Wall clock time and date at job start Tue Mar 31 2020 21:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99994 * 2 1 4 4 H 1.48503 * 109.47079 * 269.99812 * 3 2 1 5 5 H 1.48501 * 109.47260 * 29.99675 * 3 2 1 6 6 H 1.48501 * 109.47164 * 150.00030 * 3 2 1 7 7 C 1.38810 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00210 * 196.91253 * 7 2 1 9 9 N 1.36941 * 120.00206 * 16.90325 * 7 2 1 10 10 C 1.47153 * 120.98006 * 26.26671 * 9 7 2 11 11 C 1.53296 * 108.38477 * 129.44174 * 10 9 7 12 12 O 1.42955 * 109.26253 * 52.27792 * 11 10 9 13 13 C 1.42955 * 114.16952 * 297.49832 * 12 11 10 14 14 H 1.09000 * 109.51719 * 302.55243 * 13 12 11 15 15 C 1.53007 * 109.51272 * 182.44760 * 13 12 11 16 16 N 1.46499 * 109.46732 * 65.10395 * 15 13 12 17 17 C 1.34782 * 119.99935 * 180.02562 * 16 15 13 18 18 O 1.21694 * 119.99737 * 359.97438 * 17 16 15 19 19 C 1.46659 * 119.99843 * 180.02562 * 17 16 15 20 20 C 1.36771 * 125.94999 * 180.02562 * 19 17 16 21 21 C 1.39609 * 106.54339 * 180.02562 * 20 19 17 22 22 C 1.35624 * 107.41590 * 0.02562 * 21 20 19 23 23 O 1.33499 * 108.59583 * 359.94204 * 22 21 20 24 24 C 1.50998 * 123.80772 * 179.87557 * 22 21 20 25 25 C 1.53328 * 108.42063 * 343.29327 * 24 22 21 26 26 C 1.53109 * 109.55754 * 50.15996 * 25 24 22 27 27 C 1.50693 * 128.16281 * 180.10772 * 21 20 19 28 28 C 1.47145 * 120.98572 * 206.24285 * 9 7 2 29 29 H 0.96997 * 120.00034 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.68498 * 249.16827 * 10 9 7 31 31 H 1.09004 * 109.68149 * 9.68129 * 10 9 7 32 32 H 1.08997 * 109.50824 * 172.22697 * 11 10 9 33 33 H 1.09000 * 109.51066 * 292.37655 * 11 10 9 34 34 H 1.09000 * 109.47082 * 305.10671 * 15 13 12 35 35 H 1.08997 * 109.47428 * 185.10186 * 15 13 12 36 36 H 0.97001 * 120.00270 * 0.02562 * 16 15 13 37 37 H 1.07995 * 126.74023 * 359.94419 * 20 19 17 38 38 H 1.08998 * 109.68146 * 223.55615 * 24 22 21 39 39 H 1.09005 * 109.69856 * 103.03684 * 24 22 21 40 40 H 1.09002 * 109.45168 * 290.13239 * 25 24 22 41 41 H 1.08997 * 109.44347 * 170.18097 * 25 24 22 42 42 H 1.09001 * 109.47427 * 169.78673 * 26 25 24 43 43 H 1.08999 * 109.48095 * 49.76660 * 26 25 24 44 44 H 1.09000 * 109.68467 * 43.78987 * 27 21 20 45 45 H 1.09003 * 109.68517 * 283.26900 * 27 21 20 46 46 H 1.08998 * 109.68237 * 110.83278 * 28 9 7 47 47 H 1.09006 * 109.71448 * 350.29803 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2225 0.2716 9 7 1.3700 -2.3623 -0.3459 10 6 0.1978 -2.3447 -1.2353 11 6 0.4256 -3.3659 -2.3556 12 8 0.7669 -4.6292 -1.7801 13 6 1.9822 -4.6204 -1.0274 14 1 2.8020 -4.2867 -1.6635 15 6 2.2755 -6.0315 -0.5137 16 7 2.5323 -6.9208 -1.6492 17 6 2.8150 -8.2213 -1.4361 18 8 2.8572 -8.6566 -0.3005 19 6 3.0726 -9.1115 -2.5728 20 6 3.3690 -10.4446 -2.4976 21 6 3.5359 -10.8894 -3.8104 22 6 3.3384 -9.8253 -4.6277 23 8 3.0588 -8.7576 -3.8766 24 6 3.4332 -9.8932 -6.1332 25 6 4.1737 -11.1805 -6.5145 26 6 3.5444 -12.3695 -5.7833 27 6 3.8708 -12.2791 -4.2872 28 6 1.8341 -3.6634 0.1610 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6954 -2.6122 -0.6708 31 1 0.0770 -1.3497 -1.6637 32 1 -0.4853 -3.4686 -2.9453 33 1 1.2392 -3.0272 -2.9971 34 1 1.4173 -6.3990 0.0488 35 1 3.1515 -6.0075 0.1344 36 1 2.4990 -6.5738 -2.5544 37 1 3.4580 -11.0369 -1.5990 38 1 3.9835 -9.0292 -6.5057 39 1 2.4320 -9.9044 -6.5643 40 1 5.2225 -11.0935 -6.2308 41 1 4.1004 -11.3360 -7.5908 42 1 3.9462 -13.2987 -6.1875 43 1 2.4634 -12.3504 -5.9215 44 1 3.2768 -13.0091 -3.7372 45 1 4.9314 -12.4756 -4.1302 46 1 1.1057 -4.0637 0.8661 47 1 2.7971 -3.5425 0.6571 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035390887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:21 Heat of formation + Delta-G solvation = -55.423401 kcal Electronic energy + Delta-G solvation = -28418.052794 eV Core-core repulsion = 24374.621632 eV Total energy + Delta-G solvation = -4043.431162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.04654 -39.57829 -38.42401 -37.50855 -35.01880 -34.33056 -33.31005 -31.67133 -30.86552 -30.53633 -29.50907 -27.54959 -25.83192 -24.25915 -23.22909 -22.94888 -22.17894 -21.64278 -20.87592 -19.84889 -19.11851 -18.01274 -16.94244 -16.80581 -16.27412 -16.04514 -15.90820 -15.16728 -15.00331 -14.68919 -14.38599 -14.35739 -14.26358 -13.92749 -13.79113 -13.33819 -13.18033 -13.11476 -13.09144 -12.85628 -12.75915 -12.60407 -12.37976 -11.59526 -11.36756 -11.32423 -11.14655 -10.99739 -10.88757 -10.75978 -10.45102 -10.33373 -10.26529 -10.00288 -9.90619 -9.68870 -9.13542 -9.08990 -8.57028 -8.52800 -6.78752 -5.86795 -3.30780 0.89877 2.07673 2.37553 3.11689 3.15689 3.32871 3.39861 3.41261 4.17734 4.22249 4.33015 4.37458 4.40871 4.47584 4.69306 4.84097 4.99700 5.03718 5.06817 5.10090 5.30361 5.32555 5.37716 5.44420 5.45573 5.48489 5.51620 5.64053 5.72425 5.76417 5.77294 5.81655 5.83373 5.99672 6.12230 6.20987 6.24158 6.34411 6.40919 6.45992 6.70418 6.72823 7.07636 7.46104 7.49395 7.68364 7.82808 8.05977 8.30599 9.08601 9.71194 10.27951 11.21301 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.002087 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.243625 B =13416.263989 C =13894.051851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.064 3.936 14 H 0.059 0.941 15 C 0.129 3.871 16 N -0.708 5.708 17 C 0.601 3.399 18 O -0.526 6.526 19 C -0.077 4.077 20 C -0.112 4.112 21 C -0.192 4.192 22 C 0.016 3.984 23 O -0.155 6.155 24 C -0.041 4.041 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.050 4.050 28 C 0.122 3.878 29 H 0.255 0.745 30 H 0.029 0.971 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.408 0.592 37 H 0.160 0.840 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.031 0.969 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.162 -22.901 -13.941 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.004 3.996 14 H 0.077 0.923 15 C 0.006 3.994 16 N -0.358 5.358 17 C 0.386 3.614 18 O -0.404 6.404 19 C -0.129 4.129 20 C -0.133 4.133 21 C -0.194 4.194 22 C -0.037 4.037 23 O -0.050 6.050 24 C -0.078 4.078 25 C -0.154 4.154 26 C -0.161 4.161 27 C -0.087 4.087 28 C -0.005 4.005 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.243 0.757 37 H 0.177 0.823 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.049 0.951 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.897 -22.859 -13.201 27.283 hybrid contribution 0.424 1.319 -0.237 1.406 sum 7.321 -21.540 -13.439 26.423 Atomic orbital electron populations 1.70036 1.05270 1.25699 1.53654 1.25059 0.95372 0.98525 1.00742 0.86225 0.79081 0.83357 0.77721 1.21375 1.21661 1.20352 1.19211 0.92658 0.84451 1.42164 0.91281 1.44067 1.33593 1.00988 1.53112 1.21453 0.89146 0.98328 0.89739 1.23328 0.99039 0.84830 0.96606 1.87792 1.41225 1.32610 1.69275 1.22812 0.87660 0.93662 0.95423 0.92266 1.21523 1.01973 0.87876 0.88058 1.45879 1.69882 1.08512 1.11506 1.16531 0.77454 0.81363 0.86003 1.90878 1.53108 1.75543 1.20905 1.22154 1.13598 0.95588 0.81546 1.21560 1.00346 0.93161 0.98202 1.20147 1.09612 0.97225 0.92376 1.22740 1.01923 0.84483 0.94506 1.83912 1.68417 1.36196 1.16488 1.20342 1.02662 0.99913 0.84896 1.21598 1.00011 0.93102 1.00654 1.21652 1.01412 0.98315 0.94683 1.20091 1.01603 0.91474 0.95510 1.21438 0.99035 0.87194 0.92860 0.93469 0.95318 0.88732 0.90013 0.94098 0.90215 0.89689 0.75709 0.82278 0.89295 0.89054 0.91076 0.90269 0.90984 0.91382 0.90517 0.90630 0.95122 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 11.14 55.49 0.62 -25.26 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 3 Si 0.91 21.37 29.59 -169.99 -5.03 16.35 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 7 C -0.26 -6.91 9.65 -15.06 -0.15 -7.06 16 8 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 9 N -0.59 -14.80 3.05 -171.83 -0.52 -15.32 16 10 C 0.14 3.30 5.45 -3.53 -0.02 3.28 16 11 C 0.04 0.76 6.98 37.31 0.26 1.02 16 12 O -0.39 -7.38 10.33 -35.23 -0.36 -7.74 16 13 C 0.06 1.13 2.81 -26.57 -0.07 1.06 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 15 C 0.13 1.98 5.34 -4.04 -0.02 1.96 16 16 N -0.71 -10.20 5.50 -61.62 -0.34 -10.54 16 17 C 0.60 9.15 7.79 -12.86 -0.10 9.05 16 18 O -0.53 -9.36 16.86 5.19 0.09 -9.27 16 19 C -0.08 -1.03 7.14 -36.71 -0.26 -1.30 16 20 C -0.11 -1.34 10.60 -39.60 -0.42 -1.75 16 21 C -0.19 -1.92 5.93 -105.05 -0.62 -2.54 16 22 C 0.02 0.17 7.22 -35.10 -0.25 -0.09 16 23 O -0.15 -1.91 10.39 5.55 0.06 -1.85 16 24 C -0.04 -0.26 6.30 -27.57 -0.17 -0.44 16 25 C -0.12 -0.56 5.89 -26.51 -0.16 -0.71 16 26 C -0.12 -0.63 5.91 -26.47 -0.16 -0.78 16 27 C -0.05 -0.34 6.28 -27.68 -0.17 -0.51 16 28 C 0.12 2.53 6.02 -3.54 -0.02 2.51 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 2.46 6.14 -51.93 -0.32 2.14 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.41 5.43 8.23 -40.82 -0.34 5.10 16 37 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.36 8.11 -51.93 -0.42 -0.07 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 1.28 7.96 -51.93 -0.41 0.86 16 LS Contribution 381.10 15.07 5.74 5.74 Total: -1.00 -32.07 381.10 -9.55 -41.63 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.38 Total: 2.61 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -2.43 Total: 3.66 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.24 Total: -51.12 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.22 Total: -18.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.07 -9.55 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035390887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.796 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds