Wall clock time and date at job start Tue Mar 31 2020 20:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48503 * 109.47715 * 240.00366 * 3 2 1 5 5 H 1.48506 * 109.46962 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47068 * 120.00108 * 3 2 1 7 7 C 1.38806 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00110 * 190.06919 * 7 2 1 9 9 N 1.36936 * 120.00095 * 10.34275 * 7 2 1 10 10 C 1.46931 * 120.62584 * 32.50850 * 9 7 2 11 11 C 1.53198 * 108.77492 * 126.37103 * 10 9 7 12 12 C 1.53046 * 109.31175 * 54.62937 * 11 10 9 13 13 C 1.53040 * 109.54063 * 298.63684 * 12 11 10 14 14 C 1.46922 * 120.63371 * 212.23124 * 9 7 2 15 15 H 1.08999 * 109.58995 * 113.84194 * 14 9 7 16 16 C 1.53004 * 109.58598 * 353.41706 * 14 9 7 17 17 N 1.46492 * 109.46928 * 60.10899 * 16 14 9 18 18 C 1.34783 * 119.99852 * 180.02562 * 17 16 14 19 19 O 1.21691 * 119.99750 * 0.02562 * 18 17 16 20 20 C 1.46656 * 119.99881 * 180.02562 * 18 17 16 21 21 O 1.35391 * 126.12044 * 359.69162 * 20 18 17 22 22 C 1.34400 * 109.47985 * 179.84017 * 21 20 18 23 23 C 1.33900 * 108.55532 * 0.37496 * 22 21 20 24 24 C 1.35180 * 126.11817 * 179.97438 * 20 18 17 25 25 C 1.50726 * 130.57904 * 0.16754 * 24 20 18 26 26 C 1.53671 * 107.44409 * 164.16725 * 25 24 20 27 27 O 1.42901 * 109.97880 * 48.24941 * 26 25 24 28 28 C 1.43513 * 114.76941 * 287.63086 * 27 26 25 29 29 H 0.97007 * 120.00128 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.58510 * 246.15204 * 10 9 7 31 31 H 1.08997 * 109.59222 * 6.44294 * 10 9 7 32 32 H 1.08995 * 109.50082 * 174.58173 * 11 10 9 33 33 H 1.09001 * 109.49242 * 294.68422 * 11 10 9 34 34 H 1.09004 * 109.45903 * 58.66079 * 12 11 10 35 35 H 1.08996 * 109.45588 * 178.62542 * 12 11 10 36 36 H 1.08993 * 109.49472 * 181.31186 * 13 12 11 37 37 H 1.08995 * 109.49583 * 301.41282 * 13 12 11 38 38 H 1.08998 * 109.46771 * 180.11208 * 16 14 9 39 39 H 1.09001 * 109.46574 * 300.10648 * 16 14 9 40 40 H 0.97001 * 120.00122 * 0.02562 * 17 16 14 41 41 H 1.07994 * 125.72266 * 180.02562 * 22 21 20 42 42 H 1.08994 * 109.86440 * 283.65641 * 25 24 20 43 43 H 1.09001 * 109.86003 * 44.68536 * 25 24 20 44 44 H 1.09002 * 109.38870 * 168.40724 * 26 25 24 45 45 H 1.09005 * 109.38953 * 288.09444 * 26 25 24 46 46 H 1.08999 * 109.82420 * 171.04138 * 28 27 26 47 47 H 1.08995 * 109.83099 * 291.91148 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0778 -1.2093 0.1630 9 7 1.3423 -2.3783 -0.2140 10 6 0.1669 -2.4225 -1.0945 11 6 0.3846 -3.5081 -2.1533 12 6 0.7009 -4.8352 -1.4599 13 6 1.9872 -4.6922 -0.6431 14 6 1.7909 -3.6212 0.4283 15 1 1.0383 -3.9559 1.1422 16 6 3.1157 -3.3747 1.1531 17 7 2.9286 -2.3413 2.1744 18 6 3.9674 -1.9573 2.9427 19 8 5.0607 -2.4687 2.7875 20 6 3.7800 -0.9231 3.9655 21 8 2.6255 -0.2708 4.2388 22 6 2.8305 0.6032 5.2390 23 6 4.1141 0.5294 5.6129 24 6 4.7303 -0.4469 4.8006 25 6 6.1888 -0.8040 4.9317 26 6 6.8644 0.3099 5.7466 27 8 6.0974 0.5910 6.9191 28 6 4.8649 1.2858 6.6791 29 1 -0.4851 0.8401 0.0004 30 1 -0.7208 -2.6575 -0.5075 31 1 0.0380 -1.4555 -1.5808 32 1 -0.5187 -3.6174 -2.7534 33 1 1.2179 -3.2264 -2.7971 34 1 -0.1220 -5.1039 -0.7974 35 1 0.8321 -5.6147 -2.2103 36 1 2.2243 -5.6442 -0.1684 37 1 2.8053 -4.3995 -1.3012 38 1 3.4477 -4.2983 1.6272 39 1 3.8665 -3.0445 0.4352 40 1 2.0572 -1.9335 2.2978 41 1 2.0862 1.2594 5.6654 42 1 6.2915 -1.7570 5.4507 43 1 6.6445 -0.8685 3.9436 44 1 7.8651 -0.0102 6.0369 45 1 6.9371 1.2108 5.1372 46 1 4.2744 1.3182 7.5947 47 1 5.0725 2.2997 6.3373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024580696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:00 Heat of formation + Delta-G solvation = -46.765412 kcal Electronic energy + Delta-G solvation = -30251.926263 eV Core-core repulsion = 26208.870539 eV Total energy + Delta-G solvation = -4043.055724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 13.17 seconds Orbital eigenvalues (eV) -42.63709 -39.12044 -38.55189 -37.69611 -34.37377 -33.40060 -33.08729 -32.03075 -30.91736 -29.95027 -29.08154 -26.27652 -26.07803 -24.94881 -23.49274 -22.43869 -22.10233 -20.70220 -19.68046 -19.58736 -19.09887 -17.84314 -16.58335 -16.39055 -16.13436 -15.83180 -15.57286 -15.30700 -15.16059 -14.84516 -14.27145 -14.06501 -13.77013 -13.58348 -13.40999 -13.38552 -13.05658 -12.84104 -12.63726 -12.44933 -12.12676 -12.04612 -11.79884 -11.54817 -11.24764 -10.95696 -10.94922 -10.80985 -10.59588 -10.32115 -10.16889 -10.04234 -10.01143 -9.71245 -9.51460 -9.38398 -9.33750 -8.69350 -8.51523 -8.20211 -6.66007 -5.86680 -3.35402 1.34826 2.33807 2.95991 3.31804 3.36319 3.40143 3.58253 3.66455 3.81914 4.40575 4.50406 4.73625 4.92957 5.03112 5.17231 5.21106 5.24271 5.30173 5.30485 5.47337 5.47718 5.61783 5.66212 5.68797 5.83050 5.90698 5.94139 6.01278 6.08569 6.10877 6.12483 6.27217 6.34220 6.38135 6.43271 6.57241 6.69015 6.71724 6.83403 6.91425 6.94851 7.02980 7.12202 7.37217 7.65371 7.75216 8.13888 8.39270 8.65600 9.14175 9.74634 10.33254 11.20031 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015013 B = 0.003971 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.583058 B = 7048.973757 C = 8154.546357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.013 3.987 3 Si 0.892 3.108 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.133 3.867 17 N -0.677 5.677 18 C 0.591 3.409 19 O -0.542 6.542 20 C -0.045 4.045 21 O -0.155 6.155 22 C 0.010 3.990 23 C -0.244 4.244 24 C -0.101 4.101 25 C -0.082 4.082 26 C 0.063 3.937 27 O -0.381 6.381 28 C 0.139 3.861 29 H 0.255 0.745 30 H 0.018 0.982 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.420 0.580 41 H 0.208 0.792 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.053 0.947 46 H 0.104 0.896 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 -1.355 8.720 10.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.186 4.186 3 Si 0.722 3.278 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.010 3.990 17 N -0.327 5.327 18 C 0.377 3.623 19 O -0.424 6.424 20 C -0.097 4.097 21 O -0.050 6.050 22 C -0.059 4.059 23 C -0.246 4.246 24 C -0.104 4.104 25 C -0.119 4.119 26 C -0.014 4.014 27 O -0.300 6.300 28 C 0.062 3.938 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.259 0.741 41 H 0.224 0.776 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.071 0.929 46 H 0.122 0.878 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.794 -1.691 8.607 10.512 hybrid contribution -0.217 1.379 -0.300 1.428 sum 5.577 -0.311 8.306 10.010 Atomic orbital electron populations 1.69961 1.05109 1.25595 1.53521 1.25084 0.95223 0.98021 1.00292 0.86522 0.79083 0.83832 0.78359 1.20984 1.21537 1.20778 1.19095 0.91010 0.83589 1.44594 0.91567 1.44043 1.32980 1.03112 1.51144 1.20779 0.88041 0.96964 0.89421 1.22205 0.99838 0.96805 0.99541 1.21361 0.97369 0.97418 0.98349 1.21866 0.98135 0.98086 0.98615 1.20650 0.92849 0.88755 0.92433 0.95013 1.21385 0.98631 0.89375 0.89643 1.45978 1.13234 1.39521 1.33951 1.16522 0.85019 0.80737 0.80066 1.90793 1.24997 1.56185 1.70384 1.21626 0.84609 1.00960 1.02470 1.84431 1.33904 1.42636 1.44019 1.23569 0.97197 0.94871 0.90313 1.20919 0.95276 1.04234 1.04167 1.20079 0.97037 0.97472 0.95852 1.20802 0.89600 0.99505 1.01958 1.22694 0.94531 0.97193 0.86970 1.87944 1.32919 1.77726 1.31377 1.20978 0.83936 0.93020 0.95861 0.93517 0.96393 0.89573 0.93536 0.92860 0.92865 0.93694 0.92949 0.92065 0.92240 0.91223 0.74080 0.77559 0.89465 0.88589 0.88292 0.92904 0.87825 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.37 11.12 55.49 0.62 -23.75 16 2 C 0.01 0.35 5.05 -17.43 -0.09 0.26 16 3 Si 0.89 21.36 29.56 -169.99 -5.03 16.33 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.35 6.91 -15.06 -0.10 -6.45 16 8 H 0.07 1.71 5.92 -52.48 -0.31 1.40 16 9 N -0.59 -13.44 2.98 -165.02 -0.49 -13.93 16 10 C 0.17 3.90 5.25 -3.71 -0.02 3.88 16 11 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16 12 C -0.11 -1.74 5.89 -26.69 -0.16 -1.90 16 13 C -0.13 -2.11 5.35 -26.83 -0.14 -2.25 16 14 C 0.16 3.08 3.00 -67.82 -0.20 2.88 16 15 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 16 C 0.13 2.51 4.42 -4.04 -0.02 2.50 16 17 N -0.68 -13.54 3.86 -61.63 -0.24 -13.77 16 18 C 0.59 11.89 7.79 -12.86 -0.10 11.79 16 19 O -0.54 -11.49 15.63 5.20 0.08 -11.41 16 20 C -0.04 -0.84 7.11 -37.27 -0.27 -1.10 16 21 O -0.15 -2.79 10.44 2.34 0.02 -2.76 16 22 C 0.01 0.15 12.06 29.21 0.35 0.50 16 23 C -0.24 -3.49 6.04 -105.01 -0.63 -4.12 16 24 C -0.10 -1.69 6.02 -104.59 -0.63 -2.32 16 25 C -0.08 -1.18 5.71 -27.52 -0.16 -1.33 16 26 C 0.06 0.74 6.75 37.51 0.25 1.00 16 27 O -0.38 -4.92 10.70 -35.23 -0.38 -5.30 16 28 C 0.14 1.56 7.27 36.03 0.26 1.83 16 29 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 2.19 6.18 -51.93 -0.32 1.87 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.42 7.42 -51.93 -0.39 1.03 16 40 H 0.42 8.96 7.15 -40.82 -0.29 8.67 16 41 H 0.21 1.94 8.06 -52.49 -0.42 1.51 16 42 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.10 1.44 7.64 -51.93 -0.40 1.05 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 46 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 370.90 15.07 5.59 5.59 Total: -1.00 -29.73 370.90 -8.81 -38.54 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -7.18 Total: 8.15 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.81 Total: 2.31 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.11 Total: -51.46 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.27 Total: -19.47 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.73 -8.81 -38.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024580696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.223 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.17 seconds