Wall clock time and date at job start Tue Mar 31 2020 20:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00555 * 2 1 4 4 H 1.48496 * 109.47204 * 240.00170 * 3 2 1 5 5 H 1.48498 * 109.46829 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47184 * 119.99881 * 3 2 1 7 7 C 1.38814 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00226 * 168.89469 * 7 2 1 9 9 N 1.36944 * 119.99682 * 348.62066 * 7 2 1 10 10 C 1.46922 * 120.62906 * 328.90349 * 9 7 2 11 11 C 1.53190 * 108.77711 * 233.58794 * 10 9 7 12 12 C 1.53039 * 109.31166 * 305.36471 * 11 10 9 13 13 C 1.53045 * 109.53656 * 61.36866 * 12 11 10 14 14 C 1.46931 * 120.62840 * 148.63218 * 9 7 2 15 15 H 1.08995 * 109.57913 * 246.19912 * 14 9 7 16 16 C 1.52994 * 109.58866 * 6.62078 * 14 9 7 17 17 N 1.46496 * 109.47406 * 300.09033 * 16 14 9 18 18 C 1.34778 * 120.00257 * 180.02562 * 17 16 14 19 19 O 1.21694 * 120.00029 * 359.97438 * 18 17 16 20 20 C 1.46661 * 120.00009 * 179.97438 * 18 17 16 21 21 O 1.35392 * 126.12225 * 359.69139 * 20 18 17 22 22 C 1.34392 * 109.47810 * 179.84373 * 21 20 18 23 23 C 1.33898 * 108.56105 * 0.37181 * 22 21 20 24 24 C 1.35185 * 126.11756 * 180.02562 * 20 18 17 25 25 C 1.50725 * 130.57609 * 0.16027 * 24 20 18 26 26 C 1.53684 * 107.44021 * 164.17201 * 25 24 20 27 27 O 1.42901 * 109.97658 * 48.25111 * 26 25 24 28 28 C 1.43512 * 114.76711 * 287.63261 * 27 26 25 29 29 H 0.97000 * 119.99589 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.58827 * 353.37850 * 10 9 7 31 31 H 1.09002 * 109.58109 * 113.66117 * 10 9 7 32 32 H 1.08996 * 109.49693 * 65.32042 * 11 10 9 33 33 H 1.09006 * 109.49518 * 185.38629 * 11 10 9 34 34 H 1.09006 * 109.46120 * 181.38169 * 12 11 10 35 35 H 1.08994 * 109.46808 * 301.35860 * 12 11 10 36 36 H 1.09007 * 109.49881 * 58.58424 * 13 12 11 37 37 H 1.09001 * 109.49733 * 178.64512 * 13 12 11 38 38 H 1.09004 * 109.46938 * 60.09047 * 16 14 9 39 39 H 1.08996 * 109.47049 * 180.08463 * 16 14 9 40 40 H 0.97003 * 119.99780 * 359.97438 * 17 16 14 41 41 H 1.08006 * 125.71731 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.86495 * 283.65458 * 25 24 20 43 43 H 1.09002 * 109.86397 * 44.69339 * 25 24 20 44 44 H 1.08997 * 109.38248 * 168.40375 * 26 25 24 45 45 H 1.08995 * 109.38463 * 288.19952 * 26 25 24 46 46 H 1.09001 * 109.82598 * 171.04604 * 28 27 26 47 47 H 1.09003 * 109.82737 * 291.97080 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0750 -1.2111 -0.1796 9 7 1.3456 -2.3763 0.2351 10 6 0.1656 -2.4067 1.1099 11 6 0.3811 -3.4696 2.1918 12 6 0.7056 -4.8095 1.5274 13 6 1.9960 -4.6787 0.7150 14 6 1.7955 -3.6286 -0.3881 15 1 1.0420 -3.9762 -1.0948 16 6 3.1181 -3.3911 -1.1196 17 7 2.9279 -2.3713 -2.1540 18 6 3.9641 -1.9978 -2.9307 19 8 5.0579 -2.5073 -2.7724 20 6 3.7735 -0.9772 -3.9666 21 8 2.6155 -0.3367 -4.2525 22 6 2.8201 0.5318 -5.2574 23 6 4.1030 0.4546 -5.6330 24 6 4.7213 -0.5123 -4.8110 25 6 6.1776 -0.8763 -4.9464 26 6 6.6618 -0.3417 -6.3036 27 8 6.2551 1.0186 -6.4657 28 6 4.8523 1.2022 -6.7063 29 1 -0.4849 0.8401 -0.0004 30 1 0.0321 -1.4312 1.5774 31 1 -0.7185 -2.6544 0.5223 32 1 1.2097 -3.1719 2.8343 33 1 -0.5251 -3.5694 2.7894 34 1 0.8353 -5.5732 2.2943 35 1 -0.1124 -5.0945 0.8659 36 1 2.8095 -4.3697 1.3714 37 1 2.2395 -5.6396 0.2616 38 1 3.8708 -3.0512 -0.4082 39 1 3.4493 -4.3208 -1.5824 40 1 2.0560 -1.9655 -2.2804 41 1 2.0733 1.1792 -5.6932 42 1 6.7507 -0.4163 -4.1415 43 1 6.2934 -1.9596 -4.9126 44 1 7.7491 -0.4022 -6.3491 45 1 6.2320 -0.9441 -7.1038 46 1 4.6048 2.2627 -6.6593 47 1 4.5900 0.8037 -7.6864 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024580691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:36 Heat of formation + Delta-G solvation = -45.911415 kcal Electronic energy + Delta-G solvation = -30239.869865 eV Core-core repulsion = 26196.851173 eV Total energy + Delta-G solvation = -4043.018691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.63976 -39.11573 -38.55572 -37.66822 -34.37776 -33.40262 -33.07244 -32.03261 -30.90388 -29.92240 -29.07829 -26.27993 -26.08327 -24.94092 -23.49646 -22.43264 -22.09277 -20.69211 -19.67966 -19.59000 -19.10386 -17.84608 -16.57772 -16.41879 -16.08152 -15.89051 -15.53363 -15.29730 -15.17722 -14.85294 -14.25434 -14.04893 -13.72024 -13.63255 -13.42358 -13.36881 -13.05635 -12.82970 -12.64185 -12.44162 -12.12207 -12.03607 -11.79100 -11.55190 -11.23960 -10.96238 -10.93374 -10.78234 -10.58017 -10.32539 -10.16138 -10.04366 -10.00394 -9.71085 -9.51156 -9.37269 -9.33549 -8.69049 -8.50634 -8.20055 -6.66944 -5.85423 -3.33223 1.34639 2.33546 2.95857 3.34604 3.38629 3.43403 3.57148 3.67139 3.82019 4.42503 4.49930 4.73524 4.92574 5.02465 5.15231 5.21300 5.24012 5.29268 5.30908 5.46998 5.48582 5.62374 5.65484 5.67580 5.82724 5.91922 5.94535 6.01284 6.08577 6.10675 6.12032 6.26278 6.34426 6.38288 6.43341 6.57354 6.69544 6.72243 6.83800 6.91399 6.94924 7.02991 7.12049 7.38266 7.66587 7.76472 8.13568 8.39570 8.65320 9.15071 9.75856 10.33631 11.20944 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.003977 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.774108 B = 7037.935740 C = 8186.830964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.013 3.987 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.144 4.144 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.033 0.967 16 C 0.133 3.867 17 N -0.678 5.678 18 C 0.591 3.409 19 O -0.542 6.542 20 C -0.045 4.045 21 O -0.155 6.155 22 C 0.011 3.989 23 C -0.245 4.245 24 C -0.101 4.101 25 C -0.082 4.082 26 C 0.064 3.936 27 O -0.381 6.381 28 C 0.139 3.861 29 H 0.255 0.745 30 H 0.088 0.912 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.421 0.579 41 H 0.208 0.792 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.052 0.948 46 H 0.104 0.896 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.848 -3.059 -10.205 11.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.187 4.187 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.383 4.383 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.166 4.166 14 C 0.052 3.948 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.327 5.327 18 C 0.377 3.623 19 O -0.424 6.424 20 C -0.097 4.097 21 O -0.050 6.050 22 C -0.059 4.059 23 C -0.246 4.246 24 C -0.104 4.104 25 C -0.119 4.119 26 C -0.013 4.013 27 O -0.299 6.299 28 C 0.062 3.938 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.259 0.741 41 H 0.224 0.776 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.070 0.930 46 H 0.122 0.878 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.325 -3.192 -9.899 11.685 hybrid contribution -0.315 1.102 0.031 1.146 sum 5.010 -2.090 -9.868 11.263 Atomic orbital electron populations 1.69966 1.05109 1.25593 1.53589 1.25057 0.95220 0.98040 1.00384 0.86521 0.79091 0.83774 0.78436 1.20722 1.21538 1.20980 1.19126 0.91282 0.83715 1.44180 0.91443 1.44082 1.32781 1.02664 1.51786 1.20791 0.87872 0.97372 0.89245 1.22199 0.99812 0.96682 0.99658 1.21363 0.97352 0.97416 0.98374 1.22010 0.98063 0.98082 0.98482 1.20826 0.92816 0.88760 0.92349 0.94958 1.21373 0.98654 0.89643 0.89365 1.45987 1.13336 1.40337 1.33058 1.16523 0.85004 0.80661 0.80155 1.90794 1.24906 1.56025 1.70631 1.21624 0.84506 1.01322 1.02225 1.84428 1.33629 1.43230 1.43712 1.23569 0.97295 0.94915 0.90141 1.20921 0.95250 1.04020 1.04438 1.20080 0.96931 0.97353 0.96055 1.20812 0.90040 1.02549 0.98528 1.22692 1.00114 0.82718 0.95762 1.87959 1.23069 1.26365 1.92552 1.20980 0.79739 0.99475 0.93563 0.93530 0.89421 0.96425 0.92848 0.93547 0.93712 0.92889 0.92027 0.93036 0.91202 0.92241 0.74065 0.77553 0.89414 0.88619 0.88320 0.92960 0.87847 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.48 11.07 55.49 0.61 -23.87 16 2 C 0.01 0.33 5.03 -17.43 -0.09 0.24 16 3 Si 0.89 21.63 29.57 -169.99 -5.03 16.61 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.39 6.94 -15.06 -0.10 -6.49 16 8 H 0.07 1.76 5.87 -52.49 -0.31 1.45 16 9 N -0.59 -13.49 2.97 -164.53 -0.49 -13.98 16 10 C 0.17 3.89 5.25 -3.71 -0.02 3.87 16 11 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16 12 C -0.11 -1.75 5.88 -26.69 -0.16 -1.90 16 13 C -0.13 -2.10 5.40 -26.39 -0.14 -2.24 16 14 C 0.16 3.07 3.03 -67.38 -0.20 2.86 16 15 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 16 C 0.13 2.51 4.44 -4.05 -0.02 2.49 16 17 N -0.68 -13.53 3.83 -61.63 -0.24 -13.76 16 18 C 0.59 11.88 7.79 -12.86 -0.10 11.78 16 19 O -0.54 -11.48 15.63 5.19 0.08 -11.40 16 20 C -0.04 -0.84 7.11 -37.27 -0.27 -1.11 16 21 O -0.15 -2.78 10.44 2.36 0.02 -2.76 16 22 C 0.01 0.15 12.06 29.21 0.35 0.50 16 23 C -0.24 -3.49 6.04 -105.02 -0.63 -4.12 16 24 C -0.10 -1.69 6.02 -104.59 -0.63 -2.32 16 25 C -0.08 -1.18 5.71 -27.52 -0.16 -1.34 16 26 C 0.06 0.74 6.75 37.51 0.25 0.99 16 27 O -0.38 -5.00 10.70 -35.23 -0.38 -5.38 16 28 C 0.14 1.57 7.27 36.02 0.26 1.83 16 29 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.09 2.24 6.11 -51.93 -0.32 1.92 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.42 7.44 -51.93 -0.39 1.04 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.42 8.96 7.13 -40.82 -0.29 8.67 16 41 H 0.21 1.93 8.06 -52.48 -0.42 1.51 16 42 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.10 1.36 7.64 -51.93 -0.40 0.97 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.54 8.08 -51.93 -0.42 0.12 16 46 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -30.01 370.83 -8.81 -38.81 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.17 Total: 7.92 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -1.81 Total: 2.21 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.11 Total: -51.61 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.27 Total: -19.54 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.01 -8.81 -38.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024580691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.097 kcal (2) G-P(sol) polarization free energy of solvation -30.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds