Wall clock time and date at job start Tue Mar 31 2020 20:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48503 * 109.47715 * 240.00366 * 3 2 1 5 5 H 1.48506 * 109.46962 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47068 * 120.00108 * 3 2 1 7 7 C 1.38806 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00110 * 190.06919 * 7 2 1 9 9 N 1.36936 * 120.00095 * 10.34275 * 7 2 1 10 10 C 1.46931 * 120.62584 * 32.50850 * 9 7 2 11 11 C 1.53198 * 108.77492 * 126.37103 * 10 9 7 12 12 C 1.53046 * 109.31175 * 54.62937 * 11 10 9 13 13 C 1.53040 * 109.54063 * 298.63684 * 12 11 10 14 14 C 1.46922 * 120.63371 * 212.23124 * 9 7 2 15 15 H 1.08999 * 109.58995 * 113.84194 * 14 9 7 16 16 C 1.53004 * 109.58598 * 353.41706 * 14 9 7 17 17 N 1.46492 * 109.46928 * 60.10899 * 16 14 9 18 18 C 1.34783 * 119.99852 * 180.02562 * 17 16 14 19 19 O 1.21691 * 119.99750 * 0.02562 * 18 17 16 20 20 C 1.46656 * 119.99881 * 180.02562 * 18 17 16 21 21 O 1.35391 * 126.12044 * 359.69162 * 20 18 17 22 22 C 1.34400 * 109.47985 * 179.84017 * 21 20 18 23 23 C 1.33900 * 108.55532 * 0.37496 * 22 21 20 24 24 C 1.35180 * 126.11817 * 179.97438 * 20 18 17 25 25 C 1.50726 * 130.57904 * 0.16754 * 24 20 18 26 26 C 1.53671 * 107.44409 * 164.16725 * 25 24 20 27 27 O 1.42901 * 109.97880 * 48.24941 * 26 25 24 28 28 C 1.43513 * 114.76941 * 287.63086 * 27 26 25 29 29 H 0.97007 * 120.00128 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.58510 * 246.15204 * 10 9 7 31 31 H 1.08997 * 109.59222 * 6.44294 * 10 9 7 32 32 H 1.08995 * 109.50082 * 174.58173 * 11 10 9 33 33 H 1.09001 * 109.49242 * 294.68422 * 11 10 9 34 34 H 1.09004 * 109.45903 * 58.66079 * 12 11 10 35 35 H 1.08996 * 109.45588 * 178.62542 * 12 11 10 36 36 H 1.08993 * 109.49472 * 181.31186 * 13 12 11 37 37 H 1.08995 * 109.49583 * 301.41282 * 13 12 11 38 38 H 1.08998 * 109.46771 * 180.11208 * 16 14 9 39 39 H 1.09001 * 109.46574 * 300.10648 * 16 14 9 40 40 H 0.97001 * 120.00122 * 0.02562 * 17 16 14 41 41 H 1.07994 * 125.72266 * 180.02562 * 22 21 20 42 42 H 1.08994 * 109.86440 * 283.65641 * 25 24 20 43 43 H 1.09001 * 109.86003 * 44.68536 * 25 24 20 44 44 H 1.09002 * 109.38870 * 168.40724 * 26 25 24 45 45 H 1.09005 * 109.38953 * 288.09444 * 26 25 24 46 46 H 1.08999 * 109.82420 * 171.04138 * 28 27 26 47 47 H 1.08995 * 109.83099 * 291.91148 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0778 -1.2093 0.1630 9 7 1.3423 -2.3783 -0.2140 10 6 0.1669 -2.4225 -1.0945 11 6 0.3846 -3.5081 -2.1533 12 6 0.7009 -4.8352 -1.4599 13 6 1.9872 -4.6922 -0.6431 14 6 1.7909 -3.6212 0.4283 15 1 1.0383 -3.9559 1.1422 16 6 3.1157 -3.3747 1.1531 17 7 2.9286 -2.3413 2.1744 18 6 3.9674 -1.9573 2.9427 19 8 5.0607 -2.4687 2.7875 20 6 3.7800 -0.9231 3.9655 21 8 2.6255 -0.2708 4.2388 22 6 2.8305 0.6032 5.2390 23 6 4.1141 0.5294 5.6129 24 6 4.7303 -0.4469 4.8006 25 6 6.1888 -0.8040 4.9317 26 6 6.8644 0.3099 5.7466 27 8 6.0974 0.5910 6.9191 28 6 4.8649 1.2858 6.6791 29 1 -0.4851 0.8401 0.0004 30 1 -0.7208 -2.6575 -0.5075 31 1 0.0380 -1.4555 -1.5808 32 1 -0.5187 -3.6174 -2.7534 33 1 1.2179 -3.2264 -2.7971 34 1 -0.1220 -5.1039 -0.7974 35 1 0.8321 -5.6147 -2.2103 36 1 2.2243 -5.6442 -0.1684 37 1 2.8053 -4.3995 -1.3012 38 1 3.4477 -4.2983 1.6272 39 1 3.8665 -3.0445 0.4352 40 1 2.0572 -1.9335 2.2978 41 1 2.0862 1.2594 5.6654 42 1 6.2915 -1.7570 5.4507 43 1 6.6445 -0.8685 3.9436 44 1 7.8651 -0.0102 6.0369 45 1 6.9371 1.2108 5.1372 46 1 4.2744 1.3182 7.5947 47 1 5.0725 2.2997 6.3373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024580696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:51 Heat of formation + Delta-G solvation = -65.265057 kcal Electronic energy + Delta-G solvation = -30252.728468 eV Core-core repulsion = 26208.870539 eV Total energy + Delta-G solvation = -4043.857928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.86901 -40.68698 -39.55071 -39.29475 -35.88581 -34.93894 -34.59004 -33.13345 -32.45217 -31.72242 -30.33731 -27.76028 -27.20538 -26.62798 -24.65102 -23.91872 -23.60927 -22.25549 -21.12483 -20.75842 -20.63106 -19.22943 -18.22805 -17.68304 -17.36043 -17.18947 -17.11729 -16.73286 -16.20557 -16.06295 -15.90502 -15.72535 -15.26393 -15.10675 -14.83900 -14.58455 -14.48284 -14.22589 -14.07332 -13.67834 -13.63616 -13.47071 -13.22312 -12.89201 -12.83763 -12.60531 -12.58055 -12.38565 -12.07162 -11.93224 -11.81298 -11.53815 -11.45185 -11.11772 -11.04641 -10.80785 -10.55791 -10.50009 -10.06702 -9.59199 -8.55363 -7.85699 -5.34526 0.01485 1.19644 1.36716 1.39121 1.44103 1.71228 2.09456 2.33898 2.45866 2.80549 3.30205 3.40802 3.55273 3.64007 3.81851 3.93181 3.95844 4.18901 4.21439 4.25948 4.28908 4.36159 4.40661 4.48063 4.53412 4.62550 4.69109 4.70685 4.79949 4.82158 4.85613 4.95815 4.98959 5.03049 5.12919 5.21581 5.27498 5.28377 5.34240 5.45504 5.49261 5.62439 5.71821 5.79287 5.84498 6.10970 6.42888 6.54758 7.07141 7.18113 7.86023 8.39465 9.18468 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015013 B = 0.003971 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.583058 B = 7048.973757 C = 8154.546357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.028 4.028 3 Si 0.937 3.063 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.287 1.287 7 C -0.237 4.237 8 H 0.056 0.944 9 N -0.602 5.602 10 C 0.178 3.822 11 C -0.136 4.136 12 C -0.103 4.103 13 C -0.121 4.121 14 C 0.159 3.841 15 H 0.031 0.969 16 C 0.137 3.863 17 N -0.682 5.682 18 C 0.589 3.411 19 O -0.563 6.563 20 C -0.090 4.090 21 O -0.180 6.180 22 C 0.019 3.981 23 C -0.251 4.251 24 C -0.103 4.103 25 C -0.084 4.084 26 C 0.067 3.933 27 O -0.392 6.392 28 C 0.137 3.863 29 H 0.249 0.751 30 H 0.000 1.000 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.413 0.587 41 H 0.252 0.748 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.125 0.875 45 H 0.059 0.941 46 H 0.132 0.868 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.016 -1.682 9.847 11.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.225 4.225 3 Si 0.767 3.233 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.367 4.367 8 H 0.074 0.926 9 N -0.327 5.327 10 C 0.053 3.947 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.053 3.947 15 H 0.049 0.951 16 C 0.014 3.986 17 N -0.330 5.330 18 C 0.376 3.624 19 O -0.446 6.446 20 C -0.142 4.142 21 O -0.076 6.076 22 C -0.050 4.050 23 C -0.252 4.252 24 C -0.106 4.106 25 C -0.121 4.121 26 C -0.009 4.009 27 O -0.310 6.310 28 C 0.061 3.939 29 H 0.058 0.942 30 H 0.018 0.982 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.250 0.750 41 H 0.268 0.732 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.143 0.857 45 H 0.077 0.923 46 H 0.150 0.850 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.439 -2.041 9.728 11.843 hybrid contribution -0.400 1.476 -0.582 1.637 sum 6.039 -0.565 9.146 10.974 Atomic orbital electron populations 1.70073 1.05855 1.25397 1.55500 1.25503 0.95695 0.99896 1.01415 0.85821 0.77963 0.81862 0.77654 1.21389 1.21540 1.21361 1.19085 0.90567 0.84555 1.42526 0.92603 1.44234 1.32829 1.03747 1.51870 1.20596 0.87378 0.96770 0.89996 1.22059 1.00459 0.96640 0.98311 1.21348 0.97114 0.96639 0.98916 1.21820 0.98275 0.98295 0.97692 1.20817 0.92643 0.87997 0.93221 0.95116 1.21401 0.97985 0.89946 0.89263 1.46006 1.12848 1.39858 1.34318 1.16752 0.84626 0.80863 0.80195 1.90754 1.25427 1.57148 1.71222 1.21466 0.85856 1.02695 1.04134 1.84398 1.33995 1.43681 1.45561 1.24556 0.98392 0.93569 0.88479 1.21353 0.95413 1.03862 1.04597 1.20581 0.97754 0.97159 0.95091 1.20891 0.88679 1.00685 1.01893 1.22758 0.95197 0.96374 0.86604 1.87936 1.33452 1.77962 1.31672 1.21297 0.83317 0.93084 0.96153 0.94174 0.98197 0.93067 0.91712 0.93599 0.92464 0.90589 0.89734 0.92646 0.90110 0.92998 0.75034 0.73172 0.89620 0.89803 0.85733 0.92299 0.84985 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.61 11.12 21.65 0.24 -51.37 16 2 C -0.03 -1.52 5.05 84.86 0.43 -1.09 16 3 Si 0.94 44.98 29.56 68.60 2.03 47.01 16 4 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 7 C -0.24 -12.17 6.91 84.03 0.58 -11.59 16 8 H 0.06 2.98 5.92 -2.91 -0.02 2.97 16 9 N -0.60 -27.91 2.98 -676.01 -2.01 -29.92 16 10 C 0.18 8.13 5.25 86.36 0.45 8.58 16 11 C -0.14 -4.84 6.08 30.68 0.19 -4.65 16 12 C -0.10 -3.05 5.89 30.62 0.18 -2.87 16 13 C -0.12 -3.75 5.35 30.53 0.16 -3.59 16 14 C 0.16 6.05 3.00 44.83 0.13 6.19 16 15 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 16 C 0.14 5.21 4.42 86.38 0.38 5.59 16 17 N -0.68 -28.07 3.86 -467.11 -1.80 -29.87 16 18 C 0.59 24.46 7.79 86.44 0.67 25.13 16 19 O -0.56 -24.54 15.63 -4.32 -0.07 -24.61 16 20 C -0.09 -3.47 7.11 23.76 0.17 -3.30 16 21 O -0.18 -6.53 10.44 -14.53 -0.15 -6.68 16 22 C 0.02 0.49 12.06 66.83 0.81 1.30 16 23 C -0.25 -6.69 6.04 -20.12 -0.12 -6.82 16 24 C -0.10 -3.40 6.02 -19.84 -0.12 -3.52 16 25 C -0.08 -2.40 5.71 30.08 0.17 -2.23 16 26 C 0.07 1.46 6.75 72.21 0.49 1.94 16 27 O -0.39 -9.03 10.70 -148.98 -1.59 -10.63 16 28 C 0.14 2.66 7.27 71.25 0.52 3.18 16 29 H 0.25 13.73 8.31 -92.70 -0.77 12.96 16 30 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.05 2.69 6.18 -2.39 -0.01 2.67 16 32 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.05 2.14 7.42 -2.39 -0.02 2.13 16 40 H 0.41 18.28 7.15 -92.71 -0.66 17.62 16 41 H 0.25 3.87 8.06 -2.91 -0.02 3.85 16 42 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.08 2.57 7.64 -2.39 -0.02 2.55 16 44 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.06 1.21 8.08 -2.38 -0.02 1.19 16 46 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -66.85 370.90 2.06 -64.79 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.32 Total: 29.01 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 5.09 Total: 12.27 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -3.57 Total: -111.16 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -1.81 Total: -41.92 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.85 2.06 -64.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024580696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.472 kcal (2) G-P(sol) polarization free energy of solvation -66.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds