Wall clock time and date at job start Tue Mar 31 2020 22:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99986 * 2 1 4 4 H 1.48497 * 109.47440 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47064 * 300.00041 * 3 2 1 6 6 H 1.48504 * 109.47040 * 59.99511 * 3 2 1 7 7 C 1.38813 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00044 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00078 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00043 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.49892 * 324.92923 * 10 9 7 12 12 C 1.53185 * 109.50108 * 85.00013 * 10 9 7 13 13 N 1.46930 * 108.77617 * 65.34766 * 12 10 9 14 14 C 1.34777 * 120.63092 * 233.63195 * 13 12 10 15 15 O 1.21281 * 120.00060 * 174.74967 * 14 13 12 16 16 C 1.50706 * 120.00019 * 354.74772 * 14 13 12 17 17 C 1.54272 * 110.03070 * 275.35216 * 16 14 13 18 18 C 1.54966 * 104.15672 * 217.13584 * 17 16 14 19 19 C 1.54881 * 102.77758 * 37.89305 * 18 17 16 20 20 C 1.53874 * 110.03131 * 158.13718 * 16 14 13 21 21 C 1.46920 * 118.74020 * 53.61009 * 13 12 10 22 22 C 1.53194 * 108.77606 * 306.39419 * 21 13 12 23 23 C 1.53038 * 109.33952 * 54.61331 * 22 21 13 24 24 H 1.09006 * 109.45695 * 58.67624 * 23 22 21 25 25 C 1.53003 * 109.46024 * 178.63305 * 23 22 21 26 26 F 1.39897 * 109.47289 * 60.00154 * 25 23 22 27 27 F 1.39902 * 109.47310 * 180.02562 * 25 23 22 28 28 F 1.39902 * 109.46900 * 299.99873 * 25 23 22 29 29 H 0.96997 * 119.99981 * 0.02562 * 1 2 3 30 30 H 0.96999 * 120.00356 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.58744 * 305.56247 * 12 10 9 32 32 H 1.08999 * 109.70673 * 185.20611 * 12 10 9 33 33 H 1.08998 * 110.01524 * 36.74242 * 16 14 13 34 34 H 1.08997 * 110.48864 * 335.78308 * 17 16 14 35 35 H 1.09005 * 110.48172 * 98.42939 * 17 16 14 36 36 H 1.09000 * 110.72169 * 279.57049 * 18 17 16 37 37 H 1.08999 * 110.91814 * 156.29920 * 18 17 16 38 38 H 1.09004 * 110.48244 * 203.40675 * 19 18 17 39 39 H 1.09000 * 110.49368 * 80.75984 * 19 18 17 40 40 H 1.09000 * 110.03022 * 238.56860 * 20 16 14 41 41 H 1.08995 * 110.03328 * 0.02562 * 20 16 14 42 42 H 1.08998 * 109.58941 * 186.60312 * 21 13 12 43 43 H 1.09008 * 109.70012 * 66.24619 * 21 13 12 44 44 H 1.09001 * 109.49524 * 174.58517 * 22 21 13 45 45 H 1.09006 * 109.49279 * 294.64906 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0017 11 1 2.9688 -3.5516 -0.5880 12 6 2.4218 -4.0360 1.4406 13 7 1.1842 -4.3006 2.1870 14 6 0.9323 -3.6627 3.3472 15 8 -0.1333 -3.8174 3.9053 16 6 1.9748 -2.7573 3.9511 17 6 2.9692 -3.5839 4.7924 18 6 3.2904 -2.6721 6.0036 19 6 1.9235 -2.0089 6.3050 20 6 1.3103 -1.7560 4.9122 21 6 0.2262 -5.2735 1.6444 22 6 -0.1127 -4.8804 0.2031 23 6 1.1806 -4.7538 -0.6052 24 1 1.7176 -5.7021 -0.5821 25 6 0.8433 -4.3945 -2.0538 26 9 0.1534 -3.1779 -2.0840 27 9 2.0254 -4.2793 -2.7931 28 9 0.0427 -5.3986 -2.6089 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.9627 -3.2141 1.9096 32 1 3.0455 -4.9299 1.4387 33 1 2.5060 -2.2228 3.1636 34 1 2.5066 -4.5126 5.1263 35 1 3.8732 -3.7911 4.2196 36 1 4.0333 -1.9212 5.7348 37 1 3.6299 -3.2616 6.8552 38 1 2.0652 -1.0676 6.8361 39 1 1.2916 -2.6829 6.8834 40 1 1.5199 -0.7355 4.5917 41 1 0.2340 -1.9253 4.9423 42 1 -0.6815 -5.2681 2.2477 43 1 0.6676 -6.2701 1.6571 44 1 -0.7473 -5.6462 -0.2432 45 1 -0.6384 -3.9254 0.2005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998235672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:02 Heat of formation + Delta-G solvation = -201.484154 kcal Electronic energy + Delta-G solvation = -31957.861116 eV Core-core repulsion = 27366.239544 eV Total energy + Delta-G solvation = -4591.621572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.92396 -48.45345 -48.33886 -41.48805 -39.35614 -37.78833 -35.69426 -34.38876 -32.96398 -30.75856 -29.84403 -29.56284 -27.96047 -25.86010 -24.70367 -23.84999 -22.49729 -21.53270 -20.86474 -19.84235 -19.19996 -19.09298 -19.01243 -18.70375 -17.82465 -17.08093 -16.49004 -16.48386 -15.97507 -15.91376 -15.51979 -15.36982 -15.13222 -14.98994 -14.82254 -14.59733 -14.52869 -14.40611 -14.33556 -14.18143 -13.91264 -13.75086 -13.53066 -13.21918 -12.90249 -12.77959 -12.59277 -12.28773 -12.16830 -12.06303 -11.99677 -11.94727 -11.90343 -11.70842 -11.60270 -11.50479 -11.32263 -11.02897 -10.57126 -9.65351 -8.86577 -7.87217 -5.14597 1.46960 1.48393 1.56775 1.70474 1.93938 2.19685 2.57975 2.96139 3.08079 3.24632 3.46998 3.54208 3.70630 3.75768 3.85261 3.91568 3.99849 4.07384 4.19449 4.26344 4.36334 4.50452 4.54427 4.59776 4.65761 4.68761 4.72308 4.77302 4.83291 4.83777 4.93259 4.98941 5.01704 5.10115 5.22342 5.24051 5.30840 5.39246 5.48466 5.57888 5.71543 6.31208 6.50929 7.30227 7.40982 8.14591 8.35986 9.35845 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.009935 B = 0.005938 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2817.642103 B = 4713.899344 C = 6595.551537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.956 3.044 4 H -0.258 1.258 5 H -0.306 1.306 6 H -0.302 1.302 7 C -0.224 4.224 8 H 0.085 0.915 9 N -0.724 5.724 10 C 0.153 3.847 11 H 0.081 0.919 12 C 0.093 3.907 13 N -0.597 5.597 14 C 0.525 3.475 15 O -0.595 6.595 16 C -0.112 4.112 17 C -0.098 4.098 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.119 4.119 21 C 0.120 3.880 22 C -0.126 4.126 23 C -0.126 4.126 24 H 0.158 0.842 25 C 0.451 3.549 26 F -0.186 7.186 27 F -0.190 7.190 28 F -0.190 7.190 29 H 0.243 0.757 30 H 0.375 0.625 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.012 -14.167 5.594 17.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.787 3.213 4 H -0.182 1.182 5 H -0.234 1.234 6 H -0.230 1.230 7 C -0.356 4.356 8 H 0.103 0.897 9 N -0.366 5.366 10 C 0.043 3.957 11 H 0.099 0.901 12 C -0.031 4.031 13 N -0.328 5.328 14 C 0.315 3.685 15 O -0.476 6.476 16 C -0.133 4.133 17 C -0.136 4.136 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.157 4.157 21 C -0.002 4.002 22 C -0.165 4.165 23 C -0.146 4.146 24 H 0.175 0.825 25 C 0.397 3.603 26 F -0.168 7.168 27 F -0.172 7.172 28 F -0.172 7.172 29 H 0.052 0.948 30 H 0.210 0.790 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.092 0.908 43 H 0.127 0.873 44 H 0.123 0.877 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.610 -14.126 5.808 17.533 hybrid contribution -0.877 1.760 -0.834 2.136 sum 7.733 -12.366 4.974 15.410 Atomic orbital electron populations 1.69845 1.06669 1.25192 1.59830 1.25383 0.95914 1.00560 1.04389 0.85317 0.78941 0.81122 0.75892 1.18163 1.23376 1.22990 1.19580 0.91469 0.84677 1.39866 0.89722 1.42694 1.05664 1.00171 1.88026 1.20912 0.94784 0.84775 0.95263 0.90143 1.22657 0.85322 1.02619 0.92529 1.47963 1.21843 1.41610 1.21356 1.20884 0.87689 0.79490 0.80463 1.90581 1.27491 1.65798 1.63761 1.21973 0.95938 0.96300 0.99102 1.22284 0.97556 0.97520 0.96259 1.22506 0.96417 0.98664 0.97669 1.22328 0.97026 1.01118 0.95016 1.22089 0.99974 0.97797 0.95861 1.21550 0.93963 0.92586 0.92120 1.21870 0.95760 1.02704 0.96126 1.22791 1.00625 1.03934 0.87284 0.82484 1.20860 0.74088 0.74251 0.91112 1.93263 1.80190 1.46403 1.96908 1.93127 1.47925 1.95965 1.80151 1.93130 1.74938 1.61131 1.87989 0.94780 0.79014 0.89331 0.87426 0.88787 0.91817 0.88786 0.90373 0.89336 0.90626 0.91976 0.92702 0.93391 0.90777 0.87292 0.87729 0.93845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.95 13.06 21.65 0.28 -58.67 16 2 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 3 Si 0.96 45.29 29.55 68.60 2.03 47.32 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.31 -15.00 7.11 99.48 0.71 -14.29 16 6 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 7 C -0.22 -11.26 9.93 84.04 0.83 -10.43 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 9 N -0.72 -32.23 3.69 -322.59 -1.19 -33.42 16 10 C 0.15 4.78 2.45 45.07 0.11 4.89 16 11 H 0.08 2.45 7.71 -2.39 -0.02 2.43 16 12 C 0.09 2.40 5.92 86.36 0.51 2.91 16 13 N -0.60 -17.83 2.89 -818.91 -2.37 -20.20 16 14 C 0.52 18.77 6.71 87.66 0.59 19.36 16 15 O -0.59 -25.65 14.90 -3.03 -0.05 -25.69 16 16 C -0.11 -3.46 2.50 -10.81 -0.03 -3.49 16 17 C -0.10 -2.14 6.36 31.70 0.20 -1.94 16 18 C -0.12 -2.22 6.91 31.91 0.22 -2.00 16 19 C -0.12 -2.86 6.83 31.67 0.22 -2.65 16 20 C -0.12 -3.94 6.34 31.32 0.20 -3.74 16 21 C 0.12 3.12 6.44 86.36 0.56 3.68 16 22 C -0.13 -3.49 4.95 30.67 0.15 -3.34 16 23 C -0.13 -3.30 2.01 -10.77 -0.02 -3.33 16 24 H 0.16 2.62 8.14 -2.38 -0.02 2.60 16 25 C 0.45 14.45 2.69 71.98 0.19 14.64 16 26 F -0.19 -7.96 14.40 44.97 0.65 -7.31 16 27 F -0.19 -6.15 16.77 44.97 0.75 -5.39 16 28 F -0.19 -5.55 16.77 44.97 0.75 -4.80 16 29 H 0.24 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.38 19.24 4.94 -92.71 -0.46 18.78 16 31 H 0.09 2.46 5.41 -2.39 -0.01 2.45 16 32 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.09 3.12 6.15 -2.39 -0.01 3.10 16 34 H 0.06 1.43 7.85 -2.39 -0.02 1.41 16 35 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 1.89 6.64 -2.39 -0.02 1.87 16 42 H 0.07 2.27 7.00 -2.39 -0.02 2.25 16 43 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.10 2.36 7.77 -2.39 -0.02 2.34 16 45 H 0.04 1.64 6.11 -2.38 -0.01 1.62 16 Total: -1.00 -71.47 357.90 5.63 -65.84 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.56 Total: 31.16 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 4.20 Total: 11.17 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -3.27 Total: -112.29 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 9 Polarization: -19.66 SS G_CDS: 2.16 Total: -17.50 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -71.47 5.63 -65.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998235672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.642 kcal (2) G-P(sol) polarization free energy of solvation -71.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds