Wall clock time and date at job start Tue Mar 31 2020 20:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 119.99896 * 2 1 4 4 H 1.48508 * 109.47212 * 269.99875 * 3 2 1 5 5 H 1.48508 * 109.47296 * 29.99928 * 3 2 1 6 6 H 1.48501 * 109.47306 * 149.99787 * 3 2 1 7 7 C 1.38811 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99472 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99776 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47286 * 204.99980 * 10 9 7 12 12 C 1.53000 * 109.47350 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.46929 * 60.00332 * 12 11 10 14 14 N 1.46499 * 109.47560 * 60.00000 * 13 12 11 15 15 C 1.34777 * 120.00289 * 154.99853 * 14 13 12 16 16 O 1.21689 * 119.99797 * 0.02562 * 15 14 13 17 17 C 1.46654 * 119.99653 * 180.02562 * 15 14 13 18 18 O 1.35387 * 126.12387 * 0.03041 * 17 15 14 19 19 C 1.34402 * 109.48247 * 179.97438 * 18 17 15 20 20 C 1.33905 * 108.55522 * 359.95940 * 19 18 17 21 21 C 1.35197 * 126.11512 * 179.97438 * 17 15 14 22 22 C 1.50483 * 130.61115 * 0.32032 * 21 17 15 23 23 C 1.53679 * 107.56022 * 164.08891 * 22 21 17 24 24 O 1.42904 * 109.89275 * 48.26773 * 23 22 21 25 25 C 1.43515 * 114.76350 * 287.67711 * 24 23 22 26 26 C 1.53003 * 109.47146 * 299.99794 * 13 12 11 27 27 C 1.53000 * 109.47039 * 60.00273 * 26 13 12 28 28 H 0.97003 * 119.99978 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00369 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47521 * 325.00863 * 10 9 7 31 31 H 1.09002 * 109.46671 * 60.00062 * 11 10 9 32 32 H 1.09003 * 109.47060 * 300.00994 * 11 10 9 33 33 H 1.09000 * 109.46893 * 300.00368 * 12 11 10 34 34 H 1.08994 * 109.47010 * 179.97438 * 12 11 10 35 35 H 1.08998 * 109.47321 * 180.02562 * 13 12 11 36 36 H 0.97002 * 119.99764 * 335.00039 * 14 13 12 37 37 H 1.08001 * 125.72437 * 179.91461 * 19 18 17 38 38 H 1.08999 * 109.74598 * 44.60396 * 22 21 17 39 39 H 1.09003 * 109.86203 * 283.64418 * 22 21 17 40 40 H 1.09002 * 109.38705 * 288.16262 * 23 22 21 41 41 H 1.08996 * 109.38325 * 168.36949 * 23 22 21 42 42 H 1.09000 * 109.82084 * 171.04271 * 25 24 23 43 43 H 1.09008 * 109.82098 * 291.90152 * 25 24 23 44 44 H 1.09008 * 109.47063 * 179.97438 * 26 13 12 45 45 H 1.08991 * 109.47342 * 300.00346 * 26 13 12 46 46 H 1.08998 * 109.47418 * 179.97438 * 27 26 13 47 47 H 1.09002 * 109.47254 * 60.00216 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0016 11 6 1.1805 -4.7524 -0.6068 12 6 1.9453 -6.0776 -0.6063 13 6 2.3097 -6.4554 0.8308 14 7 1.0860 -6.5975 1.6237 15 6 1.0805 -7.3816 2.7199 16 8 2.0921 -7.9712 3.0513 17 6 -0.1447 -7.5242 3.5132 18 8 -1.3339 -6.9290 3.2591 19 6 -2.2260 -7.2914 4.1968 20 6 -1.6244 -8.1202 5.0596 21 6 -0.2890 -8.2745 4.6286 22 6 0.7006 -9.1381 5.3630 23 6 0.1201 -9.4262 6.7565 24 8 -1.2386 -9.8531 6.6385 25 6 -2.1654 -8.8170 6.2818 26 6 3.1873 -5.3598 1.4393 27 6 2.4225 -4.0346 1.4387 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3881 0.0016 30 1 2.9684 -3.5508 -0.5885 31 1 0.9205 -4.4830 -1.6305 32 1 0.2701 -4.8583 -0.0167 33 1 2.8557 -5.9718 -1.1962 34 1 1.3199 -6.8582 -1.0393 35 1 2.8549 -7.3992 0.8313 36 1 0.2797 -6.1272 1.3597 37 1 -3.2552 -6.9679 4.2465 38 1 1.6496 -8.6107 5.4590 39 1 0.8485 -10.0732 4.8228 40 1 0.1636 -8.5202 7.3609 41 1 0.7052 -10.2102 7.2371 42 1 -3.1394 -9.2529 6.0594 43 1 -2.2578 -8.1052 7.1022 44 1 3.4465 -5.6288 2.4634 45 1 4.0977 -5.2541 0.8495 46 1 3.0475 -3.2542 1.8726 47 1 1.5120 -4.1403 2.0287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026535034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:40 Heat of formation + Delta-G solvation = -65.184777 kcal Electronic energy + Delta-G solvation = -29246.023286 eV Core-core repulsion = 25202.168838 eV Total energy + Delta-G solvation = -4043.854447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.04928 -40.01501 -38.83367 -37.94884 -34.77040 -33.83499 -32.83366 -32.28809 -30.87109 -30.46851 -29.41243 -27.59176 -26.52448 -24.33230 -23.64391 -23.09332 -22.23911 -20.99262 -20.45246 -19.95652 -18.86572 -18.34757 -17.10591 -16.75575 -16.61758 -16.30660 -15.61036 -15.49208 -15.40612 -15.19851 -14.81589 -14.51233 -14.02411 -13.75871 -13.59363 -13.51417 -13.47429 -13.12223 -12.93618 -12.49333 -12.40485 -12.24586 -11.89766 -11.85628 -11.66014 -11.21406 -11.03783 -10.88440 -10.83038 -10.46826 -10.37512 -10.18946 -10.14967 -10.01568 -9.73909 -9.68672 -9.58811 -9.11315 -8.87537 -8.74859 -6.95941 -5.77547 -3.05814 0.89962 1.97630 2.50153 3.07527 3.17279 3.42340 3.46488 3.47848 3.49186 4.16845 4.36930 4.57385 4.59533 4.66665 4.88253 4.92383 4.96504 5.03540 5.04233 5.10581 5.18430 5.36886 5.48496 5.51941 5.53192 5.59624 5.67231 5.70935 5.74348 5.79329 5.84370 5.89239 5.98163 6.05498 6.06538 6.24305 6.32989 6.42039 6.49556 6.55255 6.64399 6.72641 6.79576 6.96627 7.12265 7.45757 7.69616 8.04474 8.41372 9.52408 10.10664 10.45066 11.45225 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.002677 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.447268 B =10455.497761 C =11268.757424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.178 3.822 11 C -0.126 4.126 12 C -0.122 4.122 13 C 0.147 3.853 14 N -0.704 5.704 15 C 0.602 3.398 16 O -0.524 6.524 17 C -0.063 4.063 18 O -0.164 6.164 19 C 0.018 3.982 20 C -0.242 4.242 21 C -0.087 4.087 22 C -0.086 4.086 23 C 0.062 3.938 24 O -0.380 6.380 25 C 0.136 3.864 26 C -0.129 4.129 27 C -0.133 4.133 28 H 0.254 0.746 29 H 0.383 0.617 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.407 0.593 37 H 0.212 0.788 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.054 0.946 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.198 -20.464 9.386 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.068 3.932 11 C -0.164 4.164 12 C -0.161 4.161 13 C 0.044 3.956 14 N -0.355 5.355 15 C 0.388 3.612 16 O -0.402 6.402 17 C -0.114 4.114 18 O -0.060 6.060 19 C -0.052 4.052 20 C -0.244 4.244 21 C -0.090 4.090 22 C -0.123 4.123 23 C -0.015 4.015 24 O -0.298 6.298 25 C 0.060 3.940 26 C -0.168 4.168 27 C -0.174 4.174 28 H 0.064 0.936 29 H 0.216 0.784 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.243 0.757 37 H 0.229 0.771 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.073 0.927 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.425 -20.705 9.362 22.852 hybrid contribution -0.359 1.606 -0.038 1.646 sum -2.785 -19.099 9.325 21.436 Atomic orbital electron populations 1.69657 1.05088 1.25578 1.57923 1.24729 0.95507 0.97650 1.03168 0.86217 0.78678 0.83971 0.77500 1.21751 1.21829 1.20796 1.19239 0.90972 0.84157 1.42370 0.91241 1.42425 1.05717 0.99821 1.88587 1.20224 0.94313 0.85854 0.92795 1.21829 0.98653 0.94258 1.01697 1.21803 1.01645 0.97934 0.94697 1.21071 0.84867 0.99346 0.90347 1.46073 1.15443 1.47352 1.26636 1.16492 0.84740 0.79638 0.80301 1.90842 1.31609 1.48129 1.69632 1.21495 0.86307 1.03116 1.00496 1.84352 1.18435 1.57614 1.45576 1.23650 0.95258 0.97969 0.88307 1.21003 0.95401 1.05279 1.02695 1.20121 0.95337 0.98592 0.94964 1.20828 0.97157 0.99068 0.95240 1.22712 0.82487 1.00747 0.95505 1.87975 1.17190 1.34878 1.89791 1.21026 0.92517 0.89315 0.91168 1.21941 0.98403 0.95595 1.00849 1.22230 0.99627 0.94836 1.00669 0.93578 0.78404 0.93479 0.91342 0.92653 0.90124 0.91701 0.89603 0.75660 0.77120 0.88428 0.89198 0.92714 0.88065 0.87604 0.91485 0.92223 0.91152 0.92071 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.73 -17.75 5.12 -53.42 -0.27 -18.02 16 10 C 0.18 3.38 2.77 -67.93 -0.19 3.19 16 11 C -0.13 -1.92 5.22 -26.73 -0.14 -2.05 16 12 C -0.12 -1.48 5.61 -26.73 -0.15 -1.63 16 13 C 0.15 1.92 2.78 -67.93 -0.19 1.73 16 14 N -0.70 -9.39 4.23 -55.12 -0.23 -9.63 16 15 C 0.60 8.74 7.75 -12.86 -0.10 8.64 16 16 O -0.52 -8.52 15.29 5.20 0.08 -8.44 16 17 C -0.06 -0.85 7.11 -37.27 -0.27 -1.11 16 18 O -0.16 -2.01 10.44 2.35 0.02 -1.99 16 19 C 0.02 0.17 12.06 29.21 0.35 0.52 16 20 C -0.24 -2.49 6.04 -105.02 -0.63 -3.13 16 21 C -0.09 -1.08 6.02 -104.70 -0.63 -1.71 16 22 C -0.09 -0.93 5.69 -27.64 -0.16 -1.09 16 23 C 0.06 0.55 6.76 37.51 0.25 0.81 16 24 O -0.38 -3.86 10.70 -35.23 -0.38 -4.23 16 25 C 0.14 1.11 7.27 36.02 0.26 1.37 16 26 C -0.13 -1.87 5.60 -26.73 -0.15 -2.02 16 27 C -0.13 -2.36 5.34 -26.73 -0.14 -2.51 16 28 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 30 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.83 6.50 -51.93 -0.34 0.49 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.11 7.58 -51.93 -0.39 0.71 16 36 H 0.41 5.25 6.63 -40.82 -0.27 4.98 16 37 H 0.21 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.10 1.10 7.63 -51.93 -0.40 0.71 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.45 8.08 -51.93 -0.42 0.03 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.05 0.98 7.60 -51.93 -0.39 0.59 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -32.95 376.70 -8.67 -41.63 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -7.15 Total: 11.10 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.12 Total: -6.15 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: 0.22 Total: -54.91 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.27 Total: -14.67 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.95 -8.67 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026535034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.558 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds