Wall clock time and date at job start Tue Mar 31 2020 21:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00003 * 2 1 4 4 H 1.48506 * 109.47115 * 268.93042 * 3 2 1 5 5 H 1.48500 * 109.47472 * 28.93346 * 3 2 1 6 6 H 1.48499 * 109.47069 * 148.93363 * 3 2 1 7 7 C 1.38810 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00195 * 343.37036 * 7 2 1 9 9 N 1.36932 * 120.00224 * 163.37030 * 7 2 1 10 10 C 1.47154 * 120.98113 * 329.41012 * 9 7 2 11 11 C 1.53296 * 108.38344 * 230.55569 * 10 9 7 12 12 O 1.42963 * 109.22547 * 307.69510 * 11 10 9 13 13 C 1.42961 * 114.16175 * 62.58308 * 12 11 10 14 14 C 1.47155 * 120.98711 * 149.43137 * 9 7 2 15 15 H 1.08994 * 109.68485 * 249.20805 * 14 9 7 16 16 C 1.53006 * 109.67579 * 9.72015 * 14 9 7 17 17 N 1.46498 * 109.47153 * 299.25088 * 16 14 9 18 18 C 1.34779 * 119.99904 * 180.02562 * 17 16 14 19 19 O 1.21697 * 119.99906 * 359.97438 * 18 17 16 20 20 C 1.46660 * 119.99815 * 180.02562 * 18 17 16 21 21 C 1.36774 * 125.95113 * 179.97438 * 20 18 17 22 22 C 1.39653 * 106.52697 * 180.02562 * 21 20 18 23 23 C 1.35569 * 107.42065 * 0.03903 * 22 21 20 24 24 O 1.33502 * 108.60782 * 359.66191 * 23 22 21 25 25 C 1.51000 * 123.80013 * 179.90459 * 23 22 21 26 26 C 1.53321 * 108.41162 * 343.27842 * 25 23 22 27 27 C 1.53107 * 109.55939 * 50.16917 * 26 25 23 28 28 C 1.50698 * 128.12157 * 180.14418 * 22 21 20 29 29 H 0.97001 * 119.99956 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.68094 * 350.27740 * 10 9 7 31 31 H 1.09004 * 109.68250 * 110.79671 * 10 9 7 32 32 H 1.08998 * 109.51767 * 67.62343 * 11 10 9 33 33 H 1.09006 * 109.51476 * 187.72386 * 11 10 9 34 34 H 1.09009 * 109.51020 * 177.49817 * 13 12 11 35 35 H 1.08996 * 109.51460 * 57.34420 * 13 12 11 36 36 H 1.08999 * 109.47024 * 59.25933 * 16 14 9 37 37 H 1.09000 * 109.46799 * 179.25502 * 16 14 9 38 38 H 0.97000 * 119.99982 * 0.02562 * 17 16 14 39 39 H 1.07998 * 126.73908 * 359.97259 * 21 20 18 40 40 H 1.09001 * 109.67124 * 103.00665 * 25 23 22 41 41 H 1.08995 * 109.67519 * 223.54638 * 25 23 22 42 42 H 1.09004 * 109.45406 * 170.19604 * 26 25 23 43 43 H 1.08998 * 109.45882 * 290.16042 * 26 25 23 44 44 H 1.09009 * 109.47717 * 49.75508 * 27 26 25 45 45 H 1.09001 * 109.48001 * 169.76360 * 27 26 25 46 46 H 1.09005 * 109.68254 * 283.24290 * 28 22 21 47 47 H 1.08999 * 109.68581 * 43.80023 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5203 2.0334 -1.3999 5 1 1.4365 2.6591 0.6773 6 1 3.5362 1.4468 0.7225 7 6 2.0102 -1.2021 0.0005 8 1 1.5041 -2.1178 0.2686 9 7 3.3365 -1.2271 -0.3388 10 6 3.8915 -0.2585 -1.2976 11 6 4.6794 -1.0297 -2.3627 12 8 5.6181 -1.8950 -1.7193 13 6 5.0195 -2.8990 -0.8962 14 6 4.2491 -2.2236 0.2440 15 1 4.9486 -1.7305 0.9189 16 6 3.4432 -3.2723 1.0135 17 7 2.7029 -2.6209 2.0969 18 6 1.9192 -3.3533 2.9130 19 8 1.8263 -4.5557 2.7495 20 6 1.1776 -2.7011 3.9972 21 6 0.3511 -3.3229 4.8921 22 6 -0.1390 -2.3265 5.7391 23 6 0.3986 -1.1495 5.3346 24 8 1.1961 -1.3822 4.2895 25 6 0.1125 0.1765 5.9978 26 6 -1.1448 0.0245 6.8620 27 6 -1.0041 -1.2079 7.7594 28 6 -1.0870 -2.4764 6.9009 29 1 -0.4850 0.8401 -0.0004 30 1 3.0807 0.2958 -1.7703 31 1 4.5550 0.4331 -0.7783 32 1 3.9920 -1.6224 -2.9661 33 1 5.2115 -0.3258 -3.0027 34 1 5.7970 -3.5402 -0.4805 35 1 4.3333 -3.4986 -1.4942 36 1 2.7422 -3.7604 0.3365 37 1 4.1211 -4.0158 1.4326 38 1 2.7767 -1.6625 2.2269 39 1 0.1216 -4.3774 4.9348 40 1 0.9567 0.4627 6.6252 41 1 -0.0550 0.9388 5.2369 42 1 -1.2690 0.9126 7.4816 43 1 -2.0161 -0.0934 6.2177 44 1 -0.0418 -1.1773 8.2707 45 1 -1.8071 -1.2145 8.4964 46 1 -2.1043 -2.6036 6.5306 47 1 -0.8021 -3.3428 7.4978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050953141.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:33 Heat of formation + Delta-G solvation = -63.910745 kcal Electronic energy + Delta-G solvation = -30051.171999 eV Core-core repulsion = 26007.372798 eV Total energy + Delta-G solvation = -4043.799201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.84793 -40.90331 -39.97130 -38.06049 -37.11378 -35.45231 -34.05636 -33.66516 -32.71127 -31.13369 -30.36782 -29.25064 -27.28772 -25.26765 -25.04156 -23.89798 -23.40675 -22.73456 -21.75028 -21.49425 -20.04482 -19.08445 -18.43570 -17.79534 -17.58871 -17.37933 -16.97888 -16.68430 -16.60975 -16.07147 -15.77096 -15.59166 -15.41348 -15.27614 -14.76096 -14.74473 -14.50220 -14.46574 -14.01320 -13.92625 -13.74436 -13.51834 -13.48740 -13.21864 -13.07646 -12.87125 -12.38509 -12.34446 -12.07760 -11.79160 -11.74335 -11.61979 -11.51608 -11.46098 -11.30213 -11.05336 -10.70339 -10.54344 -10.09088 -9.31242 -8.88819 -8.15201 -5.54960 0.01573 1.26295 1.29294 1.38546 1.45971 1.61281 2.09173 2.27427 2.38824 2.84934 3.01575 3.19480 3.52742 3.72739 3.79703 3.87289 3.97933 4.06072 4.14508 4.16787 4.20683 4.25459 4.37152 4.39335 4.45214 4.46780 4.55109 4.58505 4.65859 4.69296 4.70426 4.88180 4.90295 4.91591 4.92260 5.01238 5.09408 5.16334 5.18346 5.22467 5.37409 5.43577 5.55621 5.82620 5.91376 6.15435 6.18778 6.48989 6.81826 7.03881 7.54954 7.95449 9.02810 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014692 B = 0.003907 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.295110 B = 7164.004537 C = 8465.585440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.022 4.022 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.315 1.315 6 H -0.263 1.263 7 C -0.239 4.239 8 H 0.063 0.937 9 N -0.621 5.621 10 C 0.084 3.916 11 C 0.054 3.946 12 O -0.388 6.388 13 C 0.058 3.942 14 C 0.127 3.873 15 H 0.056 0.944 16 C 0.137 3.863 17 N -0.684 5.684 18 C 0.595 3.405 19 O -0.570 6.570 20 C -0.104 4.104 21 C -0.119 4.119 22 C -0.197 4.197 23 C 0.006 3.994 24 O -0.171 6.171 25 C -0.045 4.045 26 C -0.113 4.113 27 C -0.116 4.116 28 C -0.049 4.049 29 H 0.259 0.741 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.411 0.589 39 H 0.165 0.835 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.630 -0.402 12.674 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.218 4.218 3 Si 0.769 3.231 4 H -0.201 1.201 5 H -0.245 1.245 6 H -0.188 1.188 7 C -0.368 4.368 8 H 0.080 0.920 9 N -0.348 5.348 10 C -0.040 4.040 11 C -0.024 4.024 12 O -0.307 6.307 13 C -0.020 4.020 14 C 0.022 3.978 15 H 0.074 0.926 16 C 0.014 3.986 17 N -0.332 5.332 18 C 0.383 3.617 19 O -0.453 6.453 20 C -0.155 4.155 21 C -0.139 4.139 22 C -0.198 4.198 23 C -0.047 4.047 24 O -0.066 6.066 25 C -0.082 4.082 26 C -0.150 4.150 27 C -0.154 4.154 28 C -0.086 4.086 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.145 0.855 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.247 0.753 39 H 0.183 0.817 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.115 0.885 46 H 0.097 0.903 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.851 -0.915 12.331 12.951 hybrid contribution -0.459 1.189 -0.507 1.371 sum 3.392 0.274 11.825 12.305 Atomic orbital electron populations 1.69935 1.07364 1.26911 1.55351 1.25854 0.95570 1.00458 0.99903 0.86066 0.78376 0.80805 0.77845 1.20062 1.24461 1.18764 1.18749 0.84077 0.93297 1.40702 0.91974 1.44570 1.05628 1.36480 1.48138 1.22131 0.97069 0.92943 0.91901 1.23030 0.92196 0.93361 0.93843 1.87842 1.33394 1.45744 1.63686 1.22999 0.98052 0.89707 0.91232 1.21661 0.91559 0.90030 0.94598 0.92612 1.21288 0.94509 0.94813 0.88004 1.45903 1.45224 1.12147 1.29894 1.16718 0.78875 0.85688 0.80455 1.90763 1.66809 1.14177 1.73534 1.22076 1.08896 0.81457 1.03098 1.21795 0.96517 1.01492 0.94122 1.20540 1.05354 0.91137 1.02753 1.23628 0.93374 0.99703 0.87995 1.83937 1.54667 1.25910 1.42135 1.20607 1.01178 0.88091 0.98287 1.21639 0.95128 1.00360 0.97860 1.21651 1.03727 0.92427 0.97546 1.20242 0.96421 1.00133 0.91778 0.93159 0.91807 0.94431 0.93250 0.86481 0.85510 0.93088 0.93128 0.88785 0.75264 0.81718 0.87262 0.90066 0.87571 0.91993 0.91032 0.88507 0.90251 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.12 13.97 21.65 0.30 -57.82 16 2 C -0.02 -1.23 5.29 84.86 0.45 -0.78 16 3 Si 0.94 44.74 24.28 68.60 1.67 46.41 16 4 H -0.27 -12.32 6.54 99.48 0.65 -11.67 16 5 H -0.32 -15.55 7.11 99.48 0.71 -14.84 16 6 H -0.26 -12.01 6.64 99.48 0.66 -11.35 16 7 C -0.24 -12.62 7.54 84.03 0.63 -11.99 16 8 H 0.06 3.69 5.98 -2.91 -0.02 3.68 16 9 N -0.62 -27.31 2.78 -673.71 -1.87 -29.18 16 10 C 0.08 3.38 4.38 86.35 0.38 3.76 16 11 C 0.05 1.75 6.98 72.08 0.50 2.25 16 12 O -0.39 -12.59 10.74 -148.98 -1.60 -14.19 16 13 C 0.06 1.76 6.29 72.08 0.45 2.21 16 14 C 0.13 4.57 3.21 44.97 0.14 4.72 16 15 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 16 C 0.14 5.09 4.44 86.38 0.38 5.48 16 17 N -0.68 -28.50 3.76 -467.09 -1.76 -30.26 16 18 C 0.60 25.91 7.79 86.44 0.67 26.58 16 19 O -0.57 -26.44 16.86 -4.34 -0.07 -26.51 16 20 C -0.10 -4.22 7.14 24.13 0.17 -4.05 16 21 C -0.12 -4.14 10.60 22.27 0.24 -3.90 16 22 C -0.20 -5.80 5.93 -20.14 -0.12 -5.92 16 23 C 0.01 0.19 7.22 25.16 0.18 0.37 16 24 O -0.17 -6.81 10.39 -3.09 -0.03 -6.84 16 25 C -0.04 -1.01 6.30 30.05 0.19 -0.82 16 26 C -0.11 -1.83 5.89 30.74 0.18 -1.64 16 27 C -0.12 -1.68 5.91 30.76 0.18 -1.50 16 28 C -0.05 -0.96 6.28 29.98 0.19 -0.77 16 29 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.06 2.79 4.89 -2.39 -0.01 2.78 16 31 H 0.04 1.49 6.81 -2.38 -0.02 1.48 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 34 H 0.13 2.90 8.14 -2.38 -0.02 2.88 16 35 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 2.12 7.56 -2.39 -0.02 2.10 16 37 H 0.09 2.93 8.14 -2.39 -0.02 2.92 16 38 H 0.41 18.02 7.08 -92.71 -0.66 17.36 16 39 H 0.17 5.25 8.06 -2.91 -0.02 5.22 16 40 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.06 1.14 8.11 -2.39 -0.02 1.12 16 44 H 0.07 0.99 8.12 -2.38 -0.02 0.97 16 45 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 47 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -71.88 366.88 1.69 -70.19 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: 0.23 Total: 34.22 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: 4.83 Total: 13.99 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -3.33 Total: -117.26 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -1.71 Total: -47.54 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.67 Total: 46.41 kcal Total: -71.88 1.69 -70.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050953141.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.277 kcal (2) G-P(sol) polarization free energy of solvation -71.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds