 27 O -0.379 6.379 28 C 0.137 3.863 29 C -0.134 4.134 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.408 0.592 39 H 0.212 0.788 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.070 0.930 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.058 -18.765 6.345 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.070 3.930 11 H 0.059 0.941 12 C -0.177 4.177 13 C -0.155 4.155 14 C -0.166 4.166 15 C 0.046 3.954 16 H 0.105 0.895 17 N -0.355 5.355 18 C 0.387 3.613 19 O -0.403 6.403 20 C -0.114 4.114 21 O -0.059 6.059 22 C -0.052 4.052 23 C -0.244 4.244 24 C -0.091 4.091 25 C -0.122 4.122 26 C -0.014 4.014 27 O -0.298 6.298 28 C 0.060 3.940 29 C -0.173 4.173 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.245 0.755 39 H 0.228 0.772 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.072 0.928 43 H 0.119 0.881 44 H 0.085 0.915 45 H 0.124 0.876 46 H 0.089 0.911 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.667 -19.173 6.301 24.374 hybrid contribution 0.461 1.669 -0.229 1.747 sum 14.128 -17.504 6.072 23.299 Atomic orbital electron populations 1.69667 1.05099 1.25557 1.57713 1.24739 0.95504 0.97685 1.03021 0.86147 0.78785 0.84237 0.77197 1.20573 1.21890 1.21880 1.19259 0.90966 0.84088 1.42605 0.91190 1.42420 1.05788 0.99680 1.88573 1.20151 0.93909 0.85999 0.92960 0.94086 1.22284 0.99799 0.95161 1.00449 1.21516 0.98480 0.95661 0.99797 1.21904 1.00729 0.98619 0.95324 1.21062 0.84724 0.98721 0.90851 0.89452 1.46147 1.27902 1.10239 1.51224 1.16517 0.81246 0.85044 0.78471 1.90842 1.62155 1.25538 1.61780 1.21517 0.98388 0.84022 1.07435 1.84367 1.32993 1.32939 1.55622 1.23648 0.89885 0.96578 0.95130 1.21003 1.01418 0.94887 1.07091 1.20168 0.94661 0.96891 0.97357 1.20871 0.98962 0.88776 1.03638 1.22703 0.94257 0.96216 0.88254 1.87982 1.77913 1.31397 1.32493 1.21025 0.91946 0.82332 0.98698 1.22147 0.99300 0.93418 1.02401 0.93549 0.78233 0.92045 0.92466 0.92688 0.92751 0.90880 0.92023 0.75453 0.77151 0.88434 0.89179 0.92805 0.88091 0.91543 0.87591 0.91119 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.42 5.12 -53.43 -0.27 -17.69 16 10 C 0.18 3.34 2.60 -67.93 -0.18 3.16 16 11 H 0.04 0.77 6.44 -51.93 -0.33 0.44 16 12 C -0.14 -2.33 5.50 -26.73 -0.15 -2.48 16 13 C -0.12 -1.62 5.77 -26.73 -0.15 -1.78 16 14 C -0.13 -1.67 5.60 -26.73 -0.15 -1.82 16 15 C 0.15 2.08 2.78 -67.91 -0.19 1.89 16 16 H 0.09 1.22 7.57 -51.93 -0.39 0.82 16 17 N -0.70 -9.70 4.23 -55.10 -0.23 -9.94 16 18 C 0.60 8.68 7.75 -12.86 -0.10 8.58 16 19 O -0.52 -8.45 15.30 5.19 0.08 -8.37 16 20 C -0.06 -0.83 7.11 -37.27 -0.27 -1.09 16 21 O -0.16 -1.99 10.44 2.33 0.02 -1.97 16 22 C 0.02 0.16 12.06 29.21 0.35 0.51 16 23 C -0.24 -2.43 6.04 -105.01 -0.63 -3.06 16 24 C -0.09 -1.07 6.02 -104.58 -0.63 -1.70 16 25 C -0.09 -0.90 5.70 -27.51 -0.16 -1.06 16 26 C 0.06 0.53 6.75 37.51 0.25 0.78 16 27 O -0.38 -3.78 10.70 -35.23 -0.38 -4.16 16 28 C 0.14 1.08 7.27 36.02 0.26 1.34 16 29 C -0.13 -2.09 5.08 -26.71 -0.14 -2.23 16 30 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.77 7.60 -51.93 -0.39 0.38 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.41 5.63 6.63 -40.82 -0.27 5.36 16 39 H 0.21 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.10 1.05 7.64 -51.93 -0.40 0.65 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 43 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 47 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -32.24 376.73 -8.67 -40.91 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.15 Total: 11.50 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.12 Total: -5.99 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.22 Total: -54.63 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.27 Total: -14.49 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.24 -8.67 -40.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981243267.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.528 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds