Wall clock time and date at job start Tue Mar 31 2020 22:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99986 * 2 1 4 4 H 1.48497 * 109.47440 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47064 * 300.00041 * 3 2 1 6 6 H 1.48504 * 109.47040 * 59.99511 * 3 2 1 7 7 C 1.38813 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00044 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00078 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00043 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.49892 * 324.92923 * 10 9 7 12 12 C 1.53185 * 109.50108 * 85.00013 * 10 9 7 13 13 N 1.46930 * 108.77617 * 65.34766 * 12 10 9 14 14 C 1.34777 * 120.63092 * 233.63195 * 13 12 10 15 15 O 1.21281 * 120.00060 * 174.74967 * 14 13 12 16 16 C 1.50706 * 120.00019 * 354.74772 * 14 13 12 17 17 C 1.54272 * 110.03070 * 275.35216 * 16 14 13 18 18 C 1.54966 * 104.15672 * 217.13584 * 17 16 14 19 19 C 1.54881 * 102.77758 * 37.89305 * 18 17 16 20 20 C 1.53874 * 110.03131 * 158.13718 * 16 14 13 21 21 C 1.46920 * 118.74020 * 53.61009 * 13 12 10 22 22 C 1.53194 * 108.77606 * 306.39419 * 21 13 12 23 23 C 1.53038 * 109.33952 * 54.61331 * 22 21 13 24 24 H 1.09006 * 109.45695 * 58.67624 * 23 22 21 25 25 C 1.53003 * 109.46024 * 178.63305 * 23 22 21 26 26 F 1.39897 * 109.47289 * 60.00154 * 25 23 22 27 27 F 1.39902 * 109.47310 * 180.02562 * 25 23 22 28 28 F 1.39902 * 109.46900 * 299.99873 * 25 23 22 29 29 H 0.96997 * 119.99981 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00356 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.58744 * 305.56247 * 12 10 9 32 32 H 1.08999 * 109.70673 * 185.20611 * 12 10 9 33 33 H 1.08998 * 110.01524 * 36.74242 * 16 14 13 34 34 H 1.08997 * 110.48864 * 335.78308 * 17 16 14 35 35 H 1.09005 * 110.48172 * 98.42939 * 17 16 14 36 36 H 1.09000 * 110.72169 * 279.57049 * 18 17 16 37 37 H 1.08999 * 110.91814 * 156.29920 * 18 17 16 38 38 H 1.09004 * 110.48244 * 203.40675 * 19 18 17 39 39 H 1.09000 * 110.49368 * 80.75984 * 19 18 17 40 40 H 1.09000 * 110.03022 * 238.56860 * 20 16 14 41 41 H 1.08995 * 110.03328 * 0.02562 * 20 16 14 42 42 H 1.08998 * 109.58941 * 186.60312 * 21 13 12 43 43 H 1.09008 * 109.70012 * 66.24619 * 21 13 12 44 44 H 1.09001 * 109.49524 * 174.58517 * 22 21 13 45 45 H 1.09006 * 109.49279 * 294.64906 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 2.9688 -3.5516 -0.5880 12 6 2.4218 -4.0360 1.4406 13 7 1.1842 -4.3006 2.1870 14 6 0.9323 -3.6627 3.3472 15 8 -0.1333 -3.8174 3.9053 16 6 1.9748 -2.7573 3.9511 17 6 2.9692 -3.5839 4.7924 18 6 3.2904 -2.6721 6.0036 19 6 1.9235 -2.0089 6.3050 20 6 1.3103 -1.7560 4.9122 21 6 0.2262 -5.2735 1.6444 22 6 -0.1127 -4.8804 0.2031 23 6 1.1806 -4.7538 -0.6052 24 1 1.7176 -5.7021 -0.5821 25 6 0.8433 -4.3945 -2.0538 26 9 0.1534 -3.1779 -2.0840 27 9 2.0254 -4.2793 -2.7931 28 9 0.0427 -5.3986 -2.6089 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.9627 -3.2141 1.9096 32 1 3.0455 -4.9299 1.4387 33 1 2.5060 -2.2228 3.1636 34 1 2.5066 -4.5126 5.1263 35 1 3.8732 -3.7911 4.2196 36 1 4.0333 -1.9212 5.7348 37 1 3.6299 -3.2616 6.8552 38 1 2.0652 -1.0676 6.8361 39 1 1.2916 -2.6829 6.8834 40 1 1.5199 -0.7355 4.5917 41 1 0.2340 -1.9253 4.9423 42 1 -0.6815 -5.2681 2.2477 43 1 0.6676 -6.2701 1.6571 44 1 -0.7473 -5.6462 -0.2432 45 1 -0.6384 -3.9254 0.2005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998235672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:03 Heat of formation + Delta-G solvation = -183.991427 kcal Electronic energy + Delta-G solvation = -31957.102575 eV Core-core repulsion = 27366.239544 eV Total energy + Delta-G solvation = -4590.863030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.54784 -47.12793 -46.86040 -40.19043 -38.07929 -36.54115 -34.03157 -32.98312 -31.36570 -29.37003 -28.50052 -28.47076 -26.65383 -24.04326 -23.46342 -22.44875 -21.24499 -20.54611 -19.56952 -18.42440 -17.80834 -17.70546 -17.58579 -17.11980 -16.48101 -15.77189 -15.26580 -14.94231 -14.69685 -14.38019 -14.16423 -13.99235 -13.71097 -13.53286 -13.42470 -13.25773 -13.20295 -13.05537 -13.00099 -12.78900 -12.53349 -12.48861 -12.19964 -11.88297 -11.45915 -11.04607 -11.01056 -10.95723 -10.92876 -10.90933 -10.86864 -10.64614 -10.60106 -10.44505 -10.15394 -10.01412 -9.75594 -9.26346 -9.08374 -8.27166 -7.04066 -5.82125 -3.13474 3.06265 3.24115 3.38794 3.42593 3.44184 3.47289 4.25382 4.35506 4.51263 4.55976 4.68899 4.80646 4.85948 5.05056 5.13479 5.27218 5.31756 5.37909 5.38955 5.52986 5.59662 5.62621 5.64177 5.69490 5.76331 5.83492 5.87481 5.88648 5.96875 5.99581 6.03765 6.05566 6.15901 6.21822 6.32151 6.44103 6.49711 6.56134 6.64509 6.93075 7.61805 7.81468 8.32904 8.64467 9.46354 9.97820 10.33036 11.39142 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.005938 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.642103 B = 4713.899344 C = 6595.551537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.001 4.001 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.071 0.929 9 N -0.711 5.711 10 C 0.163 3.837 11 H 0.073 0.927 12 C 0.088 3.912 13 N -0.598 5.598 14 C 0.536 3.464 15 O -0.554 6.554 16 C -0.113 4.113 17 C -0.107 4.107 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.113 4.113 21 C 0.121 3.879 22 C -0.133 4.133 23 C -0.138 4.138 24 H 0.107 0.893 25 C 0.456 3.544 26 F -0.155 7.155 27 F -0.188 7.188 28 F -0.199 7.199 29 H 0.255 0.745 30 H 0.390 0.610 31 H 0.096 0.904 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.796 -11.489 5.043 13.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.199 4.199 3 Si 0.733 3.267 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.089 0.911 9 N -0.355 5.355 10 C 0.051 3.949 11 H 0.091 0.909 12 C -0.038 4.038 13 N -0.330 5.330 14 C 0.326 3.674 15 O -0.432 6.432 16 C -0.134 4.134 17 C -0.145 4.145 18 C -0.160 4.160 19 C -0.159 4.159 20 C -0.151 4.151 21 C -0.002 4.002 22 C -0.171 4.171 23 C -0.159 4.159 24 H 0.125 0.875 25 C 0.401 3.599 26 F -0.136 7.136 27 F -0.170 7.170 28 F -0.180 7.180 29 H 0.065 0.935 30 H 0.227 0.773 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.313 -11.390 5.277 13.631 hybrid contribution 0.132 1.038 -0.573 1.193 sum 5.445 -10.352 4.705 12.607 Atomic orbital electron populations 1.69675 1.05080 1.25633 1.56221 1.24713 0.95366 0.97544 1.02236 0.86220 0.78837 0.84439 0.77226 1.20503 1.21890 1.21859 1.19153 0.90855 0.83762 1.44280 0.91066 1.42526 1.06102 0.98809 1.88016 1.20577 0.94684 0.86251 0.93429 0.90925 1.22657 0.85518 1.00443 0.95178 1.47834 1.21183 1.41960 1.22016 1.20432 0.87816 0.79364 0.79834 1.90603 1.25907 1.64361 1.62353 1.21948 0.95880 0.96365 0.99181 1.22277 0.97902 0.98130 0.96218 1.22497 0.97593 0.98576 0.97339 1.22347 0.96083 1.00197 0.97309 1.22085 1.01664 0.98263 0.93079 1.21390 0.94450 0.91040 0.93351 1.21944 0.95588 1.04299 0.95297 1.22744 1.00819 1.02799 0.89523 0.87524 1.20472 0.74391 0.75184 0.89807 1.93315 1.79394 1.44149 1.96710 1.93134 1.47974 1.95985 1.79894 1.93118 1.75107 1.61864 1.87946 0.93462 0.77285 0.88625 0.92604 0.87553 0.91685 0.91205 0.91297 0.91772 0.91874 0.91797 0.91295 0.89983 0.88785 0.91849 0.90245 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 13.06 55.49 0.72 -26.06 16 2 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 3 Si 0.90 21.54 29.55 -169.99 -5.02 16.51 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.30 9.93 -15.06 -0.15 -6.44 16 8 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 9 N -0.71 -15.87 3.69 -53.31 -0.20 -16.07 16 10 C 0.16 2.77 2.45 -67.81 -0.17 2.60 16 11 H 0.07 1.24 7.71 -51.93 -0.40 0.84 16 12 C 0.09 1.29 5.92 -3.71 -0.02 1.27 16 13 N -0.60 -9.51 2.89 -172.77 -0.50 -10.01 16 14 C 0.54 9.62 6.71 -10.98 -0.07 9.55 16 15 O -0.55 -11.54 14.90 5.56 0.08 -11.46 16 16 C -0.11 -1.77 2.50 -90.65 -0.23 -2.00 16 17 C -0.11 -1.32 6.36 -25.03 -0.16 -1.48 16 18 C -0.12 -1.37 6.91 -24.70 -0.17 -1.54 16 19 C -0.12 -1.55 6.83 -25.08 -0.17 -1.72 16 20 C -0.11 -1.81 6.34 -25.61 -0.16 -1.97 16 21 C 0.12 1.71 6.44 -3.71 -0.02 1.69 16 22 C -0.13 -1.95 4.95 -26.61 -0.13 -2.09 16 23 C -0.14 -2.03 2.01 -90.58 -0.18 -2.21 16 24 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 25 C 0.46 7.70 2.69 37.16 0.10 7.80 16 26 F -0.15 -3.26 14.40 2.25 0.03 -3.22 16 27 F -0.19 -3.25 16.77 2.25 0.04 -3.22 16 28 F -0.20 -3.11 16.77 2.25 0.04 -3.08 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.39 9.69 4.94 -40.82 -0.20 9.49 16 31 H 0.10 1.48 5.41 -51.93 -0.28 1.19 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 1.79 6.15 -51.93 -0.32 1.47 16 34 H 0.06 0.82 7.85 -51.93 -0.41 0.42 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.51 6.64 -51.93 -0.34 1.16 16 42 H 0.09 1.46 7.00 -51.93 -0.36 1.09 16 43 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 44 H 0.08 1.00 7.77 -51.93 -0.40 0.59 16 45 H 0.09 1.66 6.11 -51.93 -0.32 1.34 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -30.42 357.90 -7.44 -37.86 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.39 Total: 10.01 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -1.64 Total: 3.34 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.03 Total: -52.14 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 9 Polarization: -9.62 SS G_CDS: 0.11 Total: -9.52 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.42 -7.44 -37.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998235672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.133 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds