Wall clock time and date at job start Tue Mar 31 2020 22:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00128 * 2 1 4 4 H 1.48499 * 109.47332 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47143 * 299.99997 * 3 2 1 6 6 H 1.48496 * 109.47198 * 59.99882 * 3 2 1 7 7 C 1.38808 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00650 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00026 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.52029 * 34.92305 * 10 9 7 12 12 C 1.52758 * 109.56390 * 274.96786 * 10 9 7 13 13 N 1.46930 * 109.00702 * 185.55002 * 12 10 9 14 14 C 1.34771 * 120.63120 * 233.58901 * 13 12 10 15 15 O 1.21276 * 120.00172 * 359.71408 * 14 13 12 16 16 C 1.50704 * 119.99738 * 179.72198 * 14 13 12 17 17 C 1.54270 * 110.48466 * 179.97438 * 16 14 13 18 18 C 1.53869 * 106.63967 * 217.73352 * 17 16 14 19 19 C 1.54268 * 106.60115 * 359.97438 * 18 17 16 20 20 C 1.54895 * 104.19476 * 23.60777 * 19 18 17 21 21 C 1.46933 * 118.73615 * 53.31002 * 13 12 10 22 22 C 1.53194 * 108.77165 * 306.64096 * 21 13 12 23 23 C 1.53038 * 109.49673 * 154.99990 * 10 9 7 24 24 H 1.08999 * 109.46149 * 61.29608 * 23 10 9 25 25 C 1.53001 * 109.46278 * 301.34093 * 23 10 9 26 26 F 1.39907 * 109.47030 * 299.93430 * 25 23 10 27 27 F 1.39902 * 109.47213 * 59.92748 * 25 23 10 28 28 F 1.39894 * 109.47334 * 179.97438 * 25 23 10 29 29 H 0.97006 * 120.00045 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00598 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.51244 * 65.67188 * 12 10 9 32 32 H 1.08998 * 109.43228 * 305.38342 * 12 10 9 33 33 H 1.08997 * 110.53725 * 302.60579 * 16 14 13 34 34 H 1.09002 * 110.03399 * 98.42351 * 17 16 14 35 35 H 1.08995 * 110.02943 * 337.04251 * 17 16 14 36 36 H 1.08999 * 110.03405 * 119.26051 * 18 17 16 37 37 H 1.09001 * 110.03705 * 240.64196 * 18 17 16 38 38 H 1.08997 * 110.48788 * 142.28685 * 19 18 17 39 39 H 1.09001 * 110.48482 * 264.93365 * 19 18 17 40 40 H 1.09001 * 110.75082 * 80.37254 * 20 19 18 41 41 H 1.08991 * 110.75596 * 203.55944 * 20 19 18 42 42 H 1.08997 * 109.58721 * 66.42844 * 21 13 12 43 43 H 1.08999 * 109.58640 * 186.85962 * 21 13 12 44 44 H 1.09010 * 109.49462 * 174.58394 * 22 21 13 45 45 H 1.08991 * 109.50163 * 294.68061 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 2.9696 -3.5511 0.5887 12 6 2.4217 -4.0375 -1.4334 13 7 3.0363 -5.3721 -1.4330 14 6 4.2394 -5.5741 -2.0058 15 8 4.8230 -4.6508 -2.5327 16 6 4.8595 -6.9476 -1.9916 17 6 6.2277 -6.9296 -2.7041 18 6 6.3391 -8.2550 -3.4778 19 6 5.0347 -9.0335 -3.2085 20 6 4.0092 -7.9365 -2.8285 21 6 2.3172 -6.4809 -0.7908 22 6 1.9572 -6.0715 0.6408 23 6 1.1810 -4.7529 0.6102 24 1 0.2810 -4.8751 0.0076 25 6 0.7897 -4.3586 2.0358 26 9 1.9444 -4.2022 2.8101 27 9 0.0802 -3.1531 2.0081 28 9 -0.0125 -5.3601 2.5931 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 3.1273 -3.3104 -1.8353 32 1 1.5195 -4.0510 -2.0450 33 1 4.9665 -7.3083 -0.9686 34 1 7.0302 -6.8574 -1.9699 35 1 6.2776 -6.0884 -3.3953 36 1 6.4422 -8.0570 -4.5447 37 1 7.1960 -8.8256 -3.1198 38 1 4.7133 -9.5616 -4.1062 39 1 5.1706 -9.7313 -2.3822 40 1 3.6172 -7.4486 -3.7208 41 1 3.1992 -8.3552 -2.2315 42 1 1.4063 -6.6975 -1.3489 43 1 2.9539 -7.3653 -0.7688 44 1 1.3404 -6.8462 1.0965 45 1 2.8697 -5.9431 1.2229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998235678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:15 Heat of formation + Delta-G solvation = -185.121813 kcal Electronic energy + Delta-G solvation = -31102.096465 eV Core-core repulsion = 26511.184418 eV Total energy + Delta-G solvation = -4590.912048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.54377 -47.11185 -46.85818 -40.45129 -38.16203 -36.90222 -34.65101 -32.91727 -31.43165 -29.75704 -28.90671 -28.42894 -26.70879 -24.15766 -23.54620 -21.99933 -21.66729 -20.72610 -20.09525 -18.82039 -17.86373 -17.71984 -17.64233 -17.21770 -16.67992 -15.96728 -15.74767 -15.06621 -14.72226 -14.51302 -14.24535 -13.96156 -13.70623 -13.64424 -13.53962 -13.47968 -13.34583 -13.08484 -13.02545 -12.97613 -12.80947 -12.57584 -12.37872 -11.97246 -11.54676 -11.45717 -11.34937 -11.29379 -11.14471 -11.00475 -10.99013 -10.82669 -10.76034 -10.54937 -10.33817 -9.98628 -9.78365 -9.52890 -9.12444 -8.47949 -7.07426 -5.80452 -3.12451 2.76179 3.09562 3.26667 3.44197 3.50724 3.52752 4.19246 4.27178 4.30271 4.34430 4.44438 4.53022 4.61624 4.79437 4.88537 5.01769 5.13833 5.14658 5.23797 5.28629 5.29268 5.36547 5.39805 5.41438 5.48261 5.56716 5.61388 5.70444 5.71342 5.77233 5.86697 5.88787 5.97091 6.00635 6.07349 6.10338 6.22850 6.51552 6.54395 6.80189 7.56702 7.69686 8.33445 8.36235 9.48381 9.95946 10.31832 11.41010 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.004147 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.390793 B = 6750.205637 C = 8494.858612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.003 4.003 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.064 0.936 12 C 0.096 3.904 13 N -0.609 5.609 14 C 0.518 3.482 15 O -0.537 6.537 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.124 4.124 19 C -0.123 4.123 20 C -0.117 4.117 21 C 0.110 3.890 22 C -0.132 4.132 23 C -0.141 4.141 24 H 0.110 0.890 25 C 0.457 3.543 26 F -0.186 7.186 27 F -0.154 7.154 28 F -0.199 7.199 29 H 0.256 0.744 30 H 0.390 0.610 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.370 -21.350 -2.108 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.357 5.357 10 C 0.060 3.940 11 H 0.082 0.918 12 C -0.029 4.029 13 N -0.343 5.343 14 C 0.306 3.694 15 O -0.414 6.414 16 C -0.136 4.136 17 C -0.151 4.151 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.014 4.014 22 C -0.171 4.171 23 C -0.162 4.162 24 H 0.129 0.871 25 C 0.403 3.597 26 F -0.168 7.168 27 F -0.135 7.135 28 F -0.181 7.181 29 H 0.065 0.935 30 H 0.226 0.774 31 H 0.117 0.883 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.773 -20.640 -2.345 21.560 hybrid contribution -0.121 1.020 0.366 1.091 sum 5.651 -19.620 -1.980 20.513 Atomic orbital electron populations 1.69678 1.05099 1.25711 1.56723 1.24728 0.95470 0.97697 1.02109 0.86134 0.79005 0.83986 0.77160 1.20405 1.21767 1.21793 1.19223 0.91067 0.83625 1.43868 0.90926 1.42509 1.06061 0.99119 1.88006 1.20410 0.94392 0.85396 0.93792 0.91797 1.22632 0.98415 0.82214 0.99600 1.48282 1.19227 1.10625 1.56173 1.20510 0.80614 0.90459 0.77863 1.90691 1.61444 1.44384 1.44895 1.22171 0.96856 0.93060 1.01476 1.22074 0.94838 0.98497 0.99708 1.22148 0.97664 0.95931 1.00472 1.22356 0.95005 0.97358 1.01355 1.22637 0.97446 0.95502 0.99864 1.21796 0.97525 0.89831 0.92219 1.21990 1.01288 0.95714 0.98116 1.22830 1.03164 0.98676 0.91538 0.87146 1.20424 0.74740 0.75319 0.89248 1.93132 1.50034 1.95598 1.78033 1.93321 1.78513 1.45163 1.96511 1.93113 1.75092 1.62004 1.87885 0.93457 0.77370 0.88272 0.91691 0.88360 0.91571 0.89721 0.91769 0.91837 0.91476 0.91414 0.90889 0.90582 0.90906 0.88954 0.89552 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 2 C 0.00 -0.09 5.50 -17.43 -0.10 -0.19 16 3 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.25 -6.74 9.93 -15.06 -0.15 -6.89 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.71 -17.05 3.85 -53.52 -0.21 -17.26 16 10 C 0.17 3.23 2.23 -68.03 -0.15 3.08 16 11 H 0.06 1.31 7.78 -51.93 -0.40 0.91 16 12 C 0.10 1.68 5.99 -3.93 -0.02 1.66 16 13 N -0.61 -8.41 2.98 -173.03 -0.52 -8.92 16 14 C 0.52 7.57 7.06 -10.99 -0.08 7.49 16 15 O -0.54 -10.25 14.83 5.56 0.08 -10.17 16 16 C -0.11 -1.17 2.29 -90.07 -0.21 -1.37 16 17 C -0.11 -1.17 6.18 -25.61 -0.16 -1.33 16 18 C -0.12 -0.99 6.80 -25.62 -0.17 -1.16 16 19 C -0.12 -0.84 6.83 -25.07 -0.17 -1.01 16 20 C -0.12 -0.94 5.56 -24.70 -0.14 -1.07 16 21 C 0.11 1.06 5.55 -3.71 -0.02 1.04 16 22 C -0.13 -1.44 5.11 -26.61 -0.14 -1.58 16 23 C -0.14 -2.10 1.82 -90.58 -0.16 -2.27 16 24 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 25 C 0.46 7.82 2.68 37.16 0.10 7.92 16 26 F -0.19 -3.35 16.33 2.25 0.04 -3.32 16 27 F -0.15 -3.28 14.67 2.25 0.03 -3.25 16 28 F -0.20 -3.05 16.77 2.25 0.04 -3.02 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.39 9.87 6.55 -40.82 -0.27 9.60 16 31 H 0.10 2.08 7.01 -51.93 -0.36 1.71 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.10 0.85 7.59 -51.93 -0.39 0.45 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.09 6.84 -51.93 -0.36 0.73 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.68 8.05 -51.93 -0.42 0.26 16 41 H 0.08 0.48 6.30 -51.93 -0.33 0.15 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.66 4.47 -51.93 -0.23 0.43 16 44 H 0.09 0.76 7.77 -51.92 -0.40 0.35 16 45 H 0.08 0.92 7.84 -51.93 -0.41 0.52 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -32.04 358.38 -7.50 -39.54 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.50 Total: 5.84 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.57 Total: 4.31 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.00 Total: -52.90 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 9 Polarization: -9.69 SS G_CDS: 0.11 Total: -9.58 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.04 -7.50 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998235678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.581 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds