Wall clock time and date at job start Tue Mar 31 2020 22:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00128 * 2 1 4 4 H 1.48499 * 109.47332 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47143 * 299.99997 * 3 2 1 6 6 H 1.48496 * 109.47198 * 59.99882 * 3 2 1 7 7 C 1.38808 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00650 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99822 * 0.02562 * 7 2 1 10 10 C 1.46508 * 120.00026 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.52029 * 34.92305 * 10 9 7 12 12 C 1.52758 * 109.56390 * 274.96786 * 10 9 7 13 13 N 1.46930 * 109.00702 * 185.55002 * 12 10 9 14 14 C 1.34771 * 120.63120 * 233.58901 * 13 12 10 15 15 O 1.21276 * 120.00172 * 359.71408 * 14 13 12 16 16 C 1.50704 * 119.99738 * 179.72198 * 14 13 12 17 17 C 1.54270 * 110.48466 * 179.97438 * 16 14 13 18 18 C 1.53869 * 106.63967 * 217.73352 * 17 16 14 19 19 C 1.54268 * 106.60115 * 359.97438 * 18 17 16 20 20 C 1.54895 * 104.19476 * 23.60777 * 19 18 17 21 21 C 1.46933 * 118.73615 * 53.31002 * 13 12 10 22 22 C 1.53194 * 108.77165 * 306.64096 * 21 13 12 23 23 C 1.53038 * 109.49673 * 154.99990 * 10 9 7 24 24 H 1.08999 * 109.46149 * 61.29608 * 23 10 9 25 25 C 1.53001 * 109.46278 * 301.34093 * 23 10 9 26 26 F 1.39907 * 109.47030 * 299.93430 * 25 23 10 27 27 F 1.39902 * 109.47213 * 59.92748 * 25 23 10 28 28 F 1.39894 * 109.47334 * 179.97438 * 25 23 10 29 29 H 0.97006 * 120.00045 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00598 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.51244 * 65.67188 * 12 10 9 32 32 H 1.08998 * 109.43228 * 305.38342 * 12 10 9 33 33 H 1.08997 * 110.53725 * 302.60579 * 16 14 13 34 34 H 1.09002 * 110.03399 * 98.42351 * 17 16 14 35 35 H 1.08995 * 110.02943 * 337.04251 * 17 16 14 36 36 H 1.08999 * 110.03405 * 119.26051 * 18 17 16 37 37 H 1.09001 * 110.03705 * 240.64196 * 18 17 16 38 38 H 1.08997 * 110.48788 * 142.28685 * 19 18 17 39 39 H 1.09001 * 110.48482 * 264.93365 * 19 18 17 40 40 H 1.09001 * 110.75082 * 80.37254 * 20 19 18 41 41 H 1.08991 * 110.75596 * 203.55944 * 20 19 18 42 42 H 1.08997 * 109.58721 * 66.42844 * 21 13 12 43 43 H 1.08999 * 109.58640 * 186.85962 * 21 13 12 44 44 H 1.09010 * 109.49462 * 174.58394 * 22 21 13 45 45 H 1.08991 * 109.50163 * 294.68061 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0901 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6569 0.0005 11 1 2.9696 -3.5511 0.5887 12 6 2.4217 -4.0375 -1.4334 13 7 3.0363 -5.3721 -1.4330 14 6 4.2394 -5.5741 -2.0058 15 8 4.8230 -4.6508 -2.5327 16 6 4.8595 -6.9476 -1.9916 17 6 6.2277 -6.9296 -2.7041 18 6 6.3391 -8.2550 -3.4778 19 6 5.0347 -9.0335 -3.2085 20 6 4.0092 -7.9365 -2.8285 21 6 2.3172 -6.4809 -0.7908 22 6 1.9572 -6.0715 0.6408 23 6 1.1810 -4.7529 0.6102 24 1 0.2810 -4.8751 0.0076 25 6 0.7897 -4.3586 2.0358 26 9 1.9444 -4.2022 2.8101 27 9 0.0802 -3.1531 2.0081 28 9 -0.0125 -5.3601 2.5931 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3881 -0.0002 31 1 3.1273 -3.3104 -1.8353 32 1 1.5195 -4.0510 -2.0450 33 1 4.9665 -7.3083 -0.9686 34 1 7.0302 -6.8574 -1.9699 35 1 6.2776 -6.0884 -3.3953 36 1 6.4422 -8.0570 -4.5447 37 1 7.1960 -8.8256 -3.1198 38 1 4.7133 -9.5616 -4.1062 39 1 5.1706 -9.7313 -2.3822 40 1 3.6172 -7.4486 -3.7208 41 1 3.1992 -8.3552 -2.2315 42 1 1.4063 -6.6975 -1.3489 43 1 2.9539 -7.3653 -0.7688 44 1 1.3404 -6.8462 1.0965 45 1 2.8697 -5.9431 1.2229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998235678.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:13 Heat of formation + Delta-G solvation = -204.681899 kcal Electronic energy + Delta-G solvation = -31102.944654 eV Core-core repulsion = 26511.184418 eV Total energy + Delta-G solvation = -4591.760237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -50.94886 -48.46292 -48.37205 -41.55218 -39.29758 -37.88418 -36.27287 -34.38288 -33.05451 -30.90389 -29.81671 -29.48527 -27.98844 -26.01449 -24.68014 -23.44195 -22.72379 -21.48573 -21.20541 -19.86456 -19.41721 -19.08771 -19.05970 -18.72212 -17.91694 -17.08055 -16.93668 -16.41134 -15.93596 -15.80649 -15.53641 -15.42266 -15.16081 -15.07748 -14.82965 -14.66013 -14.53005 -14.49919 -14.38409 -14.09659 -14.05920 -13.90716 -13.63244 -13.11326 -12.99830 -12.84535 -12.59550 -12.32071 -12.24486 -12.14905 -12.12482 -12.00401 -11.83553 -11.68792 -11.60653 -11.58816 -11.22444 -11.14149 -10.69405 -9.78805 -9.04763 -7.97958 -5.27924 1.43186 1.44224 1.53643 1.63488 1.90679 1.99983 2.51405 2.90654 3.09437 3.13289 3.36003 3.45733 3.62905 3.67011 3.81389 3.88544 4.05759 4.09078 4.17685 4.22618 4.31278 4.46428 4.48952 4.51234 4.60421 4.62838 4.64754 4.66930 4.80315 4.88432 4.92607 5.02963 5.05715 5.15501 5.19449 5.28158 5.34368 5.36905 5.45188 5.53893 5.57019 6.22550 6.46607 7.21304 7.31411 7.97551 8.23993 9.24062 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.004147 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.390793 B = 6750.205637 C = 8494.858612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.059 4.059 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.064 0.936 9 N -0.725 5.725 10 C 0.174 3.826 11 H 0.042 0.958 12 C 0.111 3.889 13 N -0.606 5.606 14 C 0.509 3.491 15 O -0.595 6.595 16 C -0.107 4.107 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.116 4.116 20 C -0.113 4.113 21 C 0.105 3.895 22 C -0.126 4.126 23 C -0.131 4.131 24 H 0.127 0.873 25 C 0.453 3.547 26 F -0.194 7.194 27 F -0.184 7.184 28 F -0.184 7.184 29 H 0.252 0.748 30 H 0.383 0.617 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.131 0.869 44 H 0.124 0.876 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.431 -25.263 -1.739 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.253 4.253 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.082 0.918 9 N -0.366 5.366 10 C 0.063 3.937 11 H 0.060 0.940 12 C -0.015 4.015 13 N -0.339 5.339 14 C 0.299 3.701 15 O -0.475 6.475 16 C -0.128 4.128 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.151 4.151 21 C -0.016 4.016 22 C -0.164 4.164 23 C -0.151 4.151 24 H 0.145 0.855 25 C 0.399 3.601 26 F -0.176 7.176 27 F -0.165 7.165 28 F -0.165 7.165 29 H 0.061 0.939 30 H 0.217 0.783 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.149 0.851 44 H 0.142 0.858 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.851 -24.630 -1.965 25.391 hybrid contribution -0.084 2.180 0.272 2.199 sum 5.767 -22.450 -1.693 23.240 Atomic orbital electron populations 1.69798 1.06181 1.25940 1.58638 1.25389 0.96267 1.00478 1.03144 0.85244 0.78091 0.80605 0.76829 1.19909 1.21756 1.21825 1.19424 0.90888 0.85230 1.42004 0.91761 1.42562 1.05772 1.00071 1.88227 1.20462 0.93940 0.84911 0.94364 0.93997 1.22027 0.97451 0.83894 0.98112 1.48319 1.19303 1.10053 1.56201 1.21449 0.80237 0.91770 0.76603 1.90671 1.62932 1.46630 1.47315 1.22259 0.96613 0.90429 1.03490 1.22089 0.95374 0.98742 0.99425 1.22145 0.99364 0.94772 0.99724 1.22362 0.93361 0.96979 1.02674 1.22686 0.98225 0.94983 0.99195 1.22225 0.98978 0.89188 0.91174 1.22087 1.01129 0.93970 0.99250 1.22812 1.03531 0.99066 0.89725 0.85527 1.20752 0.74378 0.74587 0.90358 1.93116 1.50410 1.95635 1.78401 1.93264 1.79247 1.47344 1.96694 1.93135 1.74660 1.60957 1.87791 0.93915 0.78255 0.92667 0.91455 0.85502 0.91380 0.93323 0.92426 0.90365 0.90474 0.89270 0.92638 0.87572 0.88380 0.85118 0.85805 0.90500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.28 13.06 21.65 0.28 -58.00 16 2 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 3 Si 0.96 47.69 29.55 68.60 2.03 49.72 16 4 H -0.27 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 7 C -0.24 -13.76 9.93 84.03 0.83 -12.93 16 8 H 0.06 3.66 7.83 -2.91 -0.02 3.63 16 9 N -0.72 -35.62 3.85 -323.25 -1.24 -36.86 16 10 C 0.17 6.59 2.23 44.92 0.10 6.69 16 11 H 0.04 1.77 7.78 -2.39 -0.02 1.75 16 12 C 0.11 3.97 5.99 86.22 0.52 4.49 16 13 N -0.61 -15.87 2.98 -819.72 -2.44 -18.31 16 14 C 0.51 14.64 7.06 87.66 0.62 15.26 16 15 O -0.59 -23.89 14.83 -3.02 -0.04 -23.93 16 16 C -0.11 -1.91 2.29 -10.44 -0.02 -1.93 16 17 C -0.12 -2.34 6.18 31.32 0.19 -2.15 16 18 C -0.12 -1.65 6.80 31.32 0.21 -1.44 16 19 C -0.12 -1.09 6.83 31.67 0.22 -0.88 16 20 C -0.11 -1.37 5.56 31.91 0.18 -1.19 16 21 C 0.11 1.56 5.55 86.36 0.48 2.04 16 22 C -0.13 -2.22 5.11 30.67 0.16 -2.07 16 23 C -0.13 -3.66 1.82 -10.77 -0.02 -3.68 16 24 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 25 C 0.45 14.99 2.68 71.98 0.19 15.19 16 26 F -0.19 -6.85 16.33 44.97 0.73 -6.12 16 27 F -0.18 -7.94 14.67 44.97 0.66 -7.28 16 28 F -0.18 -5.16 16.77 44.97 0.75 -4.41 16 29 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 30 H 0.38 19.90 6.55 -92.71 -0.61 19.29 16 31 H 0.05 2.46 7.01 -2.39 -0.02 2.45 16 32 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.13 1.59 7.59 -2.39 -0.02 1.57 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.05 1.32 6.84 -2.39 -0.02 1.30 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.09 0.52 8.14 -2.39 -0.02 0.51 16 40 H 0.05 0.89 8.05 -2.39 -0.02 0.87 16 41 H 0.11 0.66 6.30 -2.39 -0.02 0.64 16 42 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.13 1.03 4.47 -2.39 -0.01 1.02 16 44 H 0.12 1.41 7.77 -2.38 -0.02 1.39 16 45 H 0.08 1.48 7.84 -2.39 -0.02 1.46 16 Total: -1.00 -75.56 358.38 5.26 -70.30 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.41 Total: 20.44 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 4.12 Total: 14.44 kcal Atomic # 7 Polarization: -109.76 SS G_CDS: -3.40 Total: -113.16 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.04 Total: -23.93 kcal Atomic # 9 Polarization: -19.95 SS G_CDS: 2.15 Total: -17.80 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -75.56 5.26 -70.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998235678.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.384 kcal (2) G-P(sol) polarization free energy of solvation -75.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds