Wall clock time and date at job start Tue Mar 31 2020 20:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00555 * 2 1 4 4 H 1.48496 * 109.47204 * 240.00170 * 3 2 1 5 5 H 1.48498 * 109.46829 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47184 * 119.99881 * 3 2 1 7 7 C 1.38814 * 119.99934 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00226 * 168.89469 * 7 2 1 9 9 N 1.36944 * 119.99682 * 348.62066 * 7 2 1 10 10 C 1.46922 * 120.62906 * 328.90349 * 9 7 2 11 11 C 1.53190 * 108.77711 * 233.58794 * 10 9 7 12 12 C 1.53039 * 109.31166 * 305.36471 * 11 10 9 13 13 C 1.53045 * 109.53656 * 61.36866 * 12 11 10 14 14 C 1.46931 * 120.62840 * 148.63218 * 9 7 2 15 15 H 1.08995 * 109.57913 * 246.19912 * 14 9 7 16 16 C 1.52994 * 109.58866 * 6.62078 * 14 9 7 17 17 N 1.46496 * 109.47406 * 300.09033 * 16 14 9 18 18 C 1.34778 * 120.00257 * 180.02562 * 17 16 14 19 19 O 1.21694 * 120.00029 * 359.97438 * 18 17 16 20 20 C 1.46661 * 120.00009 * 179.97438 * 18 17 16 21 21 O 1.35392 * 126.12225 * 359.69139 * 20 18 17 22 22 C 1.34392 * 109.47810 * 179.84373 * 21 20 18 23 23 C 1.33898 * 108.56105 * 0.37181 * 22 21 20 24 24 C 1.35185 * 126.11756 * 180.02562 * 20 18 17 25 25 C 1.50725 * 130.57609 * 0.16027 * 24 20 18 26 26 C 1.53684 * 107.44021 * 164.17201 * 25 24 20 27 27 O 1.42901 * 109.97658 * 48.25111 * 26 25 24 28 28 C 1.43512 * 114.76711 * 287.63261 * 27 26 25 29 29 H 0.97000 * 119.99589 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.58827 * 353.37850 * 10 9 7 31 31 H 1.09002 * 109.58109 * 113.66117 * 10 9 7 32 32 H 1.08996 * 109.49693 * 65.32042 * 11 10 9 33 33 H 1.09006 * 109.49518 * 185.38629 * 11 10 9 34 34 H 1.09006 * 109.46120 * 181.38169 * 12 11 10 35 35 H 1.08994 * 109.46808 * 301.35860 * 12 11 10 36 36 H 1.09007 * 109.49881 * 58.58424 * 13 12 11 37 37 H 1.09001 * 109.49733 * 178.64512 * 13 12 11 38 38 H 1.09004 * 109.46938 * 60.09047 * 16 14 9 39 39 H 1.08996 * 109.47049 * 180.08463 * 16 14 9 40 40 H 0.97003 * 119.99780 * 359.97438 * 17 16 14 41 41 H 1.08006 * 125.71731 * 180.02562 * 22 21 20 42 42 H 1.08996 * 109.86495 * 283.65458 * 25 24 20 43 43 H 1.09002 * 109.86397 * 44.69339 * 25 24 20 44 44 H 1.08997 * 109.38248 * 168.40375 * 26 25 24 45 45 H 1.08995 * 109.38463 * 288.19952 * 26 25 24 46 46 H 1.09001 * 109.82598 * 171.04604 * 28 27 26 47 47 H 1.09003 * 109.82737 * 291.97080 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0750 -1.2111 -0.1796 9 7 1.3456 -2.3763 0.2351 10 6 0.1656 -2.4067 1.1099 11 6 0.3811 -3.4696 2.1918 12 6 0.7056 -4.8095 1.5274 13 6 1.9960 -4.6787 0.7150 14 6 1.7955 -3.6286 -0.3881 15 1 1.0420 -3.9762 -1.0948 16 6 3.1181 -3.3911 -1.1196 17 7 2.9279 -2.3713 -2.1540 18 6 3.9641 -1.9978 -2.9307 19 8 5.0579 -2.5073 -2.7724 20 6 3.7735 -0.9772 -3.9666 21 8 2.6155 -0.3367 -4.2525 22 6 2.8201 0.5318 -5.2574 23 6 4.1030 0.4546 -5.6330 24 6 4.7213 -0.5123 -4.8110 25 6 6.1776 -0.8763 -4.9464 26 6 6.6618 -0.3417 -6.3036 27 8 6.2551 1.0186 -6.4657 28 6 4.8523 1.2022 -6.7063 29 1 -0.4849 0.8401 -0.0004 30 1 0.0321 -1.4312 1.5774 31 1 -0.7185 -2.6544 0.5223 32 1 1.2097 -3.1719 2.8343 33 1 -0.5251 -3.5694 2.7894 34 1 0.8353 -5.5732 2.2943 35 1 -0.1124 -5.0945 0.8659 36 1 2.8095 -4.3697 1.3714 37 1 2.2395 -5.6396 0.2616 38 1 3.8708 -3.0512 -0.4082 39 1 3.4493 -4.3208 -1.5824 40 1 2.0560 -1.9655 -2.2804 41 1 2.0733 1.1792 -5.6932 42 1 6.7507 -0.4163 -4.1415 43 1 6.2934 -1.9596 -4.9126 44 1 7.7491 -0.4022 -6.3491 45 1 6.2320 -0.9441 -7.1038 46 1 4.6048 2.2627 -6.6593 47 1 4.5900 0.8037 -7.6864 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024580691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:32 Heat of formation + Delta-G solvation = -64.699861 kcal Electronic energy + Delta-G solvation = -30240.684593 eV Core-core repulsion = 26196.851173 eV Total energy + Delta-G solvation = -4043.833420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -43.86899 -40.68227 -39.54837 -39.27232 -35.89016 -34.93327 -34.59085 -33.12816 -32.44414 -31.69572 -30.33051 -27.77027 -27.20308 -26.62588 -24.64323 -23.90489 -23.60976 -22.24704 -21.12270 -20.75646 -20.63795 -19.23209 -18.23022 -17.69269 -17.33144 -17.22861 -17.10493 -16.70689 -16.21581 -16.07246 -15.90464 -15.69678 -15.25980 -15.10420 -14.84024 -14.60915 -14.46588 -14.22083 -14.07318 -13.67766 -13.62252 -13.47229 -13.21400 -12.89592 -12.84792 -12.59108 -12.58102 -12.37597 -12.07320 -11.91587 -11.82603 -11.53994 -11.45108 -11.11901 -11.04000 -10.79918 -10.56166 -10.49434 -10.06623 -9.59058 -8.57148 -7.85998 -5.33510 0.01388 1.19583 1.36182 1.38804 1.43903 1.71064 2.09019 2.34077 2.45531 2.82110 3.29501 3.41032 3.55315 3.64609 3.82261 3.93446 3.96503 4.20174 4.21720 4.25272 4.29313 4.36170 4.40966 4.48722 4.53394 4.62310 4.69467 4.70092 4.80372 4.82796 4.85472 4.96561 4.99003 5.03424 5.12997 5.21882 5.27792 5.28589 5.34204 5.45946 5.49009 5.63029 5.71903 5.79447 5.85025 6.13165 6.42104 6.54515 7.06926 7.17710 7.86171 8.38627 9.17771 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.003977 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.774108 B = 7037.935740 C = 8186.830964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.028 4.028 3 Si 0.935 3.065 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.236 4.236 8 H 0.057 0.943 9 N -0.602 5.602 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.103 4.103 13 C -0.120 4.120 14 C 0.158 3.842 15 H 0.033 0.967 16 C 0.137 3.863 17 N -0.683 5.683 18 C 0.589 3.411 19 O -0.563 6.563 20 C -0.091 4.091 21 O -0.180 6.180 22 C 0.019 3.981 23 C -0.251 4.251 24 C -0.102 4.102 25 C -0.085 4.085 26 C 0.069 3.931 27 O -0.397 6.397 28 C 0.138 3.862 29 H 0.249 0.751 30 H 0.052 0.948 31 H 0.000 1.000 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.413 0.587 41 H 0.252 0.748 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.122 0.878 45 H 0.068 0.932 46 H 0.125 0.875 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.334 -3.720 -11.545 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.225 4.225 3 Si 0.766 3.234 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.367 4.367 8 H 0.075 0.925 9 N -0.327 5.327 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.140 4.140 13 C -0.160 4.160 14 C 0.052 3.948 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.331 5.331 18 C 0.376 3.624 19 O -0.446 6.446 20 C -0.142 4.142 21 O -0.076 6.076 22 C -0.050 4.050 23 C -0.252 4.252 24 C -0.106 4.106 25 C -0.123 4.123 26 C -0.008 4.008 27 O -0.316 6.316 28 C 0.062 3.938 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.018 0.982 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.250 0.750 41 H 0.268 0.732 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.140 0.860 45 H 0.087 0.913 46 H 0.143 0.857 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.826 -3.878 -11.232 13.234 hybrid contribution -0.448 1.304 0.384 1.432 sum 5.378 -2.573 -10.848 12.379 Atomic orbital electron populations 1.70070 1.05769 1.25360 1.55583 1.25448 0.95671 0.99777 1.01615 0.85849 0.77972 0.82055 0.77569 1.21662 1.21454 1.21421 1.19107 0.90810 0.84705 1.42031 0.92536 1.44271 1.32632 1.03302 1.52494 1.20611 0.87234 0.97063 0.89924 1.22053 1.00428 0.96657 0.98304 1.21350 0.97111 0.96528 0.99032 1.21960 0.98191 0.98406 0.97433 1.21004 0.92637 0.87873 0.93243 0.94927 1.21392 0.97982 0.90266 0.88970 1.46013 1.12946 1.40677 1.33424 1.16753 0.84612 0.80760 0.80308 1.90755 1.25336 1.56988 1.71478 1.21470 0.85774 1.03145 1.03783 1.84394 1.33715 1.44282 1.45240 1.24556 0.98534 0.93604 0.88326 1.21361 0.95371 1.03608 1.04889 1.20579 0.97643 0.97002 0.95342 1.20908 0.88804 1.02404 1.00152 1.22774 1.01570 0.82320 0.94107 1.87944 1.24062 1.27034 1.92521 1.21303 0.78469 1.00501 0.93550 0.94170 0.92941 0.98155 0.93649 0.91723 0.90613 0.92422 0.92678 0.89756 0.93086 0.89990 0.75018 0.73179 0.90766 0.89007 0.86011 0.91338 0.85732 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.77 11.07 21.65 0.24 -51.53 16 2 C -0.03 -1.53 5.03 84.86 0.43 -1.11 16 3 Si 0.94 45.69 29.57 68.60 2.03 47.72 16 4 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 5 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 6 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 7 C -0.24 -12.20 6.94 84.03 0.58 -11.62 16 8 H 0.06 3.05 5.87 -2.91 -0.02 3.03 16 9 N -0.60 -27.96 2.97 -674.44 -2.00 -29.97 16 10 C 0.18 8.10 5.25 86.36 0.45 8.55 16 11 C -0.14 -4.84 6.08 30.67 0.19 -4.65 16 12 C -0.10 -3.04 5.88 30.62 0.18 -2.86 16 13 C -0.12 -3.72 5.40 30.82 0.17 -3.55 16 14 C 0.16 6.01 3.03 45.12 0.14 6.14 16 15 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 16 C 0.14 5.19 4.44 86.38 0.38 5.58 16 17 N -0.68 -28.05 3.83 -467.11 -1.79 -29.84 16 18 C 0.59 24.45 7.79 86.44 0.67 25.12 16 19 O -0.56 -24.53 15.63 -4.33 -0.07 -24.60 16 20 C -0.09 -3.48 7.11 23.77 0.17 -3.31 16 21 O -0.18 -6.53 10.44 -14.46 -0.15 -6.68 16 22 C 0.02 0.49 12.06 66.83 0.81 1.29 16 23 C -0.25 -6.69 6.04 -20.12 -0.12 -6.81 16 24 C -0.10 -3.40 6.02 -19.84 -0.12 -3.52 16 25 C -0.09 -2.43 5.71 30.09 0.17 -2.26 16 26 C 0.07 1.44 6.75 72.21 0.49 1.93 16 27 O -0.40 -9.37 10.70 -148.98 -1.59 -10.97 16 28 C 0.14 2.66 7.27 71.25 0.52 3.18 16 29 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 30 H 0.05 2.77 6.11 -2.39 -0.01 2.75 16 31 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.05 2.12 7.44 -2.38 -0.02 2.10 16 39 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 40 H 0.41 18.27 7.13 -92.71 -0.66 17.61 16 41 H 0.25 3.88 8.06 -2.91 -0.02 3.85 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.09 2.65 7.64 -2.39 -0.02 2.63 16 44 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 46 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -67.67 370.83 2.09 -65.58 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.33 Total: 28.19 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 5.10 Total: 12.10 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -3.55 Total: -111.34 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.81 Total: -42.25 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -67.67 2.09 -65.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024580691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.880 kcal (2) G-P(sol) polarization free energy of solvation -67.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds