Wall clock time and date at job start Tue Mar 31 2020 21:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86792 * 120.00323 * 2 1 4 4 H 1.48498 * 109.47358 * 269.99832 * 3 2 1 5 5 H 1.48502 * 109.47239 * 29.99855 * 3 2 1 6 6 H 1.48509 * 109.47357 * 149.99749 * 3 2 1 7 7 C 1.38818 * 119.99311 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99122 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00559 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00053 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.49979 * 34.93310 * 10 9 7 12 12 C 1.53623 * 109.66166 * 274.84455 * 10 9 7 13 13 N 1.46924 * 108.54458 * 294.85513 * 12 10 9 14 14 C 1.34774 * 120.63127 * 126.36834 * 13 12 10 15 15 O 1.21282 * 120.00285 * 359.71394 * 14 13 12 16 16 C 1.50702 * 119.99999 * 179.71659 * 14 13 12 17 17 C 1.52994 * 109.47353 * 179.97438 * 16 14 13 18 18 C 1.53782 * 113.61734 * 184.99947 * 17 16 14 19 19 C 1.53781 * 87.08260 * 220.02231 * 18 17 16 20 20 C 1.53786 * 87.17350 * 25.39213 * 19 18 17 21 21 C 1.46927 * 118.73485 * 306.08732 * 13 12 10 22 22 C 1.53194 * 108.77612 * 53.86454 * 21 13 12 23 23 C 1.53036 * 109.30995 * 305.36371 * 22 21 13 24 24 H 1.08998 * 109.45957 * 301.35448 * 23 22 21 25 25 C 1.53006 * 109.45895 * 181.38416 * 23 22 21 26 26 F 1.39896 * 109.46923 * 59.99970 * 25 23 22 27 27 F 1.39899 * 109.47162 * 179.97438 * 25 23 22 28 28 F 1.39904 * 109.47130 * 300.00182 * 25 23 22 29 29 H 0.97007 * 120.00044 * 0.02562 * 1 2 3 30 30 H 0.97008 * 119.99779 * 359.97438 * 9 7 2 31 31 H 1.08991 * 109.74120 * 175.11183 * 12 10 9 32 32 H 1.09003 * 109.65807 * 54.54395 * 12 10 9 33 33 H 1.09005 * 109.46716 * 60.00085 * 16 14 13 34 34 H 1.08998 * 109.47049 * 300.00101 * 16 14 13 35 35 H 1.08997 * 112.90864 * 316.25792 * 17 16 14 36 36 H 1.09001 * 113.61250 * 105.47049 * 18 17 16 37 37 H 1.08997 * 113.61225 * 334.56890 * 18 17 16 38 38 H 1.09002 * 113.61445 * 139.98212 * 19 18 17 39 39 H 1.09002 * 113.61408 * 270.79943 * 19 18 17 40 40 H 1.08993 * 113.61491 * 89.15923 * 20 19 18 41 41 H 1.09000 * 113.61138 * 220.06261 * 20 19 18 42 42 H 1.09008 * 109.58479 * 173.64925 * 21 13 12 43 43 H 1.08998 * 109.58797 * 293.93153 * 21 13 12 44 44 H 1.08998 * 109.49619 * 65.31279 * 22 21 13 45 45 H 1.08994 * 109.49983 * 185.37760 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9692 -3.5508 0.5889 12 6 2.4221 -4.0434 -1.4410 13 7 1.1809 -4.3048 -2.1825 14 6 0.9283 -3.6699 -3.3441 15 8 1.7268 -2.8701 -3.7842 16 6 -0.3464 -3.9536 -4.0962 17 6 -0.3859 -3.1077 -5.3704 18 6 -1.7047 -3.2317 -6.1516 19 6 -0.8545 -3.2300 -7.4330 20 6 0.3007 -3.7746 -6.5764 21 6 0.2233 -5.2763 -1.6366 22 6 -0.1138 -4.8801 -0.1957 23 6 1.1809 -4.7529 0.6103 24 1 1.7173 -5.7015 0.5877 25 6 0.8462 -4.3910 2.0587 26 9 0.0458 -5.3936 2.6168 27 9 2.0295 -4.2753 2.7959 28 9 0.1570 -3.1738 2.0880 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3881 0.0005 31 1 3.0409 -4.9406 -1.4363 32 1 2.9649 -3.2250 -1.9141 33 1 -1.2019 -3.7043 -3.4683 34 1 -0.3851 -5.0105 -4.3599 35 1 -0.0713 -2.0773 -5.2055 36 1 -2.3524 -2.3602 -6.0561 37 1 -2.2290 -4.1712 -5.9768 38 1 -1.2048 -3.9314 -8.1904 39 1 -0.6693 -2.2330 -7.8328 40 1 0.3256 -4.8627 -6.5179 41 1 1.2696 -3.3407 -6.8233 42 1 -0.6853 -5.2717 -2.2389 43 1 0.6655 -6.2724 -1.6500 44 1 -0.6385 -3.9247 -0.1944 45 1 -0.7485 -5.6443 0.2527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998248105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:40 Heat of formation + Delta-G solvation = -156.952906 kcal Electronic energy + Delta-G solvation = -31379.104483 eV Core-core repulsion = 26789.413931 eV Total energy + Delta-G solvation = -4589.690552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 5.99 seconds Orbital eigenvalues (eV) -49.54433 -47.12517 -46.85358 -40.03872 -38.62134 -37.14767 -34.21911 -32.71999 -31.35208 -30.28078 -28.68895 -26.72315 -25.53811 -24.20847 -23.38610 -23.15233 -22.22213 -20.02794 -19.28708 -18.67250 -17.82861 -17.70301 -17.36474 -17.02273 -16.28298 -15.84115 -15.33969 -15.06924 -14.58374 -14.44998 -14.21421 -13.98089 -13.69102 -13.58459 -13.48707 -13.29926 -13.14334 -13.04459 -13.01594 -12.86559 -12.44602 -12.41942 -12.31043 -12.20725 -11.70345 -11.55957 -11.30981 -11.05288 -10.84614 -10.83131 -10.67209 -10.51476 -10.35834 -10.22237 -10.08937 -9.99722 -9.65658 -9.24220 -8.99405 -8.21167 -6.93884 -5.72982 -3.02067 3.12886 3.24982 3.44517 3.48915 3.54029 3.54370 4.25167 4.34442 4.54035 4.60044 4.64780 4.70062 4.76590 4.89647 4.94358 5.06109 5.20372 5.27875 5.38530 5.40964 5.42162 5.47216 5.55713 5.61736 5.71201 5.73202 5.73316 5.82458 5.88578 5.92282 6.01445 6.02269 6.07847 6.14531 6.28531 6.35144 6.47228 6.60030 6.63856 6.99108 7.73297 7.85810 8.42946 8.72440 9.56686 10.06214 10.41540 11.49172 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.005043 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.731219 B = 5551.016747 C = 7458.443953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.004 4.004 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.708 5.708 10 C 0.164 3.836 11 H 0.071 0.929 12 C 0.096 3.904 13 N -0.603 5.603 14 C 0.520 3.480 15 O -0.530 6.530 16 C -0.129 4.129 17 C -0.093 4.093 18 C -0.139 4.139 19 C -0.142 4.142 20 C -0.134 4.134 21 C 0.117 3.883 22 C -0.135 4.135 23 C -0.138 4.138 24 H 0.107 0.893 25 C 0.455 3.545 26 F -0.199 7.199 27 F -0.188 7.188 28 F -0.154 7.154 29 H 0.254 0.746 30 H 0.388 0.612 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.879 -15.369 -6.129 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.736 3.264 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.351 5.351 10 C 0.052 3.948 11 H 0.089 0.911 12 C -0.030 4.030 13 N -0.337 5.337 14 C 0.308 3.692 15 O -0.406 6.406 16 C -0.169 4.169 17 C -0.111 4.111 18 C -0.176 4.176 19 C -0.180 4.180 20 C -0.171 4.171 21 C -0.006 4.006 22 C -0.174 4.174 23 C -0.159 4.159 24 H 0.125 0.875 25 C 0.401 3.599 26 F -0.181 7.181 27 F -0.169 7.169 28 F -0.135 7.135 29 H 0.064 0.936 30 H 0.225 0.775 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.351 -14.744 -6.314 16.211 hybrid contribution 0.030 0.915 0.458 1.024 sum -2.321 -13.829 -5.856 15.196 Atomic orbital electron populations 1.69652 1.05062 1.25526 1.57258 1.24659 0.95423 0.97512 1.02444 0.86235 0.78702 0.84022 0.77473 1.21733 1.21900 1.20778 1.19113 0.90864 0.83809 1.43158 0.91259 1.42435 1.05877 0.98871 1.87926 1.20661 0.94498 0.86081 0.93583 0.91146 1.22508 0.85513 1.00579 0.94392 1.47873 1.21023 1.42425 1.22352 1.20460 0.88055 0.80079 0.80616 1.90680 1.48843 1.33616 1.67442 1.21689 0.96843 1.01006 0.97368 1.22360 0.96112 1.00794 0.91860 1.22973 0.96449 1.01942 0.96236 1.22787 0.97469 1.01309 0.96407 1.22958 0.98199 0.99759 0.96199 1.21557 0.93371 0.91927 0.93785 1.21958 0.95833 1.04273 0.95290 1.22747 1.00673 1.02958 0.89494 0.87522 1.20478 0.74382 0.75198 0.89819 1.93113 1.75131 1.61986 1.87873 1.93136 1.47860 1.95974 1.79959 1.93318 1.79409 1.44110 1.96710 0.93646 0.77521 0.93114 0.88189 0.88892 0.89624 0.88018 0.91454 0.90319 0.91863 0.90330 0.90684 0.91364 0.89529 0.91528 0.89127 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 3 Si 0.90 23.07 29.55 -169.99 -5.02 18.05 16 4 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.71 -16.75 3.69 -53.09 -0.20 -16.94 16 10 C 0.16 3.00 2.45 -67.58 -0.17 2.83 16 11 H 0.07 1.32 7.70 -51.93 -0.40 0.92 16 12 C 0.10 1.63 6.08 -3.49 -0.02 1.61 16 13 N -0.60 -9.45 2.88 -172.50 -0.50 -9.95 16 14 C 0.52 9.08 7.70 -10.99 -0.08 8.99 16 15 O -0.53 -11.63 15.17 5.56 0.08 -11.55 16 16 C -0.13 -1.69 3.88 -27.88 -0.11 -1.80 16 17 C -0.09 -1.25 3.15 -89.71 -0.28 -1.53 16 18 C -0.14 -1.49 7.65 -25.92 -0.20 -1.68 16 19 C -0.14 -1.47 8.08 -25.92 -0.21 -1.68 16 20 C -0.13 -1.59 7.65 -25.82 -0.20 -1.79 16 21 C 0.12 1.35 6.34 -3.71 -0.02 1.33 16 22 C -0.14 -1.78 4.95 -26.61 -0.13 -1.91 16 23 C -0.14 -2.02 2.01 -90.57 -0.18 -2.20 16 24 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 25 C 0.46 7.69 2.69 37.16 0.10 7.79 16 26 F -0.20 -3.04 16.77 2.25 0.04 -3.01 16 27 F -0.19 -3.32 16.77 2.25 0.04 -3.28 16 28 F -0.15 -3.25 14.40 2.25 0.03 -3.21 16 29 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.39 9.78 4.95 -40.82 -0.20 9.58 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.08 7.00 -51.93 -0.36 1.71 16 33 H 0.09 1.18 7.69 -51.93 -0.40 0.78 16 34 H 0.09 0.87 7.65 -51.93 -0.40 0.47 16 35 H 0.10 1.70 7.68 -51.93 -0.40 1.30 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.79 7.90 -51.93 -0.41 0.38 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 0.83 5.93 -51.92 -0.31 0.52 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.50 6.11 -51.93 -0.32 1.19 16 45 H 0.08 0.86 7.77 -51.93 -0.40 0.46 16 LS Contribution 363.30 15.07 5.47 5.47 Total: -1.00 -32.95 363.30 -7.60 -40.55 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.53 Total: 7.99 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.75 Total: 3.05 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.03 Total: -54.07 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 0.11 Total: -9.50 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.95 -7.60 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998248105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.402 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.00 seconds