Wall clock time and date at job start Tue Mar 31 2020 20:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 119.99896 * 2 1 4 4 H 1.48508 * 109.47212 * 269.99875 * 3 2 1 5 5 H 1.48508 * 109.47296 * 29.99928 * 3 2 1 6 6 H 1.48501 * 109.47306 * 149.99787 * 3 2 1 7 7 C 1.38811 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99472 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00011 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99776 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47286 * 204.99980 * 10 9 7 12 12 C 1.53000 * 109.47350 * 180.02562 * 11 10 9 13 13 C 1.52994 * 109.46929 * 60.00332 * 12 11 10 14 14 N 1.46499 * 109.47560 * 60.00000 * 13 12 11 15 15 C 1.34777 * 120.00289 * 154.99853 * 14 13 12 16 16 O 1.21689 * 119.99797 * 0.02562 * 15 14 13 17 17 C 1.46654 * 119.99653 * 180.02562 * 15 14 13 18 18 O 1.35387 * 126.12387 * 0.03041 * 17 15 14 19 19 C 1.34402 * 109.48247 * 179.97438 * 18 17 15 20 20 C 1.33905 * 108.55522 * 359.95940 * 19 18 17 21 21 C 1.35197 * 126.11512 * 179.97438 * 17 15 14 22 22 C 1.50483 * 130.61115 * 0.32032 * 21 17 15 23 23 C 1.53679 * 107.56022 * 164.08891 * 22 21 17 24 24 O 1.42904 * 109.89275 * 48.26773 * 23 22 21 25 25 C 1.43515 * 114.76350 * 287.67711 * 24 23 22 26 26 C 1.53003 * 109.47146 * 299.99794 * 13 12 11 27 27 C 1.53000 * 109.47039 * 60.00273 * 26 13 12 28 28 H 0.97003 * 119.99978 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00369 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47521 * 325.00863 * 10 9 7 31 31 H 1.09002 * 109.46671 * 60.00062 * 11 10 9 32 32 H 1.09003 * 109.47060 * 300.00994 * 11 10 9 33 33 H 1.09000 * 109.46893 * 300.00368 * 12 11 10 34 34 H 1.08994 * 109.47010 * 179.97438 * 12 11 10 35 35 H 1.08998 * 109.47321 * 180.02562 * 13 12 11 36 36 H 0.97002 * 119.99764 * 335.00039 * 14 13 12 37 37 H 1.08001 * 125.72437 * 179.91461 * 19 18 17 38 38 H 1.08999 * 109.74598 * 44.60396 * 22 21 17 39 39 H 1.09003 * 109.86203 * 283.64418 * 22 21 17 40 40 H 1.09002 * 109.38705 * 288.16262 * 23 22 21 41 41 H 1.08996 * 109.38325 * 168.36949 * 23 22 21 42 42 H 1.09000 * 109.82084 * 171.04271 * 25 24 23 43 43 H 1.09008 * 109.82098 * 291.90152 * 25 24 23 44 44 H 1.09008 * 109.47063 * 179.97438 * 26 13 12 45 45 H 1.08991 * 109.47342 * 300.00346 * 26 13 12 46 46 H 1.08998 * 109.47418 * 179.97438 * 27 26 13 47 47 H 1.09002 * 109.47254 * 60.00216 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0016 11 6 1.1805 -4.7524 -0.6068 12 6 1.9453 -6.0776 -0.6063 13 6 2.3097 -6.4554 0.8308 14 7 1.0860 -6.5975 1.6237 15 6 1.0805 -7.3816 2.7199 16 8 2.0921 -7.9712 3.0513 17 6 -0.1447 -7.5242 3.5132 18 8 -1.3339 -6.9290 3.2591 19 6 -2.2260 -7.2914 4.1968 20 6 -1.6244 -8.1202 5.0596 21 6 -0.2890 -8.2745 4.6286 22 6 0.7006 -9.1381 5.3630 23 6 0.1201 -9.4262 6.7565 24 8 -1.2386 -9.8531 6.6385 25 6 -2.1654 -8.8170 6.2818 26 6 3.1873 -5.3598 1.4393 27 6 2.4225 -4.0346 1.4387 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3881 0.0016 30 1 2.9684 -3.5508 -0.5885 31 1 0.9205 -4.4830 -1.6305 32 1 0.2701 -4.8583 -0.0167 33 1 2.8557 -5.9718 -1.1962 34 1 1.3199 -6.8582 -1.0393 35 1 2.8549 -7.3992 0.8313 36 1 0.2797 -6.1272 1.3597 37 1 -3.2552 -6.9679 4.2465 38 1 1.6496 -8.6107 5.4590 39 1 0.8485 -10.0732 4.8228 40 1 0.1636 -8.5202 7.3609 41 1 0.7052 -10.2102 7.2371 42 1 -3.1394 -9.2529 6.0594 43 1 -2.2578 -8.1052 7.1022 44 1 3.4465 -5.6288 2.4634 45 1 4.0977 -5.2541 0.8495 46 1 3.0475 -3.2542 1.8726 47 1 1.5120 -4.1403 2.0287 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026535034.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:39 Heat of formation + Delta-G solvation = -87.361179 kcal Electronic energy + Delta-G solvation = -29246.984926 eV Core-core repulsion = 25202.168838 eV Total energy + Delta-G solvation = -4044.816088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.90069 -41.16077 -39.56217 -39.22453 -36.35472 -34.77641 -34.29302 -33.12734 -32.48669 -31.72699 -30.45044 -29.07607 -27.21759 -25.77715 -24.96359 -24.05268 -23.50264 -22.41806 -21.43696 -20.81102 -20.16437 -19.29625 -19.03390 -17.62747 -17.44535 -17.14627 -16.96402 -16.68631 -16.26043 -16.21231 -16.01444 -15.70364 -15.48930 -15.20951 -14.84954 -14.73823 -14.47378 -14.28258 -13.91627 -13.69380 -13.60723 -13.24702 -13.12661 -13.10780 -12.86000 -12.80125 -12.59378 -12.17493 -12.05846 -12.02961 -11.93347 -11.73749 -11.41452 -11.33687 -11.14062 -10.84362 -10.82098 -10.52346 -10.18190 -9.64598 -8.98684 -7.94054 -5.21370 -0.03601 1.18484 1.46091 1.47019 1.55215 1.62439 2.02122 2.19714 2.55771 2.81044 3.38573 3.38994 3.58020 3.71002 3.77111 3.85383 3.87532 3.93057 4.18652 4.26970 4.28234 4.30347 4.36853 4.37576 4.49440 4.58163 4.63052 4.64388 4.69836 4.76858 4.78713 4.81160 4.95361 4.99724 5.02291 5.06714 5.13736 5.23400 5.24304 5.27684 5.42702 5.50955 5.55175 5.62885 5.73927 6.11918 6.29125 6.39500 6.96702 7.34852 8.12644 8.34939 9.29441 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015776 B = 0.002677 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.447268 B =10455.497761 C =11268.757424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.968 3.032 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.235 4.235 8 H 0.072 0.928 9 N -0.737 5.737 10 C 0.173 3.827 11 C -0.117 4.117 12 C -0.110 4.110 13 C 0.150 3.850 14 N -0.701 5.701 15 C 0.600 3.400 16 O -0.549 6.549 17 C -0.096 4.096 18 O -0.177 6.177 19 C 0.030 3.970 20 C -0.255 4.255 21 C -0.097 4.097 22 C -0.087 4.087 23 C 0.065 3.935 24 O -0.395 6.395 25 C 0.134 3.866 26 C -0.119 4.119 27 C -0.120 4.120 28 H 0.250 0.750 29 H 0.372 0.628 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.409 0.591 37 H 0.256 0.744 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.121 0.879 42 H 0.130 0.870 43 H 0.084 0.916 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.033 0.967 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 -21.644 9.649 23.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.198 1.198 7 C -0.367 4.367 8 H 0.090 0.910 9 N -0.377 5.377 10 C 0.065 3.935 11 C -0.155 4.155 12 C -0.148 4.148 13 C 0.047 3.953 14 N -0.351 5.351 15 C 0.387 3.613 16 O -0.430 6.430 17 C -0.147 4.147 18 O -0.074 6.074 19 C -0.038 4.038 20 C -0.256 4.256 21 C -0.100 4.100 22 C -0.124 4.124 23 C -0.011 4.011 24 O -0.314 6.314 25 C 0.058 3.942 26 C -0.158 4.158 27 C -0.161 4.161 28 H 0.059 0.941 29 H 0.203 0.797 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.245 0.755 37 H 0.271 0.729 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.138 0.862 42 H 0.148 0.852 43 H 0.101 0.899 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.052 0.948 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.705 -21.919 9.619 24.089 hybrid contribution -0.292 1.919 -0.074 1.943 sum -2.996 -19.999 9.545 22.362 Atomic orbital electron populations 1.69803 1.06457 1.25857 1.59899 1.25493 0.96355 1.00860 1.04179 0.85221 0.77679 0.79951 0.77430 1.21354 1.22367 1.19752 1.19592 0.91294 0.85403 1.40430 0.90976 1.42641 1.05405 1.01039 1.88579 1.20463 0.94473 0.84989 0.93541 1.21706 0.98334 0.94514 1.00976 1.21753 1.02347 0.96449 0.94255 1.21086 0.84622 0.98973 0.90656 1.46069 1.15578 1.47040 1.26458 1.16668 0.84947 0.79294 0.80362 1.90811 1.32626 1.49224 1.70349 1.21365 0.86733 1.05099 1.01515 1.84336 1.18473 1.57922 1.46629 1.24567 0.96205 0.96382 0.86671 1.21346 0.94543 1.05910 1.03812 1.20533 0.96779 0.98046 0.94656 1.20854 0.96694 0.98392 0.96450 1.22769 0.82364 1.01782 0.94217 1.87953 1.17678 1.35997 1.89765 1.21306 0.92887 0.89357 0.90646 1.21856 0.98918 0.94108 1.00961 1.22009 0.98926 0.95892 0.99262 0.94146 0.79661 0.93744 0.91661 0.92625 0.88512 0.89322 0.88692 0.75455 0.72863 0.89474 0.89750 0.92113 0.86157 0.85235 0.89861 0.93090 0.89549 0.94775 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.11 13.06 21.65 0.28 -58.83 16 2 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 3 Si 0.97 46.33 29.55 68.60 2.03 48.36 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.24 -13.01 9.93 84.03 0.83 -12.17 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.74 -36.56 5.12 -322.93 -1.65 -38.21 16 10 C 0.17 6.54 2.77 44.99 0.12 6.66 16 11 C -0.12 -3.42 5.22 30.59 0.16 -3.26 16 12 C -0.11 -2.39 5.61 30.59 0.17 -2.22 16 13 C 0.15 3.69 2.78 44.99 0.13 3.81 16 14 N -0.70 -18.35 4.23 -446.54 -1.89 -20.24 16 15 C 0.60 17.52 7.75 86.44 0.67 18.19 16 16 O -0.55 -18.12 15.29 -4.31 -0.07 -18.19 16 17 C -0.10 -2.60 7.11 23.77 0.17 -2.43 16 18 O -0.18 -4.22 10.44 -14.51 -0.15 -4.38 16 19 C 0.03 0.51 12.06 66.83 0.81 1.31 16 20 C -0.25 -4.82 6.04 -20.12 -0.12 -4.94 16 21 C -0.10 -2.38 6.02 -19.91 -0.12 -2.50 16 22 C -0.09 -1.89 5.69 30.01 0.17 -1.72 16 23 C 0.07 1.08 6.76 72.21 0.49 1.57 16 24 O -0.40 -7.31 10.70 -148.98 -1.59 -8.91 16 25 C 0.13 1.86 7.27 71.25 0.52 2.38 16 26 C -0.12 -3.38 5.60 30.60 0.17 -3.21 16 27 C -0.12 -4.31 5.34 30.60 0.16 -4.15 16 28 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 29 H 0.37 19.78 7.80 -92.71 -0.72 19.05 16 30 H 0.04 1.71 8.08 -2.39 -0.02 1.69 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 32 H 0.06 1.63 6.50 -2.39 -0.02 1.61 16 33 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 35 H 0.10 2.26 7.58 -2.39 -0.02 2.25 16 36 H 0.41 10.38 6.63 -92.71 -0.61 9.77 16 37 H 0.26 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.09 2.04 7.63 -2.39 -0.02 2.03 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 40 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 41 H 0.12 1.47 8.14 -2.39 -0.02 1.46 16 42 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.04 1.52 7.60 -2.39 -0.02 1.50 16 Total: -1.00 -72.49 376.70 1.42 -71.07 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.34 Total: 35.92 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 4.80 Total: -6.61 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -3.26 Total: -117.28 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.81 Total: -31.47 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -72.49 1.42 -71.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026535034.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.288 kcal (2) G-P(sol) polarization free energy of solvation -72.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds