Wall clock time and date at job start Tue Mar 31 2020 21:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00214 * 2 1 4 4 H 1.48494 * 109.47304 * 239.99994 * 3 2 1 5 5 H 1.48504 * 109.47099 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46831 * 119.99815 * 3 2 1 7 7 C 1.38812 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99951 * 195.67800 * 7 2 1 9 9 N 1.36938 * 120.00025 * 15.66421 * 7 2 1 10 10 C 1.47608 * 118.64002 * 26.52147 * 9 7 2 11 11 C 1.53953 * 112.13777 * 137.86546 * 10 9 7 12 12 C 1.50884 * 110.09236 * 319.42863 * 11 10 9 13 13 C 1.52570 * 109.35412 * 91.89662 * 12 11 10 14 14 C 1.47094 * 114.32466 * 274.98066 * 13 12 11 15 15 H 1.08996 * 109.32874 * 302.53824 * 14 13 12 16 16 N 1.46494 * 109.32631 * 182.88704 * 14 13 12 17 17 C 1.34776 * 120.00046 * 154.65378 * 16 14 13 18 18 O 1.21690 * 119.99900 * 359.97438 * 17 16 14 19 19 C 1.46662 * 120.00082 * 179.97438 * 17 16 14 20 20 O 1.35389 * 126.11644 * 359.69135 * 19 17 16 21 21 C 1.34410 * 109.47576 * 179.84518 * 20 19 17 22 22 C 1.33896 * 108.55672 * 0.36824 * 21 20 19 23 23 C 1.35188 * 126.11899 * 179.97438 * 19 17 16 24 24 C 1.50723 * 130.57479 * 0.15687 * 23 19 17 25 25 C 1.53676 * 107.43765 * 164.17801 * 24 23 19 26 26 O 1.42892 * 109.98430 * 48.24895 * 25 24 23 27 27 C 1.43515 * 114.77032 * 287.63595 * 26 25 24 28 28 C 1.44575 * 118.64620 * 206.51086 * 9 7 2 29 29 H 0.97004 * 119.99608 * 359.97438 * 1 2 3 30 30 H 1.08996 * 108.94959 * 17.17523 * 10 9 7 31 31 H 1.09005 * 108.94461 * 258.54371 * 10 9 7 32 32 H 1.09004 * 109.36063 * 199.23845 * 11 10 9 33 33 H 1.09000 * 109.26369 * 79.55984 * 11 10 9 34 34 H 1.08997 * 109.49379 * 331.92647 * 12 11 10 35 35 H 1.09005 * 109.48406 * 211.86004 * 12 11 10 36 36 H 1.08996 * 108.50911 * 153.72269 * 13 12 11 37 37 H 1.09001 * 108.38585 * 36.14603 * 13 12 11 38 38 H 0.97006 * 120.00173 * 334.65470 * 16 14 13 39 39 H 1.07996 * 125.72381 * 180.10623 * 21 20 19 40 40 H 1.09000 * 109.86592 * 283.66425 * 24 23 19 41 41 H 1.08997 * 109.86363 * 44.69421 * 24 23 19 42 42 H 1.09000 * 109.38700 * 168.40907 * 25 24 23 43 43 H 1.09002 * 109.38465 * 288.19492 * 25 24 23 44 44 H 1.08997 * 109.82307 * 171.03858 * 27 26 25 45 45 H 1.09002 * 109.82621 * 291.90562 * 27 26 25 46 46 H 1.09004 * 109.44835 * 150.68736 * 28 9 7 47 47 H 1.08997 * 109.44709 * 30.77806 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0601 -1.2197 0.2522 9 7 1.3637 -2.3659 -0.3213 10 6 0.1797 -2.2984 -1.2001 11 6 0.1719 -3.4239 -2.2505 12 6 1.5633 -3.6347 -2.7947 13 6 2.2712 -4.7066 -1.9715 14 6 2.9229 -4.2027 -0.7528 15 1 3.6415 -3.4286 -1.0218 16 7 3.6228 -5.3037 -0.0867 17 6 4.6754 -5.0464 0.7147 18 8 5.0447 -3.8993 0.8845 19 6 5.3758 -6.1486 1.3821 20 8 5.0685 -7.4637 1.2863 21 6 5.9278 -8.1802 2.0311 22 6 6.7879 -7.3381 2.6177 23 6 6.4404 -6.0329 2.2072 24 6 7.1916 -4.8120 2.6729 25 6 8.0354 -5.2265 3.8887 26 8 8.7509 -6.4290 3.5994 27 6 7.9414 -7.6129 3.5484 28 6 1.8690 -3.6099 0.2147 29 1 -0.4850 0.8401 0.0004 30 1 0.1734 -1.3362 -1.7122 31 1 -0.7196 -2.3782 -0.5892 32 1 -0.4981 -3.1523 -3.0663 33 1 -0.1785 -4.3461 -1.7868 34 1 2.1227 -2.7012 -2.7344 35 1 1.5022 -3.9559 -3.8346 36 1 3.0271 -5.1806 -2.5975 37 1 1.5379 -5.4605 -1.6854 38 1 3.3286 -6.2181 -0.2223 39 1 5.9226 -9.2544 2.1417 40 1 7.8422 -4.4511 1.8763 41 1 6.4875 -4.0310 2.9596 42 1 8.7433 -4.4322 4.1254 43 1 7.3802 -5.3938 4.7436 44 1 8.5311 -8.4479 3.1699 45 1 7.5659 -7.8473 4.5445 46 1 1.0463 -4.3154 0.3319 47 1 2.3299 -3.4263 1.1852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034326947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:33 Heat of formation + Delta-G solvation = -41.715198 kcal Electronic energy + Delta-G solvation = -29697.213692 eV Core-core repulsion = 25654.376962 eV Total energy + Delta-G solvation = -4042.836730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.96879 -39.55096 -38.74681 -37.63717 -34.70121 -33.72856 -33.19514 -32.25134 -30.98206 -30.40783 -29.01472 -26.47130 -26.02422 -24.60163 -23.82322 -23.26623 -22.35712 -20.27312 -19.93698 -19.77899 -19.15861 -18.04170 -16.69457 -16.57061 -16.46907 -16.21404 -15.90798 -15.40957 -15.12049 -15.00355 -14.58469 -14.18773 -13.99888 -13.67845 -13.52508 -13.34783 -13.14390 -12.84979 -12.64257 -12.52563 -12.37820 -12.11012 -11.75095 -11.56601 -11.10224 -11.04178 -10.92101 -10.75957 -10.57276 -10.19164 -10.14211 -10.11772 -9.81382 -9.71619 -9.62782 -9.61639 -9.57868 -8.96151 -8.69038 -8.30084 -6.62323 -5.72818 -3.16382 1.01796 2.05363 2.58112 3.30726 3.35784 3.45156 3.49018 3.52665 3.55769 4.25016 4.45133 4.57454 4.69729 4.79605 5.00146 5.02563 5.08266 5.23867 5.28519 5.35971 5.45557 5.48417 5.53938 5.62913 5.70375 5.75350 5.80819 5.92712 5.98833 6.02720 6.14344 6.17880 6.29563 6.38830 6.57414 6.60531 6.62762 6.67114 6.77068 6.82675 6.87882 6.93214 7.09340 7.46572 7.71756 7.74198 7.93480 8.34172 8.53549 9.30157 9.95101 10.38890 11.34868 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.003273 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.427952 B = 8552.290415 C =10092.340148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.005 3.995 3 Si 0.901 3.099 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.583 5.583 10 C 0.176 3.824 11 C -0.144 4.144 12 C -0.100 4.100 13 C -0.112 4.112 14 C 0.113 3.887 15 H 0.091 0.909 16 N -0.710 5.710 17 C 0.595 3.405 18 O -0.505 6.505 19 C -0.056 4.056 20 O -0.168 6.168 21 C 0.007 3.993 22 C -0.238 4.238 23 C -0.090 4.090 24 C -0.088 4.088 25 C 0.063 3.937 26 O -0.380 6.380 27 C 0.136 3.864 28 C 0.158 3.842 29 H 0.253 0.747 30 H 0.076 0.924 31 H 0.025 0.975 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.396 0.604 39 H 0.210 0.790 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.054 0.946 44 H 0.104 0.896 45 H 0.066 0.934 46 H 0.032 0.968 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.822 -18.471 2.864 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.304 5.304 10 C 0.051 3.949 11 C -0.183 4.183 12 C -0.138 4.138 13 C -0.150 4.150 14 C 0.007 3.993 15 H 0.109 0.891 16 N -0.360 5.360 17 C 0.379 3.621 18 O -0.381 6.381 19 C -0.108 4.108 20 O -0.065 6.065 21 C -0.063 4.063 22 C -0.240 4.240 23 C -0.093 4.093 24 C -0.125 4.125 25 C -0.014 4.014 26 O -0.299 6.299 27 C 0.060 3.940 28 C 0.028 3.972 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.230 0.770 39 H 0.226 0.774 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.072 0.928 44 H 0.122 0.878 45 H 0.084 0.916 46 H 0.050 0.950 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.864 -17.554 2.772 20.830 hybrid contribution 0.004 0.189 -0.003 0.189 sum 10.868 -17.365 2.769 20.672 Atomic orbital electron populations 1.70072 1.05199 1.25456 1.54360 1.25010 0.95239 0.98321 1.00716 0.86389 0.78903 0.83363 0.78278 1.21012 1.21749 1.20834 1.19277 0.92702 0.84776 1.41956 0.91292 1.43579 1.32128 1.01492 1.53170 1.21063 0.88407 0.95831 0.89578 1.22088 0.95878 1.00656 0.99657 1.20826 0.97063 0.99384 0.96556 1.20577 0.99297 0.99027 0.96149 1.21377 0.96197 0.87770 0.93938 0.89117 1.46107 1.31133 1.11140 1.47626 1.16505 0.80252 0.85919 0.79409 1.90933 1.66084 1.19050 1.62021 1.21730 1.00928 0.81930 1.06164 1.84313 1.48426 1.17094 1.56646 1.23547 0.90578 0.97533 0.94599 1.21010 1.02888 0.93669 1.06406 1.20187 0.95515 0.96085 0.97512 1.20891 0.98425 0.94379 0.98761 1.22723 0.95956 0.86893 0.95836 1.87971 1.34447 1.15332 1.92125 1.21012 0.88676 0.88353 0.95997 1.20909 0.93355 0.88553 0.94373 0.93722 0.90598 0.95724 0.92866 0.93688 0.90406 0.93334 0.93328 0.92739 0.77004 0.77363 0.89135 0.88103 0.88004 0.92761 0.87759 0.91588 0.94985 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.36 11.01 55.49 0.61 -25.74 16 2 C 0.01 0.15 4.87 -17.43 -0.08 0.06 16 3 Si 0.90 22.32 29.58 -169.99 -5.03 17.29 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.26 -7.17 9.44 -15.06 -0.14 -7.31 16 8 H 0.07 1.98 7.88 -52.49 -0.41 1.56 16 9 N -0.58 -14.46 2.27 -172.09 -0.39 -14.85 16 10 C 0.18 4.14 4.67 -2.94 -0.01 4.13 16 11 C -0.14 -2.62 5.71 -27.30 -0.16 -2.78 16 12 C -0.10 -1.70 5.51 -28.01 -0.15 -1.86 16 13 C -0.11 -1.75 4.55 -29.79 -0.14 -1.89 16 14 C 0.11 2.05 2.34 -69.79 -0.16 1.88 16 15 H 0.09 1.94 7.57 -51.93 -0.39 1.55 16 16 N -0.71 -10.97 5.05 -56.95 -0.29 -11.26 16 17 C 0.59 10.12 7.72 -12.86 -0.10 10.02 16 18 O -0.50 -10.39 15.29 5.20 0.08 -10.31 16 19 C -0.06 -0.81 7.11 -37.27 -0.27 -1.08 16 20 O -0.17 -2.01 10.44 2.32 0.02 -1.99 16 21 C 0.01 0.06 12.06 29.21 0.35 0.41 16 22 C -0.24 -2.55 6.04 -105.01 -0.63 -3.18 16 23 C -0.09 -1.23 6.02 -104.58 -0.63 -1.86 16 24 C -0.09 -1.12 5.71 -27.52 -0.16 -1.28 16 25 C 0.06 0.65 6.75 37.51 0.25 0.90 16 26 O -0.38 -4.22 10.70 -35.23 -0.38 -4.60 16 27 C 0.14 1.17 7.27 36.03 0.26 1.44 16 28 C 0.16 3.38 5.23 -4.09 -0.02 3.36 16 29 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.08 1.99 6.33 -51.93 -0.33 1.66 16 31 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.77 7.31 -51.93 -0.38 0.39 16 34 H 0.08 1.55 7.48 -51.93 -0.39 1.16 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.78 7.35 -51.93 -0.38 0.40 16 38 H 0.40 4.98 8.34 -40.82 -0.34 4.64 16 39 H 0.21 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.10 1.41 7.64 -51.93 -0.40 1.01 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 44 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 47 H 0.05 1.16 7.96 -51.93 -0.41 0.75 16 LS Contribution 372.07 15.07 5.61 5.61 Total: -1.00 -32.65 372.07 -8.76 -41.41 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.21 Total: 3.46 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.79 Total: 0.97 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.07 Total: -51.85 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.27 Total: -16.89 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.65 -8.76 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034326947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.305 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds