Wall clock time and date at job start Tue Mar 31 2020 21:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86792 * 120.00323 * 2 1 4 4 H 1.48498 * 109.47358 * 269.99832 * 3 2 1 5 5 H 1.48502 * 109.47239 * 29.99855 * 3 2 1 6 6 H 1.48509 * 109.47357 * 149.99749 * 3 2 1 7 7 C 1.38818 * 119.99311 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99122 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00559 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00053 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.49979 * 34.93310 * 10 9 7 12 12 C 1.53623 * 109.66166 * 274.84455 * 10 9 7 13 13 N 1.46924 * 108.54458 * 294.85513 * 12 10 9 14 14 C 1.34774 * 120.63127 * 126.36834 * 13 12 10 15 15 O 1.21282 * 120.00285 * 359.71394 * 14 13 12 16 16 C 1.50702 * 119.99999 * 179.71659 * 14 13 12 17 17 C 1.52994 * 109.47353 * 179.97438 * 16 14 13 18 18 C 1.53782 * 113.61734 * 184.99947 * 17 16 14 19 19 C 1.53781 * 87.08260 * 220.02231 * 18 17 16 20 20 C 1.53786 * 87.17350 * 25.39213 * 19 18 17 21 21 C 1.46927 * 118.73485 * 306.08732 * 13 12 10 22 22 C 1.53194 * 108.77612 * 53.86454 * 21 13 12 23 23 C 1.53036 * 109.30995 * 305.36371 * 22 21 13 24 24 H 1.08998 * 109.45957 * 301.35448 * 23 22 21 25 25 C 1.53006 * 109.45895 * 181.38416 * 23 22 21 26 26 F 1.39896 * 109.46923 * 59.99970 * 25 23 22 27 27 F 1.39899 * 109.47162 * 179.97438 * 25 23 22 28 28 F 1.39904 * 109.47130 * 300.00182 * 25 23 22 29 29 H 0.97007 * 120.00044 * 0.02562 * 1 2 3 30 30 H 0.97008 * 119.99779 * 359.97438 * 9 7 2 31 31 H 1.08991 * 109.74120 * 175.11183 * 12 10 9 32 32 H 1.09003 * 109.65807 * 54.54395 * 12 10 9 33 33 H 1.09005 * 109.46716 * 60.00085 * 16 14 13 34 34 H 1.08998 * 109.47049 * 300.00101 * 16 14 13 35 35 H 1.08997 * 112.90864 * 316.25792 * 17 16 14 36 36 H 1.09001 * 113.61250 * 105.47049 * 18 17 16 37 37 H 1.08997 * 113.61225 * 334.56890 * 18 17 16 38 38 H 1.09002 * 113.61445 * 139.98212 * 19 18 17 39 39 H 1.09002 * 113.61408 * 270.79943 * 19 18 17 40 40 H 1.08993 * 113.61491 * 89.15923 * 20 19 18 41 41 H 1.09000 * 113.61138 * 220.06261 * 20 19 18 42 42 H 1.09008 * 109.58479 * 173.64925 * 21 13 12 43 43 H 1.08998 * 109.58797 * 293.93153 * 21 13 12 44 44 H 1.08998 * 109.49619 * 65.31279 * 22 21 13 45 45 H 1.08994 * 109.49983 * 185.37760 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2023 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9692 -3.5508 0.5889 12 6 2.4221 -4.0434 -1.4410 13 7 1.1809 -4.3048 -2.1825 14 6 0.9283 -3.6699 -3.3441 15 8 1.7268 -2.8701 -3.7842 16 6 -0.3464 -3.9536 -4.0962 17 6 -0.3859 -3.1077 -5.3704 18 6 -1.7047 -3.2317 -6.1516 19 6 -0.8545 -3.2300 -7.4330 20 6 0.3007 -3.7746 -6.5764 21 6 0.2233 -5.2763 -1.6366 22 6 -0.1138 -4.8801 -0.1957 23 6 1.1809 -4.7529 0.6103 24 1 1.7173 -5.7015 0.5877 25 6 0.8462 -4.3910 2.0587 26 9 0.0458 -5.3936 2.6168 27 9 2.0295 -4.2753 2.7959 28 9 0.1570 -3.1738 2.0880 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3881 0.0005 31 1 3.0409 -4.9406 -1.4363 32 1 2.9649 -3.2250 -1.9141 33 1 -1.2019 -3.7043 -3.4683 34 1 -0.3851 -5.0105 -4.3599 35 1 -0.0713 -2.0773 -5.2055 36 1 -2.3524 -2.3602 -6.0561 37 1 -2.2290 -4.1712 -5.9768 38 1 -1.2048 -3.9314 -8.1904 39 1 -0.6693 -2.2330 -7.8328 40 1 0.3256 -4.8627 -6.5179 41 1 1.2696 -3.3407 -6.8233 42 1 -0.6853 -5.2717 -2.2389 43 1 0.6655 -6.2724 -1.6500 44 1 -0.6385 -3.9247 -0.1944 45 1 -0.7485 -5.6443 0.2527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998248105.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:33 Heat of formation + Delta-G solvation = -177.149532 kcal Electronic energy + Delta-G solvation = -31379.980274 eV Core-core repulsion = 26789.413931 eV Total energy + Delta-G solvation = -4590.566344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 6.43 seconds Orbital eigenvalues (eV) -50.91493 -48.44684 -48.32723 -41.27856 -39.68678 -38.46873 -35.88160 -34.27963 -32.85715 -31.56368 -30.20687 -28.03042 -26.42592 -25.99398 -24.69080 -24.32119 -23.51469 -21.33421 -20.28121 -20.02054 -19.28054 -19.07381 -19.01481 -18.46805 -17.53852 -17.12713 -16.57123 -16.45970 -16.10200 -15.85537 -15.53983 -15.28300 -15.14977 -15.01489 -14.81961 -14.63860 -14.52840 -14.44797 -14.41183 -14.14719 -13.82881 -13.58239 -13.49937 -13.24904 -13.06624 -12.89328 -12.78312 -12.71016 -12.32680 -12.25228 -12.10057 -11.95917 -11.69683 -11.56150 -11.42067 -11.17671 -11.06343 -11.01712 -10.54390 -9.59904 -8.87472 -7.93045 -5.17815 1.40203 1.43212 1.48899 1.82620 1.96062 2.25561 2.53741 2.97067 3.10037 3.25585 3.41143 3.59093 3.78240 3.78940 3.84947 3.92495 3.97069 4.01491 4.11883 4.12618 4.29952 4.39510 4.51881 4.57860 4.65721 4.70695 4.72132 4.81040 4.83283 4.87515 4.90345 4.94394 5.04886 5.11488 5.14141 5.21092 5.28456 5.44237 5.49964 5.67198 5.74464 6.28140 6.62912 7.37744 7.43924 8.10321 8.33461 9.29719 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.009820 B = 0.005043 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.731219 B = 5551.016747 C = 7458.443953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.067 4.067 3 Si 0.956 3.044 4 H -0.299 1.299 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.228 4.228 8 H 0.067 0.933 9 N -0.717 5.717 10 C 0.156 3.844 11 H 0.063 0.937 12 C 0.103 3.897 13 N -0.604 5.604 14 C 0.505 3.495 15 O -0.591 6.591 16 C -0.119 4.119 17 C -0.109 4.109 18 C -0.126 4.126 19 C -0.137 4.137 20 C -0.131 4.131 21 C 0.114 3.886 22 C -0.132 4.132 23 C -0.126 4.126 24 H 0.155 0.845 25 C 0.451 3.549 26 F -0.186 7.186 27 F -0.195 7.195 28 F -0.185 7.185 29 H 0.246 0.754 30 H 0.380 0.620 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.042 0.958 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.050 0.950 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.630 -19.351 -6.649 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.260 4.260 3 Si 0.787 3.213 4 H -0.227 1.227 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.360 4.360 8 H 0.085 0.915 9 N -0.359 5.359 10 C 0.046 3.954 11 H 0.081 0.919 12 C -0.023 4.023 13 N -0.336 5.336 14 C 0.295 3.705 15 O -0.472 6.472 16 C -0.158 4.158 17 C -0.128 4.128 18 C -0.163 4.163 19 C -0.174 4.174 20 C -0.169 4.169 21 C -0.008 4.008 22 C -0.170 4.170 23 C -0.146 4.146 24 H 0.173 0.827 25 C 0.397 3.603 26 F -0.168 7.168 27 F -0.177 7.177 28 F -0.167 7.167 29 H 0.055 0.945 30 H 0.215 0.785 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.148 0.852 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.061 0.939 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.069 0.931 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.085 -18.797 -6.805 20.227 hybrid contribution 0.341 2.056 0.687 2.195 sum -2.744 -16.740 -6.117 18.033 Atomic orbital electron populations 1.69781 1.06109 1.25366 1.59785 1.25305 0.96220 1.00281 1.04201 0.85386 0.78119 0.80991 0.76789 1.22692 1.22099 1.19517 1.19421 0.90965 0.85466 1.40192 0.91533 1.42506 1.05626 0.99829 1.87930 1.20880 0.94581 0.85277 0.94668 0.91907 1.22231 0.86636 1.00846 0.92591 1.48049 1.21204 1.42659 1.21664 1.21361 0.88822 0.79164 0.81184 1.90655 1.51032 1.36283 1.69209 1.21730 0.94285 1.03333 0.96445 1.22334 0.98700 0.98539 0.93246 1.22968 0.95035 1.03138 0.95170 1.22763 0.96474 1.01364 0.96798 1.22986 0.97358 1.00858 0.95673 1.21973 0.93874 0.92433 0.92503 1.21988 0.95017 1.03438 0.96576 1.22779 1.01297 1.03066 0.87474 0.82734 1.20866 0.73998 0.74372 0.91097 1.93132 1.74768 1.61029 1.87842 1.93122 1.48204 1.95986 1.80351 1.93263 1.80141 1.46367 1.96903 0.94482 0.78485 0.88743 0.92914 0.88277 0.85248 0.92992 0.92063 0.87405 0.89366 0.91351 0.88282 0.93902 0.87001 0.87013 0.93146 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.13 13.06 21.65 0.28 -59.85 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 3 Si 0.96 49.22 29.55 68.60 2.03 51.25 16 4 H -0.30 -15.64 7.11 99.48 0.71 -14.94 16 5 H -0.29 -15.09 7.11 99.48 0.71 -14.39 16 6 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 7 C -0.23 -12.93 9.93 84.04 0.83 -12.10 16 8 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 9 N -0.72 -34.66 3.69 -321.89 -1.19 -35.84 16 10 C 0.16 5.57 2.45 45.22 0.11 5.68 16 11 H 0.06 2.33 7.70 -2.39 -0.02 2.31 16 12 C 0.10 3.38 6.08 86.51 0.53 3.91 16 13 N -0.60 -17.70 2.88 -818.06 -2.36 -20.06 16 14 C 0.50 17.49 7.70 87.66 0.67 18.16 16 15 O -0.59 -27.33 15.17 -3.03 -0.05 -27.38 16 16 C -0.12 -2.87 3.88 29.85 0.12 -2.76 16 17 C -0.11 -2.93 3.15 -10.21 -0.03 -2.96 16 18 C -0.13 -2.44 7.65 31.12 0.24 -2.21 16 19 C -0.14 -2.60 8.08 31.12 0.25 -2.35 16 20 C -0.13 -2.99 7.65 31.18 0.24 -2.75 16 21 C 0.11 2.07 6.34 86.36 0.55 2.62 16 22 C -0.13 -3.01 4.95 30.67 0.15 -2.86 16 23 C -0.13 -3.31 2.01 -10.76 -0.02 -3.33 16 24 H 0.16 2.65 8.14 -2.39 -0.02 2.63 16 25 C 0.45 14.44 2.69 71.98 0.19 14.63 16 26 F -0.19 -5.15 16.77 44.97 0.75 -4.39 16 27 F -0.20 -6.64 16.77 44.97 0.75 -5.88 16 28 F -0.19 -7.86 14.40 44.97 0.65 -7.22 16 29 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 30 H 0.38 19.71 4.95 -92.70 -0.46 19.25 16 31 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.05 2.26 7.00 -2.39 -0.02 2.24 16 33 H 0.10 2.29 7.69 -2.38 -0.02 2.27 16 34 H 0.13 1.98 7.65 -2.39 -0.02 1.97 16 35 H 0.05 1.90 7.68 -2.39 -0.02 1.88 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.11 1.50 8.10 -2.39 -0.02 1.48 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.10 1.77 7.90 -2.39 -0.02 1.75 16 41 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.11 1.53 5.93 -2.38 -0.01 1.52 16 43 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 44 H 0.05 1.61 6.11 -2.39 -0.01 1.59 16 45 H 0.12 1.89 7.77 -2.39 -0.02 1.87 16 Total: -1.00 -79.43 363.30 5.73 -73.70 By element: Atomic # 1 Polarization: 24.98 SS G_CDS: 0.56 Total: 25.54 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 4.30 Total: 10.13 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -3.26 Total: -115.75 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.05 Total: -27.38 kcal Atomic # 9 Polarization: -19.65 SS G_CDS: 2.16 Total: -17.49 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.03 Total: 51.25 kcal Total: -79.43 5.73 -73.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998248105.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.447 kcal (2) G-P(sol) polarization free energy of solvation -79.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.43 seconds