Wall clock time and date at job start Tue Mar 31 2020 21:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00003 * 2 1 4 4 H 1.48506 * 109.47115 * 268.93042 * 3 2 1 5 5 H 1.48500 * 109.47472 * 28.93346 * 3 2 1 6 6 H 1.48499 * 109.47069 * 148.93363 * 3 2 1 7 7 C 1.38810 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00195 * 343.37036 * 7 2 1 9 9 N 1.36932 * 120.00224 * 163.37030 * 7 2 1 10 10 C 1.47154 * 120.98113 * 329.41012 * 9 7 2 11 11 C 1.53296 * 108.38344 * 230.55569 * 10 9 7 12 12 O 1.42963 * 109.22547 * 307.69510 * 11 10 9 13 13 C 1.42961 * 114.16175 * 62.58308 * 12 11 10 14 14 C 1.47155 * 120.98711 * 149.43137 * 9 7 2 15 15 H 1.08994 * 109.68485 * 249.20805 * 14 9 7 16 16 C 1.53006 * 109.67579 * 9.72015 * 14 9 7 17 17 N 1.46498 * 109.47153 * 299.25088 * 16 14 9 18 18 C 1.34779 * 119.99904 * 180.02562 * 17 16 14 19 19 O 1.21697 * 119.99906 * 359.97438 * 18 17 16 20 20 C 1.46660 * 119.99815 * 180.02562 * 18 17 16 21 21 C 1.36774 * 125.95113 * 179.97438 * 20 18 17 22 22 C 1.39653 * 106.52697 * 180.02562 * 21 20 18 23 23 C 1.35569 * 107.42065 * 0.03903 * 22 21 20 24 24 O 1.33502 * 108.60782 * 359.66191 * 23 22 21 25 25 C 1.51000 * 123.80013 * 179.90459 * 23 22 21 26 26 C 1.53321 * 108.41162 * 343.27842 * 25 23 22 27 27 C 1.53107 * 109.55939 * 50.16917 * 26 25 23 28 28 C 1.50698 * 128.12157 * 180.14418 * 22 21 20 29 29 H 0.97001 * 119.99956 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.68094 * 350.27740 * 10 9 7 31 31 H 1.09004 * 109.68250 * 110.79671 * 10 9 7 32 32 H 1.08998 * 109.51767 * 67.62343 * 11 10 9 33 33 H 1.09006 * 109.51476 * 187.72386 * 11 10 9 34 34 H 1.09009 * 109.51020 * 177.49817 * 13 12 11 35 35 H 1.08996 * 109.51460 * 57.34420 * 13 12 11 36 36 H 1.08999 * 109.47024 * 59.25933 * 16 14 9 37 37 H 1.09000 * 109.46799 * 179.25502 * 16 14 9 38 38 H 0.97000 * 119.99982 * 0.02562 * 17 16 14 39 39 H 1.07998 * 126.73908 * 359.97259 * 21 20 18 40 40 H 1.09001 * 109.67124 * 103.00665 * 25 23 22 41 41 H 1.08995 * 109.67519 * 223.54638 * 25 23 22 42 42 H 1.09004 * 109.45406 * 170.19604 * 26 25 23 43 43 H 1.08998 * 109.45882 * 290.16042 * 26 25 23 44 44 H 1.09009 * 109.47717 * 49.75508 * 27 26 25 45 45 H 1.09001 * 109.48001 * 169.76360 * 27 26 25 46 46 H 1.09005 * 109.68254 * 283.24290 * 28 22 21 47 47 H 1.08999 * 109.68581 * 43.80023 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5203 2.0334 -1.3999 5 1 1.4365 2.6591 0.6773 6 1 3.5362 1.4468 0.7225 7 6 2.0102 -1.2021 0.0005 8 1 1.5041 -2.1178 0.2686 9 7 3.3365 -1.2271 -0.3388 10 6 3.8915 -0.2585 -1.2976 11 6 4.6794 -1.0297 -2.3627 12 8 5.6181 -1.8950 -1.7193 13 6 5.0195 -2.8990 -0.8962 14 6 4.2491 -2.2236 0.2440 15 1 4.9486 -1.7305 0.9189 16 6 3.4432 -3.2723 1.0135 17 7 2.7029 -2.6209 2.0969 18 6 1.9192 -3.3533 2.9130 19 8 1.8263 -4.5557 2.7495 20 6 1.1776 -2.7011 3.9972 21 6 0.3511 -3.3229 4.8921 22 6 -0.1390 -2.3265 5.7391 23 6 0.3986 -1.1495 5.3346 24 8 1.1961 -1.3822 4.2895 25 6 0.1125 0.1765 5.9978 26 6 -1.1448 0.0245 6.8620 27 6 -1.0041 -1.2079 7.7594 28 6 -1.0870 -2.4764 6.9009 29 1 -0.4850 0.8401 -0.0004 30 1 3.0807 0.2958 -1.7703 31 1 4.5550 0.4331 -0.7783 32 1 3.9920 -1.6224 -2.9661 33 1 5.2115 -0.3258 -3.0027 34 1 5.7970 -3.5402 -0.4805 35 1 4.3333 -3.4986 -1.4942 36 1 2.7422 -3.7604 0.3365 37 1 4.1211 -4.0158 1.4326 38 1 2.7767 -1.6625 2.2269 39 1 0.1216 -4.3774 4.9348 40 1 0.9567 0.4627 6.6252 41 1 -0.0550 0.9388 5.2369 42 1 -1.2690 0.9126 7.4816 43 1 -2.0161 -0.0934 6.2177 44 1 -0.0418 -1.1773 8.2707 45 1 -1.8071 -1.2145 8.4964 46 1 -2.1043 -2.6036 6.5306 47 1 -0.8021 -3.3428 7.4978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050953141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:34 Heat of formation + Delta-G solvation = -42.366098 kcal Electronic energy + Delta-G solvation = -30050.237753 eV Core-core repulsion = 26007.372798 eV Total energy + Delta-G solvation = -4042.864955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.53017 -39.32479 -38.43119 -37.11086 -35.51670 -33.73760 -32.83102 -31.79914 -31.10499 -30.16560 -29.12695 -27.54580 -25.86373 -23.91289 -23.43075 -22.64053 -22.13568 -21.46202 -20.31373 -19.91471 -18.75638 -17.61112 -16.71562 -16.32643 -16.09252 -15.86005 -15.70169 -15.14220 -15.00161 -14.70808 -14.48304 -14.01530 -14.00518 -13.82355 -13.77400 -13.47949 -13.18008 -12.72713 -12.63542 -12.57707 -12.43468 -12.26141 -12.11948 -11.88742 -11.61017 -11.16071 -11.01602 -10.97481 -10.80248 -10.62425 -10.56677 -10.35767 -9.89292 -9.79661 -9.64420 -9.42425 -9.32760 -8.72291 -8.44804 -8.00098 -7.04164 -6.05052 -3.48990 1.44018 2.54853 2.91916 3.20777 3.38177 3.39525 3.61866 3.78670 4.27237 4.40308 4.60180 4.62973 4.72632 4.73876 4.90772 5.10265 5.20419 5.29231 5.35610 5.39532 5.42688 5.46933 5.53349 5.63316 5.67907 5.76133 5.77749 5.82603 5.86083 5.87730 5.88945 5.96711 6.05034 6.09183 6.14914 6.16411 6.19490 6.27719 6.33126 6.48694 6.67874 6.68933 6.94597 7.24082 7.57632 7.79132 8.11798 8.22983 8.66426 8.77146 9.56899 9.93202 11.08916 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.003907 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.295110 B = 7164.004537 C = 8465.585440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.033 3.967 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.271 4.271 8 H 0.096 0.904 9 N -0.607 5.607 10 C 0.091 3.909 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.055 3.945 14 C 0.127 3.873 15 H 0.047 0.953 16 C 0.135 3.865 17 N -0.681 5.681 18 C 0.599 3.401 19 O -0.544 6.544 20 C -0.060 4.060 21 C -0.124 4.124 22 C -0.195 4.195 23 C 0.014 3.986 24 O -0.146 6.146 25 C -0.041 4.041 26 C -0.116 4.116 27 C -0.121 4.121 28 C -0.047 4.047 29 H 0.264 0.736 30 H 0.082 0.918 31 H 0.034 0.966 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.417 0.583 39 H 0.156 0.844 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.215 -0.987 11.270 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.168 4.168 3 Si 0.712 3.288 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.398 4.398 8 H 0.114 0.886 9 N -0.334 5.334 10 C -0.034 4.034 11 C -0.032 4.032 12 O -0.306 6.306 13 C -0.024 4.024 14 C 0.021 3.979 15 H 0.065 0.935 16 C 0.011 3.989 17 N -0.331 5.331 18 C 0.385 3.615 19 O -0.425 6.425 20 C -0.112 4.112 21 C -0.144 4.144 22 C -0.197 4.197 23 C -0.039 4.039 24 O -0.040 6.040 25 C -0.078 4.078 26 C -0.153 4.153 27 C -0.158 4.158 28 C -0.084 4.084 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.255 0.745 39 H 0.173 0.827 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.376 -1.486 10.946 11.299 hybrid contribution -0.013 1.447 -0.118 1.452 sum 2.363 -0.039 10.829 11.084 Atomic orbital electron populations 1.69796 1.05655 1.26601 1.51965 1.25327 0.95148 0.97443 0.98841 0.87017 0.79702 0.84712 0.77384 1.21476 1.23109 1.19591 1.18991 0.82642 0.94813 1.43392 0.88627 1.44433 1.06309 1.35464 1.47164 1.22059 0.97285 0.92789 0.91315 1.23068 0.92137 0.93160 0.94839 1.87827 1.33422 1.45663 1.63710 1.22905 0.97188 0.89960 0.92358 1.21460 0.92080 0.90804 0.93582 0.93545 1.21220 0.94735 0.94357 0.88579 1.45875 1.45049 1.12562 1.29632 1.16491 0.79048 0.85814 0.80156 1.90808 1.65808 1.13345 1.72546 1.22171 1.06553 0.80715 1.01756 1.21455 0.97723 1.00578 0.94679 1.20046 1.05257 0.92310 1.02047 1.22611 0.94660 0.97491 0.89152 1.83974 1.53387 1.26028 1.40642 1.20294 0.98942 0.90492 0.98085 1.21584 0.97152 0.98578 0.98002 1.21635 1.02290 0.94224 0.97694 1.20052 0.97413 0.98084 0.92885 0.92641 0.90016 0.94817 0.92974 0.89740 0.89294 0.92830 0.90734 0.91642 0.74499 0.82658 0.89464 0.89242 0.90551 0.90999 0.91589 0.91265 0.90798 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.97 55.49 0.78 -25.54 16 2 C 0.03 0.89 5.29 -17.43 -0.09 0.80 16 3 Si 0.88 21.28 24.28 -169.99 -4.13 17.15 16 4 H -0.29 -6.73 6.54 56.52 0.37 -6.36 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.27 -6.43 6.64 56.52 0.38 -6.06 16 7 C -0.27 -6.94 7.54 -15.06 -0.11 -7.05 16 8 H 0.10 2.69 5.98 -52.48 -0.31 2.38 16 9 N -0.61 -13.44 2.78 -164.30 -0.46 -13.89 16 10 C 0.09 1.89 4.38 -3.53 -0.02 1.87 16 11 C 0.05 0.81 6.98 37.31 0.26 1.07 16 12 O -0.39 -6.91 10.74 -35.23 -0.38 -7.29 16 13 C 0.05 0.90 6.29 37.31 0.23 1.13 16 14 C 0.13 2.36 3.21 -67.42 -0.22 2.15 16 15 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 16 C 0.14 2.49 4.44 -4.04 -0.02 2.47 16 17 N -0.68 -13.67 3.76 -61.62 -0.23 -13.90 16 18 C 0.60 12.41 7.79 -12.86 -0.10 12.31 16 19 O -0.54 -12.12 16.86 5.19 0.09 -12.03 16 20 C -0.06 -1.16 7.14 -36.71 -0.26 -1.42 16 21 C -0.12 -2.11 10.60 -39.58 -0.42 -2.53 16 22 C -0.20 -2.92 5.93 -105.05 -0.62 -3.54 16 23 C 0.01 0.22 7.22 -35.12 -0.25 -0.03 16 24 O -0.15 -2.78 10.39 5.54 0.06 -2.72 16 25 C -0.04 -0.49 6.30 -27.57 -0.17 -0.66 16 26 C -0.12 -1.09 5.89 -26.51 -0.16 -1.24 16 27 C -0.12 -1.07 5.91 -26.47 -0.16 -1.23 16 28 C -0.05 -0.52 6.28 -27.68 -0.17 -0.69 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.08 1.83 4.89 -51.93 -0.25 1.57 16 31 H 0.03 0.71 6.81 -51.93 -0.35 0.36 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.09 1.19 8.14 -51.92 -0.42 0.77 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.51 7.56 -51.93 -0.39 1.11 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.42 8.77 7.08 -40.82 -0.29 8.48 16 39 H 0.16 2.42 8.06 -52.49 -0.42 2.00 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 44 H 0.07 0.57 8.12 -51.92 -0.42 0.15 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 366.88 15.07 5.53 5.53 Total: -1.00 -31.64 366.88 -8.16 -39.80 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.14 Total: 9.48 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -2.28 Total: 3.42 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.09 Total: -53.34 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.23 Total: -22.04 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.13 Total: 17.15 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.64 -8.16 -39.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050953141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.563 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds