Wall clock time and date at job start Tue Mar 31 2020 21:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99994 * 2 1 4 4 H 1.48503 * 109.47079 * 269.99812 * 3 2 1 5 5 H 1.48501 * 109.47260 * 29.99675 * 3 2 1 6 6 H 1.48501 * 109.47164 * 150.00030 * 3 2 1 7 7 C 1.38810 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00210 * 196.91253 * 7 2 1 9 9 N 1.36941 * 120.00206 * 16.90325 * 7 2 1 10 10 C 1.47153 * 120.98006 * 26.26671 * 9 7 2 11 11 C 1.53296 * 108.38477 * 129.44174 * 10 9 7 12 12 O 1.42955 * 109.26253 * 52.27792 * 11 10 9 13 13 C 1.42955 * 114.16952 * 297.49832 * 12 11 10 14 14 H 1.09000 * 109.51719 * 302.55243 * 13 12 11 15 15 C 1.53007 * 109.51272 * 182.44760 * 13 12 11 16 16 N 1.46499 * 109.46732 * 65.10395 * 15 13 12 17 17 C 1.34782 * 119.99935 * 180.02562 * 16 15 13 18 18 O 1.21694 * 119.99737 * 359.97438 * 17 16 15 19 19 C 1.46659 * 119.99843 * 180.02562 * 17 16 15 20 20 C 1.36771 * 125.94999 * 180.02562 * 19 17 16 21 21 C 1.39609 * 106.54339 * 180.02562 * 20 19 17 22 22 C 1.35624 * 107.41590 * 0.02562 * 21 20 19 23 23 O 1.33499 * 108.59583 * 359.94204 * 22 21 20 24 24 C 1.50998 * 123.80772 * 179.87557 * 22 21 20 25 25 C 1.53328 * 108.42063 * 343.29327 * 24 22 21 26 26 C 1.53109 * 109.55754 * 50.15996 * 25 24 22 27 27 C 1.50693 * 128.16281 * 180.10772 * 21 20 19 28 28 C 1.47145 * 120.98572 * 206.24285 * 9 7 2 29 29 H 0.96997 * 120.00034 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.68498 * 249.16827 * 10 9 7 31 31 H 1.09004 * 109.68149 * 9.68129 * 10 9 7 32 32 H 1.08997 * 109.50824 * 172.22697 * 11 10 9 33 33 H 1.09000 * 109.51066 * 292.37655 * 11 10 9 34 34 H 1.09000 * 109.47082 * 305.10671 * 15 13 12 35 35 H 1.08997 * 109.47428 * 185.10186 * 15 13 12 36 36 H 0.97001 * 120.00270 * 0.02562 * 16 15 13 37 37 H 1.07995 * 126.74023 * 359.94419 * 20 19 17 38 38 H 1.08998 * 109.68146 * 223.55615 * 24 22 21 39 39 H 1.09005 * 109.69856 * 103.03684 * 24 22 21 40 40 H 1.09002 * 109.45168 * 290.13239 * 25 24 22 41 41 H 1.08997 * 109.44347 * 170.18097 * 25 24 22 42 42 H 1.09001 * 109.47427 * 169.78673 * 26 25 24 43 43 H 1.08999 * 109.48095 * 49.76660 * 26 25 24 44 44 H 1.09000 * 109.68467 * 43.78987 * 27 21 20 45 45 H 1.09003 * 109.68517 * 283.26900 * 27 21 20 46 46 H 1.08998 * 109.68237 * 110.83278 * 28 9 7 47 47 H 1.09006 * 109.71448 * 350.29803 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2225 0.2716 9 7 1.3700 -2.3623 -0.3459 10 6 0.1978 -2.3447 -1.2353 11 6 0.4256 -3.3659 -2.3556 12 8 0.7669 -4.6292 -1.7801 13 6 1.9822 -4.6204 -1.0274 14 1 2.8020 -4.2867 -1.6635 15 6 2.2755 -6.0315 -0.5137 16 7 2.5323 -6.9208 -1.6492 17 6 2.8150 -8.2213 -1.4361 18 8 2.8572 -8.6566 -0.3005 19 6 3.0726 -9.1115 -2.5728 20 6 3.3690 -10.4446 -2.4976 21 6 3.5359 -10.8894 -3.8104 22 6 3.3384 -9.8253 -4.6277 23 8 3.0588 -8.7576 -3.8766 24 6 3.4332 -9.8932 -6.1332 25 6 4.1737 -11.1805 -6.5145 26 6 3.5444 -12.3695 -5.7833 27 6 3.8708 -12.2791 -4.2872 28 6 1.8341 -3.6634 0.1610 29 1 -0.4850 0.8400 -0.0004 30 1 -0.6954 -2.6122 -0.6708 31 1 0.0770 -1.3497 -1.6637 32 1 -0.4853 -3.4686 -2.9453 33 1 1.2392 -3.0272 -2.9971 34 1 1.4173 -6.3990 0.0488 35 1 3.1515 -6.0075 0.1344 36 1 2.4990 -6.5738 -2.5544 37 1 3.4580 -11.0369 -1.5990 38 1 3.9835 -9.0292 -6.5057 39 1 2.4320 -9.9044 -6.5643 40 1 5.2225 -11.0935 -6.2308 41 1 4.1004 -11.3360 -7.5908 42 1 3.9462 -13.2987 -6.1875 43 1 2.4634 -12.3504 -5.9215 44 1 3.2768 -13.0091 -3.7372 45 1 4.9314 -12.4756 -4.1302 46 1 1.1057 -4.0637 0.8661 47 1 2.7971 -3.5425 0.6571 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035390887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:20 Heat of formation + Delta-G solvation = -75.896596 kcal Electronic energy + Delta-G solvation = -28418.940578 eV Core-core repulsion = 24374.621632 eV Total energy + Delta-G solvation = -4044.318946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -43.89907 -40.85063 -39.95560 -38.05780 -36.58818 -35.91025 -34.08932 -33.42169 -32.51456 -31.13953 -30.44149 -29.19015 -27.34579 -25.29203 -24.86428 -23.80488 -23.25110 -22.73132 -21.93675 -21.37038 -20.03383 -19.04439 -18.78107 -17.74464 -17.51687 -17.26247 -17.02779 -16.81834 -16.19464 -16.02139 -15.62504 -15.50037 -15.46683 -15.04296 -14.74932 -14.66540 -14.52587 -14.48814 -14.05378 -13.78332 -13.76069 -13.51129 -13.24943 -13.07333 -13.02809 -12.71698 -12.55501 -12.19036 -12.10104 -11.90503 -11.76407 -11.73651 -11.59555 -11.44969 -11.32722 -10.83007 -10.75202 -10.57237 -10.33387 -9.36205 -8.78252 -7.92881 -5.40613 -0.06282 1.25567 1.46215 1.47064 1.48859 1.56551 2.01653 2.05512 2.46744 2.73312 3.21959 3.44473 3.47195 3.71355 3.76648 3.91306 4.00672 4.01587 4.12426 4.17022 4.22424 4.38858 4.44013 4.48112 4.49138 4.57013 4.60239 4.68345 4.70183 4.71853 4.86061 4.89060 4.93384 5.01835 5.03308 5.08829 5.16177 5.21151 5.21740 5.23183 5.45707 5.52336 5.53319 5.59351 5.82964 6.22290 6.29944 6.34635 6.90355 7.04091 7.71922 8.25681 9.13260 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024486 B = 0.002087 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.243625 B =13416.263989 C =13894.051851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.973 3.027 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.266 4.266 8 H 0.074 0.926 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.054 3.946 12 O -0.391 6.391 13 C 0.078 3.922 14 H 0.069 0.931 15 C 0.139 3.861 16 N -0.702 5.702 17 C 0.602 3.398 18 O -0.560 6.560 19 C -0.109 4.109 20 C -0.111 4.111 21 C -0.201 4.201 22 C 0.019 3.981 23 O -0.165 6.165 24 C -0.044 4.044 25 C -0.113 4.113 26 C -0.122 4.122 27 C -0.051 4.051 28 C 0.117 3.883 29 H 0.252 0.748 30 H 0.000 1.000 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.414 0.586 37 H 0.162 0.838 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.020 0.980 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.657 -24.406 -16.276 30.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.801 3.199 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.396 4.396 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.017 3.983 11 C -0.024 4.024 12 O -0.311 6.311 13 C 0.019 3.981 14 H 0.087 0.913 15 C 0.015 3.985 16 N -0.352 5.352 17 C 0.390 3.610 18 O -0.441 6.441 19 C -0.160 4.160 20 C -0.132 4.132 21 C -0.202 4.202 22 C -0.033 4.033 23 O -0.061 6.061 24 C -0.081 4.081 25 C -0.151 4.151 26 C -0.159 4.159 27 C -0.088 4.088 28 C -0.009 4.009 29 H 0.061 0.939 30 H 0.018 0.982 31 H 0.087 0.913 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.250 0.750 37 H 0.180 0.820 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.038 0.962 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.410 -24.388 -15.557 30.125 hybrid contribution -0.037 1.694 0.472 1.759 sum 8.373 -22.694 -15.086 28.508 Atomic orbital electron populations 1.70193 1.06733 1.26101 1.55129 1.25856 0.96139 1.01706 1.01000 0.85183 0.77991 0.79053 0.77696 1.20870 1.22263 1.19246 1.19563 0.93047 0.85500 1.41465 0.90869 1.44345 1.33672 1.01906 1.53804 1.21317 0.87990 0.98380 0.90588 1.23169 1.00717 0.83565 0.94933 1.87806 1.41876 1.32140 1.69254 1.22660 0.87451 0.94055 0.93958 0.91296 1.21339 1.02107 0.86698 0.88320 1.45756 1.69678 1.08302 1.11465 1.16697 0.76677 0.81431 0.86174 1.90847 1.54780 1.76140 1.22339 1.21818 1.16650 0.95793 0.81777 1.21826 0.99135 0.92787 0.99442 1.20539 1.09377 0.98903 0.91405 1.23626 0.99796 0.83820 0.96106 1.83891 1.68840 1.37232 1.16111 1.20632 1.03897 1.01379 0.82149 1.21639 0.99537 0.91892 1.01991 1.21674 1.01472 0.99438 0.93315 1.20226 1.02174 0.89507 0.96904 1.21590 0.99001 0.86185 0.94130 0.93912 0.98229 0.91315 0.87353 0.93103 0.91217 0.88529 0.74956 0.81992 0.88280 0.87741 0.91190 0.87941 0.89059 0.91574 0.90088 0.89821 0.96183 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.01 11.14 21.65 0.24 -54.76 16 2 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 3 Si 0.97 44.21 29.59 68.60 2.03 46.24 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.27 -14.46 9.65 84.03 0.81 -13.65 16 8 H 0.07 3.83 7.88 -2.91 -0.02 3.81 16 9 N -0.61 -30.84 3.05 -697.54 -2.13 -32.97 16 10 C 0.14 6.92 5.45 86.35 0.47 7.39 16 11 C 0.05 2.01 6.98 72.08 0.50 2.52 16 12 O -0.39 -14.38 10.33 -148.98 -1.54 -15.92 16 13 C 0.08 2.68 2.81 30.70 0.09 2.76 16 14 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 15 C 0.14 4.19 5.34 86.38 0.46 4.66 16 16 N -0.70 -19.83 5.50 -467.08 -2.57 -22.40 16 17 C 0.60 18.40 7.79 86.44 0.67 19.08 16 18 O -0.56 -20.23 16.86 -4.33 -0.07 -20.30 16 19 C -0.11 -2.91 7.14 24.13 0.17 -2.74 16 20 C -0.11 -2.61 10.60 22.26 0.24 -2.37 16 21 C -0.20 -3.73 5.93 -20.14 -0.12 -3.85 16 22 C 0.02 0.36 7.22 25.17 0.18 0.54 16 23 O -0.16 -3.93 10.39 -3.05 -0.03 -3.96 16 24 C -0.04 -0.44 6.30 30.05 0.19 -0.25 16 25 C -0.11 -0.70 5.89 30.74 0.18 -0.52 16 26 C -0.12 -0.86 5.91 30.76 0.18 -0.68 16 27 C -0.05 -0.58 6.28 29.98 0.19 -0.39 16 28 C 0.12 4.86 6.02 86.36 0.52 5.38 16 29 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.07 3.67 6.14 -2.39 -0.01 3.66 16 32 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.10 2.71 8.14 -2.39 -0.02 2.70 16 36 H 0.41 10.62 8.23 -92.71 -0.76 9.85 16 37 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 39 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.07 0.48 8.11 -2.39 -0.02 0.46 16 41 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.07 0.52 8.11 -2.39 -0.02 0.50 16 44 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.07 2.91 7.96 -2.38 -0.02 2.90 16 Total: -1.00 -70.24 381.10 1.30 -68.94 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.22 Total: 19.69 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 5.16 Total: 15.44 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -4.46 Total: -110.13 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.64 Total: -40.18 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -70.24 1.30 -68.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035390887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.961 kcal (2) G-P(sol) polarization free energy of solvation -70.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds