Wall clock time and date at job start Tue Mar 31 2020 21:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00214 * 2 1 4 4 H 1.48494 * 109.47304 * 239.99994 * 3 2 1 5 5 H 1.48504 * 109.47099 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46831 * 119.99815 * 3 2 1 7 7 C 1.38812 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99951 * 195.67800 * 7 2 1 9 9 N 1.36938 * 120.00025 * 15.66421 * 7 2 1 10 10 C 1.47608 * 118.64002 * 26.52147 * 9 7 2 11 11 C 1.53953 * 112.13777 * 137.86546 * 10 9 7 12 12 C 1.50884 * 110.09236 * 319.42863 * 11 10 9 13 13 C 1.52570 * 109.35412 * 91.89662 * 12 11 10 14 14 C 1.47094 * 114.32466 * 274.98066 * 13 12 11 15 15 H 1.08996 * 109.32874 * 302.53824 * 14 13 12 16 16 N 1.46494 * 109.32631 * 182.88704 * 14 13 12 17 17 C 1.34776 * 120.00046 * 154.65378 * 16 14 13 18 18 O 1.21690 * 119.99900 * 359.97438 * 17 16 14 19 19 C 1.46662 * 120.00082 * 179.97438 * 17 16 14 20 20 O 1.35389 * 126.11644 * 359.69135 * 19 17 16 21 21 C 1.34410 * 109.47576 * 179.84518 * 20 19 17 22 22 C 1.33896 * 108.55672 * 0.36824 * 21 20 19 23 23 C 1.35188 * 126.11899 * 179.97438 * 19 17 16 24 24 C 1.50723 * 130.57479 * 0.15687 * 23 19 17 25 25 C 1.53676 * 107.43765 * 164.17801 * 24 23 19 26 26 O 1.42892 * 109.98430 * 48.24895 * 25 24 23 27 27 C 1.43515 * 114.77032 * 287.63595 * 26 25 24 28 28 C 1.44575 * 118.64620 * 206.51086 * 9 7 2 29 29 H 0.97004 * 119.99608 * 359.97438 * 1 2 3 30 30 H 1.08996 * 108.94959 * 17.17523 * 10 9 7 31 31 H 1.09005 * 108.94461 * 258.54371 * 10 9 7 32 32 H 1.09004 * 109.36063 * 199.23845 * 11 10 9 33 33 H 1.09000 * 109.26369 * 79.55984 * 11 10 9 34 34 H 1.08997 * 109.49379 * 331.92647 * 12 11 10 35 35 H 1.09005 * 109.48406 * 211.86004 * 12 11 10 36 36 H 1.08996 * 108.50911 * 153.72269 * 13 12 11 37 37 H 1.09001 * 108.38585 * 36.14603 * 13 12 11 38 38 H 0.97006 * 120.00173 * 334.65470 * 16 14 13 39 39 H 1.07996 * 125.72381 * 180.10623 * 21 20 19 40 40 H 1.09000 * 109.86592 * 283.66425 * 24 23 19 41 41 H 1.08997 * 109.86363 * 44.69421 * 24 23 19 42 42 H 1.09000 * 109.38700 * 168.40907 * 25 24 23 43 43 H 1.09002 * 109.38465 * 288.19492 * 25 24 23 44 44 H 1.08997 * 109.82307 * 171.03858 * 27 26 25 45 45 H 1.09002 * 109.82621 * 291.90562 * 27 26 25 46 46 H 1.09004 * 109.44835 * 150.68736 * 28 9 7 47 47 H 1.08997 * 109.44709 * 30.77806 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0601 -1.2197 0.2522 9 7 1.3637 -2.3659 -0.3213 10 6 0.1797 -2.2984 -1.2001 11 6 0.1719 -3.4239 -2.2505 12 6 1.5633 -3.6347 -2.7947 13 6 2.2712 -4.7066 -1.9715 14 6 2.9229 -4.2027 -0.7528 15 1 3.6415 -3.4286 -1.0218 16 7 3.6228 -5.3037 -0.0867 17 6 4.6754 -5.0464 0.7147 18 8 5.0447 -3.8993 0.8845 19 6 5.3758 -6.1486 1.3821 20 8 5.0685 -7.4637 1.2863 21 6 5.9278 -8.1802 2.0311 22 6 6.7879 -7.3381 2.6177 23 6 6.4404 -6.0329 2.2072 24 6 7.1916 -4.8120 2.6729 25 6 8.0354 -5.2265 3.8887 26 8 8.7509 -6.4290 3.5994 27 6 7.9414 -7.6129 3.5484 28 6 1.8690 -3.6099 0.2147 29 1 -0.4850 0.8401 0.0004 30 1 0.1734 -1.3362 -1.7122 31 1 -0.7196 -2.3782 -0.5892 32 1 -0.4981 -3.1523 -3.0663 33 1 -0.1785 -4.3461 -1.7868 34 1 2.1227 -2.7012 -2.7344 35 1 1.5022 -3.9559 -3.8346 36 1 3.0271 -5.1806 -2.5975 37 1 1.5379 -5.4605 -1.6854 38 1 3.3286 -6.2181 -0.2223 39 1 5.9226 -9.2544 2.1417 40 1 7.8422 -4.4511 1.8763 41 1 6.4875 -4.0310 2.9596 42 1 8.7433 -4.4322 4.1254 43 1 7.3802 -5.3938 4.7436 44 1 8.5311 -8.4479 3.1699 45 1 7.5659 -7.8473 4.5445 46 1 1.0463 -4.3154 0.3319 47 1 2.3299 -3.4263 1.1852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034326947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:32 Heat of formation + Delta-G solvation = -64.066959 kcal Electronic energy + Delta-G solvation = -29698.182937 eV Core-core repulsion = 25654.376962 eV Total energy + Delta-G solvation = -4043.805975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.87927 -40.97240 -39.55446 -39.21482 -36.34260 -34.97261 -34.55598 -33.14358 -32.89088 -31.90792 -30.09936 -27.92426 -27.20038 -26.12441 -25.26460 -24.50893 -23.65071 -21.71862 -21.20193 -20.78580 -20.72468 -19.10708 -18.61947 -17.60180 -17.59770 -17.33333 -16.96933 -16.61917 -16.41044 -16.20279 -15.99237 -15.70744 -15.44355 -15.24858 -14.77743 -14.54631 -14.44892 -14.18588 -14.05977 -13.85398 -13.67419 -13.24059 -13.14673 -13.02498 -12.82639 -12.58974 -12.51419 -12.37896 -12.06177 -11.93212 -11.69586 -11.50695 -11.42134 -11.35219 -11.17210 -10.82595 -10.58108 -10.49753 -10.25534 -9.65191 -8.66202 -7.89054 -5.34973 -0.01474 1.21139 1.41989 1.43205 1.51058 1.58563 2.04774 2.17436 2.50317 2.81004 3.23864 3.39521 3.59377 3.70705 3.78712 3.88057 3.92281 4.07419 4.15833 4.22567 4.29507 4.34618 4.41900 4.47893 4.50886 4.67533 4.70037 4.72567 4.77622 4.80193 4.94388 4.97244 5.01864 5.02465 5.08343 5.18746 5.21989 5.26360 5.33537 5.36232 5.58233 5.61529 5.69534 5.74709 5.82006 6.12337 6.38773 6.47645 7.07473 7.16883 7.92215 8.27560 9.15298 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.003273 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.427952 B = 8552.290415 C =10092.340148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.041 4.041 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.265 4.265 8 H 0.049 0.951 9 N -0.596 5.596 10 C 0.184 3.816 11 C -0.131 4.131 12 C -0.097 4.097 13 C -0.109 4.109 14 C 0.134 3.866 15 H 0.051 0.949 16 N -0.697 5.697 17 C 0.592 3.408 18 O -0.555 6.555 19 C -0.089 4.089 20 O -0.169 6.169 21 C 0.039 3.961 22 C -0.255 4.255 23 C -0.100 4.100 24 C -0.092 4.092 25 C 0.069 3.931 26 O -0.396 6.396 27 C 0.133 3.867 28 C 0.160 3.840 29 H 0.251 0.749 30 H 0.041 0.959 31 H -0.005 1.005 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.415 0.585 39 H 0.266 0.734 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.063 0.937 44 H 0.133 0.867 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.605 -22.310 2.464 25.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.236 4.236 3 Si 0.786 3.214 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.396 4.396 8 H 0.067 0.933 9 N -0.318 5.318 10 C 0.059 3.941 11 C -0.170 4.170 12 C -0.135 4.135 13 C -0.147 4.147 14 C 0.027 3.973 15 H 0.069 0.931 16 N -0.348 5.348 17 C 0.379 3.621 18 O -0.435 6.435 19 C -0.140 4.140 20 O -0.065 6.065 21 C -0.030 4.030 22 C -0.257 4.257 23 C -0.103 4.103 24 C -0.129 4.129 25 C -0.007 4.007 26 O -0.314 6.314 27 C 0.057 3.943 28 C 0.031 3.969 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.014 0.986 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.252 0.748 39 H 0.281 0.719 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.150 0.850 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 11.646 -21.461 2.361 24.531 hybrid contribution -0.192 1.259 0.209 1.291 sum 11.455 -20.202 2.569 23.365 Atomic orbital electron populations 1.70206 1.06186 1.25789 1.55437 1.25637 0.96033 1.00944 1.01033 0.85494 0.77793 0.79962 0.78140 1.20520 1.21162 1.20918 1.19331 0.92096 0.86507 1.41660 0.93284 1.43713 1.32339 1.01714 1.54023 1.20886 0.86599 0.96642 0.89945 1.21948 0.97458 0.99070 0.98478 1.20803 0.95594 0.98263 0.98855 1.20529 1.00388 0.99022 0.94776 1.20837 0.94319 0.87837 0.94288 0.93095 1.45866 1.30554 1.11354 1.47025 1.16864 0.80176 0.86139 0.78946 1.90902 1.67514 1.21390 1.63689 1.21110 1.02139 0.82628 1.08127 1.84300 1.49137 1.15844 1.57255 1.24644 0.87917 0.99241 0.91173 1.21339 1.04423 0.92288 1.07626 1.20545 0.95079 0.97730 0.96944 1.20884 0.98217 0.94097 0.99710 1.22697 0.96034 0.87473 0.94526 1.87947 1.35331 1.16028 1.92144 1.21357 0.88163 0.88055 0.96713 1.20965 0.94393 0.87845 0.93687 0.94027 0.94050 0.98646 0.90915 0.91605 0.94133 0.89707 0.90676 0.90091 0.74815 0.71884 0.90429 0.90356 0.86622 0.91823 0.84966 0.89582 0.93240 0.96705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.30 11.01 21.65 0.24 -56.06 16 2 C -0.04 -2.39 4.87 84.86 0.41 -1.98 16 3 Si 0.96 47.69 29.58 68.60 2.03 49.72 16 4 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.28 -14.02 7.11 99.48 0.71 -13.31 16 7 C -0.27 -15.63 9.44 84.03 0.79 -14.84 16 8 H 0.05 3.03 7.88 -2.91 -0.02 3.01 16 9 N -0.60 -30.92 2.27 -698.36 -1.59 -32.50 16 10 C 0.18 8.91 4.67 86.49 0.40 9.32 16 11 C -0.13 -4.56 5.71 30.23 0.17 -4.39 16 12 C -0.10 -3.12 5.51 29.76 0.16 -2.95 16 13 C -0.11 -3.15 4.55 28.62 0.13 -3.02 16 14 C 0.13 4.91 2.34 43.79 0.10 5.01 16 15 H 0.05 2.30 7.57 -2.39 -0.02 2.28 16 16 N -0.70 -21.46 5.05 -452.30 -2.28 -23.74 16 17 C 0.59 20.98 7.72 86.44 0.67 21.64 16 18 O -0.55 -24.74 15.29 -4.32 -0.07 -24.81 16 19 C -0.09 -2.57 7.11 23.77 0.17 -2.40 16 20 O -0.17 -3.61 10.44 -14.61 -0.15 -3.76 16 21 C 0.04 0.54 12.06 66.83 0.81 1.35 16 22 C -0.26 -4.76 6.04 -20.12 -0.12 -4.89 16 23 C -0.10 -2.71 6.02 -19.84 -0.12 -2.82 16 24 C -0.09 -2.48 5.71 30.08 0.17 -2.31 16 25 C 0.07 1.40 6.75 72.21 0.49 1.88 16 26 O -0.40 -8.04 10.70 -148.98 -1.59 -9.63 16 27 C 0.13 1.84 7.27 71.25 0.52 2.35 16 28 C 0.16 7.08 5.23 87.37 0.46 7.54 16 29 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.04 2.26 6.33 -2.39 -0.02 2.25 16 31 H 0.00 -0.24 8.03 -2.38 -0.02 -0.26 16 32 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 33 H 0.07 2.05 7.31 -2.39 -0.02 2.03 16 34 H 0.04 1.62 7.48 -2.39 -0.02 1.60 16 35 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 37 H 0.08 1.97 7.35 -2.39 -0.02 1.95 16 38 H 0.41 9.65 8.34 -92.70 -0.77 8.88 16 39 H 0.27 0.47 8.06 -2.91 -0.02 0.44 16 40 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.08 2.43 7.64 -2.39 -0.02 2.41 16 42 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.06 1.15 8.08 -2.39 -0.02 1.13 16 44 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.05 1.99 8.07 -2.39 -0.02 1.97 16 47 H 0.01 0.73 7.96 -2.39 -0.02 0.72 16 Total: -1.00 -78.14 372.07 2.01 -76.13 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.21 Total: 15.16 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 5.22 Total: 9.50 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -3.63 Total: -112.31 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -1.81 Total: -38.20 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -78.14 2.01 -76.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034326947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.059 kcal (2) G-P(sol) polarization free energy of solvation -78.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds