Wall clock time and date at job start Tue Mar 31 2020 21:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00014 * 2 1 4 4 H 1.48501 * 109.47442 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47322 * 299.99986 * 3 2 1 6 6 H 1.48500 * 109.47257 * 60.00001 * 3 2 1 7 7 C 1.38806 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99828 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00419 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00173 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.46955 * 34.99431 * 10 9 7 12 12 C 1.53002 * 109.46688 * 274.99450 * 10 9 7 13 13 C 1.52997 * 109.46817 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47127 * 60.00361 * 13 12 10 15 15 C 1.52999 * 109.46626 * 299.99539 * 14 13 12 16 16 H 1.09002 * 109.46719 * 180.02562 * 15 14 13 17 17 N 1.46497 * 109.47704 * 300.00272 * 15 14 13 18 18 C 1.34778 * 119.99664 * 275.00456 * 17 15 14 19 19 O 1.21694 * 120.00417 * 359.97438 * 18 17 15 20 20 C 1.46660 * 120.00074 * 179.97438 * 18 17 15 21 21 O 1.35398 * 126.11554 * 0.02562 * 20 18 17 22 22 C 1.34395 * 109.47674 * 179.97438 * 21 20 18 23 23 C 1.33907 * 108.56081 * 359.97438 * 22 21 20 24 24 C 1.35181 * 126.12069 * 179.70916 * 20 18 17 25 25 C 1.50732 * 130.57437 * 1.00236 * 24 20 18 26 26 C 1.53680 * 107.50193 * 163.69809 * 25 24 20 27 27 O 1.42898 * 109.97285 * 48.01722 * 26 25 24 28 28 C 1.43517 * 114.76232 * 287.61145 * 27 26 25 29 29 C 1.52996 * 109.47258 * 154.99816 * 10 9 7 30 30 H 0.97001 * 120.00197 * 0.02562 * 1 2 3 31 31 H 0.96998 * 119.99819 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47070 * 60.00104 * 12 10 9 33 33 H 1.08996 * 109.47407 * 299.99704 * 12 10 9 34 34 H 1.09001 * 109.47502 * 300.00518 * 13 12 10 35 35 H 1.09001 * 109.47289 * 180.02562 * 13 12 10 36 36 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 37 37 H 1.09000 * 109.47050 * 179.97438 * 14 13 12 38 38 H 0.96991 * 120.00469 * 95.00097 * 17 15 14 39 39 H 1.07997 * 125.72188 * 179.97438 * 22 21 20 40 40 H 1.09005 * 110.01922 * 44.08882 * 25 24 20 41 41 H 1.09004 * 109.70201 * 283.12930 * 25 24 20 42 42 H 1.08999 * 109.38844 * 287.86221 * 26 25 24 43 43 H 1.08998 * 109.38418 * 168.16908 * 26 25 24 44 44 H 1.08994 * 109.82681 * 291.96494 * 28 27 26 45 45 H 1.09006 * 109.82426 * 171.03478 * 28 27 26 46 46 H 1.09001 * 109.46993 * 300.00050 * 29 10 9 47 47 H 1.09000 * 109.47380 * 59.99156 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0101 -1.2021 0.0005 8 1 3.0901 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9683 -3.5502 0.5917 12 6 2.4229 -4.0362 -1.4350 13 6 3.1884 -5.3609 -1.4337 14 6 2.3112 -6.4563 -0.8240 15 6 1.9465 -6.0768 0.6125 16 1 1.3220 -6.8574 1.0471 17 7 3.1699 -5.9331 1.4054 18 6 3.7366 -7.0165 1.9725 19 8 3.2317 -8.1141 1.8264 20 6 4.9617 -6.8727 2.7659 21 8 5.6246 -5.7172 3.0081 22 6 6.7012 -5.9699 3.7717 23 6 6.7428 -7.2835 4.0286 24 6 5.6278 -7.8692 3.3910 25 6 5.3497 -9.3495 3.4477 26 6 6.6302 -10.0418 3.9405 27 8 7.1348 -9.3694 5.0960 28 6 7.7289 -8.0893 4.8351 29 6 1.1804 -4.7519 0.6111 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 3.0481 -3.2561 -1.8692 33 1 1.5126 -4.1428 -2.0250 34 1 4.0987 -5.2540 -0.8438 35 1 3.4487 -5.6311 -2.4572 36 1 1.4010 -6.5633 -1.4140 37 1 2.8565 -7.4002 -0.8236 38 1 3.5722 -5.0583 1.5222 39 1 7.4135 -5.2366 4.1199 40 1 5.0875 -9.7182 2.4560 41 1 4.5327 -9.5436 4.1427 42 1 7.3813 -10.0177 3.1510 43 1 6.4067 -11.0781 4.1936 44 1 8.6509 -8.2183 4.2683 45 1 7.9404 -7.5812 5.7760 46 1 0.9204 -4.4815 1.6346 47 1 0.2701 -4.8583 0.0212 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981243267.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:22 Heat of formation + Delta-G solvation = -86.776434 kcal Electronic energy + Delta-G solvation = -29289.187438 eV Core-core repulsion = 25244.396706 eV Total energy + Delta-G solvation = -4044.790732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 37.38 seconds Orbital eigenvalues (eV) -43.89159 -41.18178 -39.54593 -39.23096 -36.21906 -34.81962 -34.37099 -33.11363 -32.90567 -31.34658 -30.04533 -29.41967 -27.20520 -25.74476 -25.10756 -24.10188 -23.28643 -22.52266 -21.45548 -20.79515 -20.10266 -19.37710 -18.99044 -17.62369 -17.45167 -17.17336 -16.83086 -16.67108 -16.29162 -16.19233 -15.96502 -15.73280 -15.50713 -15.06798 -15.02834 -14.79636 -14.49187 -14.26991 -13.91508 -13.66665 -13.55891 -13.25419 -13.12867 -13.05874 -12.90732 -12.83029 -12.58629 -12.23095 -12.03744 -11.97939 -11.90973 -11.64014 -11.51656 -11.39398 -11.03711 -10.87030 -10.80834 -10.51657 -10.19750 -9.64288 -8.99634 -7.93617 -5.21568 -0.02890 1.19480 1.47308 1.47569 1.57281 1.63000 2.02462 2.17862 2.56062 2.82809 3.39475 3.39945 3.55273 3.66251 3.79639 3.84706 3.89222 3.93891 4.20200 4.26724 4.26961 4.29917 4.32781 4.37120 4.50633 4.53283 4.63309 4.68927 4.71327 4.77722 4.79629 4.81935 4.90071 4.97274 5.03819 5.06862 5.14657 5.20488 5.26518 5.33790 5.39851 5.49402 5.53380 5.62229 5.75204 6.14111 6.28819 6.38643 6.95440 7.35080 8.11189 8.33909 9.30076 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015581 B = 0.002802 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.600402 B = 9990.192708 C =11224.381928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.233 4.233 8 H 0.075 0.925 9 N -0.737 5.737 10 C 0.177 3.823 11 H 0.040 0.960 12 C -0.127 4.127 13 C -0.106 4.106 14 C -0.121 4.121 15 C 0.158 3.842 16 H 0.090 0.910 17 N -0.702 5.702 18 C 0.602 3.398 19 O -0.548 6.548 20 C -0.096 4.096 21 O -0.178 6.178 22 C 0.031 3.969 23 C -0.254 4.254 24 C -0.095 4.095 25 C -0.087 4.087 26 C 0.065 3.935 27 O -0.397 6.397 28 C 0.134 3.866 29 C -0.122 4.122 30 H 0.249 0.751 31 H 0.373 0.627 32 H 0.040 0.960 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.408 0.592 39 H 0.255 0.745 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.119 0.881 44 H 0.087 0.913 45 H 0.127 0.873 46 H 0.060 0.940 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.511 -19.587 6.808 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.365 4.365 8 H 0.093 0.907 9 N -0.376 5.376 10 C 0.068 3.932 11 H 0.058 0.942 12 C -0.167 4.167 13 C -0.144 4.144 14 C -0.159 4.159 15 C 0.053 3.947 16 H 0.108 0.892 17 N -0.353 5.353 18 C 0.389 3.611 19 O -0.429 6.429 20 C -0.147 4.147 21 O -0.074 6.074 22 C -0.038 4.038 23 C -0.255 4.255 24 C -0.098 4.098 25 C -0.124 4.124 26 C -0.011 4.011 27 O -0.316 6.316 28 C 0.058 3.942 29 C -0.160 4.160 30 H 0.058 0.942 31 H 0.204 0.796 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.084 0.916 38 H 0.245 0.755 39 H 0.271 0.729 40 H 0.109 0.891 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.137 0.863 44 H 0.105 0.895 45 H 0.145 0.855 46 H 0.079 0.921 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 16.165 -20.032 6.760 26.614 hybrid contribution -0.226 1.865 -0.323 1.906 sum 15.939 -18.167 6.437 25.011 Atomic orbital electron populations 1.69816 1.06552 1.25817 1.59913 1.25506 0.96319 1.00928 1.04153 0.85148 0.78371 0.80224 0.76506 1.18949 1.22342 1.22249 1.19615 0.91339 0.85189 1.40326 0.90711 1.42626 1.05457 1.00907 1.88615 1.20358 0.93864 0.84773 0.94157 0.94185 1.22100 0.99596 0.96338 0.98675 1.21415 0.98047 0.93936 1.00977 1.21863 1.01145 0.98265 0.94648 1.20973 0.84717 0.97389 0.91587 0.89204 1.46105 1.27771 1.10181 1.51246 1.16659 0.81540 0.84657 0.78233 1.90815 1.63069 1.26210 1.62768 1.21321 0.99029 0.84954 1.09354 1.84350 1.33950 1.32706 1.56437 1.24564 0.88873 0.97408 0.92943 1.21344 1.01364 0.95393 1.07442 1.20574 0.95108 0.97427 0.96718 1.20909 0.99934 0.88439 1.03129 1.22768 0.93319 0.96699 0.88319 1.87959 1.78091 1.32280 1.33258 1.21308 0.91770 0.81352 0.99744 1.21989 0.99167 0.93329 1.01554 0.94166 0.79564 0.94077 0.92938 0.92649 0.91092 0.89663 0.91629 0.75501 0.72888 0.89065 0.90181 0.91736 0.86313 0.89524 0.85520 0.92080 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.84 13.06 21.65 0.28 -58.55 16 2 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 3 Si 0.97 45.63 29.55 68.60 2.03 47.65 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.23 -12.58 9.93 84.03 0.83 -11.75 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.74 -35.84 5.12 -322.94 -1.65 -37.49 16 10 C 0.18 6.53 2.60 44.99 0.12 6.65 16 11 H 0.04 1.50 6.44 -2.39 -0.02 1.48 16 12 C -0.13 -4.26 5.50 30.59 0.17 -4.09 16 13 C -0.11 -2.78 5.77 30.60 0.18 -2.60 16 14 C -0.12 -2.98 5.60 30.60 0.17 -2.81 16 15 C 0.16 4.23 2.78 45.01 0.13 4.36 16 16 H 0.09 2.43 7.57 -2.39 -0.02 2.42 16 17 N -0.70 -19.12 4.23 -446.45 -1.89 -21.01 16 18 C 0.60 17.35 7.75 86.44 0.67 18.02 16 19 O -0.55 -17.72 15.30 -4.33 -0.07 -17.79 16 20 C -0.10 -2.52 7.11 23.77 0.17 -2.35 16 21 O -0.18 -4.14 10.44 -14.56 -0.15 -4.29 16 22 C 0.03 0.49 12.06 66.83 0.81 1.29 16 23 C -0.25 -4.55 6.04 -20.12 -0.12 -4.67 16 24 C -0.10 -2.24 6.02 -19.84 -0.12 -2.36 16 25 C -0.09 -1.80 5.70 30.09 0.17 -1.63 16 26 C 0.07 1.01 6.75 72.21 0.49 1.49 16 27 O -0.40 -7.07 10.70 -148.98 -1.59 -8.67 16 28 C 0.13 1.73 7.27 71.25 0.52 2.25 16 29 C -0.12 -3.77 5.08 30.61 0.16 -3.61 16 30 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.37 19.61 7.80 -92.71 -0.72 18.89 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.05 1.47 7.60 -2.39 -0.02 1.45 16 35 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.41 11.16 6.63 -92.71 -0.61 10.54 16 39 H 0.26 1.40 8.06 -2.91 -0.02 1.37 16 40 H 0.09 1.97 7.64 -2.38 -0.02 1.95 16 41 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 0.85 8.08 -2.39 -0.02 0.83 16 43 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -70.18 376.73 1.41 -68.77 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: -0.34 Total: 37.07 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 4.80 Total: -5.70 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -3.26 Total: -117.05 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.81 Total: -30.74 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -70.18 1.41 -68.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981243267.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.007 kcal (2) G-P(sol) polarization free energy of solvation -70.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 37.38 seconds