Wall clock time and date at job start Tue Mar 31 2020 20:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00180 * 2 1 4 4 H 1.48496 * 109.47263 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47245 * 119.99732 * 3 2 1 6 6 H 1.48505 * 109.47012 * 239.99741 * 3 2 1 7 7 C 1.38814 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00177 * 196.65466 * 7 2 1 9 9 N 1.36932 * 119.99858 * 16.65807 * 7 2 1 10 10 C 1.47499 * 118.76194 * 26.39169 * 9 7 2 11 11 C 1.53949 * 110.82317 * 138.25223 * 10 9 7 12 12 C 1.51537 * 109.72755 * 320.31040 * 11 10 9 13 13 O 1.42157 * 108.76552 * 91.29255 * 12 11 10 14 14 C 1.38016 * 119.43350 * 272.78716 * 13 12 11 15 15 H 1.09005 * 109.46410 * 303.41762 * 14 13 12 16 16 C 1.52999 * 109.46599 * 183.43096 * 14 13 12 17 17 N 1.46507 * 109.47202 * 64.98326 * 16 14 13 18 18 C 1.34780 * 119.99731 * 179.97438 * 17 16 14 19 19 O 1.21692 * 120.00213 * 0.02562 * 18 17 16 20 20 C 1.46659 * 119.99642 * 179.97438 * 18 17 16 21 21 O 1.34939 * 126.00900 * 359.70001 * 20 18 17 22 22 C 1.33950 * 109.38107 * 179.81912 * 21 20 18 23 23 C 1.35140 * 108.74703 * 0.43957 * 22 21 20 24 24 C 1.36472 * 126.00495 * 179.97438 * 20 18 17 25 25 C 1.51079 * 143.67285 * 0.02562 * 24 20 18 26 26 C 1.54380 * 105.24139 * 197.15641 * 25 24 20 27 27 C 1.51148 * 143.44015 * 179.73011 * 23 22 21 28 28 C 1.45126 * 118.75419 * 206.66111 * 9 7 2 29 29 H 0.97002 * 119.99641 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.17529 * 258.77713 * 10 9 7 31 31 H 1.09007 * 109.16444 * 17.97408 * 10 9 7 32 32 H 1.08996 * 109.46056 * 200.18150 * 11 10 9 33 33 H 1.09000 * 109.29615 * 80.33895 * 11 10 9 34 34 H 1.09003 * 109.58550 * 331.50860 * 12 11 10 35 35 H 1.09000 * 109.58890 * 211.07311 * 12 11 10 36 36 H 1.09005 * 109.47357 * 184.98089 * 16 14 13 37 37 H 1.09004 * 109.47225 * 304.98491 * 16 14 13 38 38 H 0.96992 * 119.99923 * 0.02562 * 17 16 14 39 39 H 1.07999 * 125.62425 * 180.15222 * 22 21 20 40 40 H 1.08994 * 110.28691 * 316.09869 * 25 24 20 41 41 H 1.09004 * 110.28764 * 78.11746 * 25 24 20 42 42 H 1.09003 * 110.75649 * 91.85441 * 26 25 24 43 43 H 1.08999 * 110.75419 * 215.23561 * 26 25 24 44 44 H 1.09001 * 110.29066 * 43.88615 * 27 23 22 45 45 H 1.09009 * 110.28702 * 281.78059 * 27 23 22 46 46 H 1.09005 * 109.46042 * 29.31210 * 28 9 7 47 47 H 1.08999 * 109.46280 * 149.27331 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1041 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0563 -1.2218 0.2686 9 7 1.3686 -2.3633 -0.3389 10 6 0.1968 -2.2917 -1.2318 11 6 0.2304 -3.4269 -2.2710 12 6 1.6508 -3.6333 -2.7573 13 8 2.2767 -4.6124 -1.9385 14 6 2.9059 -4.2212 -0.7741 15 1 3.6641 -3.4728 -1.0047 16 6 3.5697 -5.4349 -0.1206 17 7 4.6380 -5.9343 -0.9899 18 6 5.3659 -7.0052 -0.6159 19 8 5.1355 -7.5575 0.4437 20 6 6.4350 -7.5054 -1.4864 21 8 6.7881 -6.9930 -2.6837 22 6 7.8054 -7.7033 -3.1886 23 6 8.1156 -8.6935 -2.3228 24 6 7.2440 -8.5742 -1.2302 25 6 7.5444 -9.6597 -0.2232 26 6 8.9516 -10.1768 -0.5915 27 6 9.0435 -9.8659 -2.1011 28 6 1.8638 -3.6173 0.1983 29 1 -0.4850 0.8401 -0.0004 30 1 -0.7125 -2.3736 -0.6363 31 1 0.1993 -1.3323 -1.7493 32 1 -0.4078 -3.1656 -3.1151 33 1 -0.1334 -4.3463 -1.8122 34 1 2.2003 -2.6944 -2.6892 35 1 1.6366 -3.9768 -3.7916 36 1 3.9906 -5.1445 0.8421 37 1 2.8270 -6.2186 0.0291 38 1 4.8219 -5.4938 -1.8343 39 1 8.2936 -7.5183 -4.1340 40 1 7.5449 -9.2490 0.7863 41 1 6.8119 -10.4629 -0.3035 42 1 9.7191 -9.6361 -0.0376 43 1 9.0280 -11.2494 -0.4130 44 1 10.0648 -9.5956 -2.3692 45 1 8.7134 -10.7249 -2.6854 46 1 2.3314 -3.4382 1.1665 47 1 1.0338 -4.3134 0.3193 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073713700.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:12 Heat of formation + Delta-G solvation = -37.574456 kcal Electronic energy + Delta-G solvation = -28947.923292 eV Core-core repulsion = 24905.266119 eV Total energy + Delta-G solvation = -4042.657174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.05641 -39.57508 -38.68090 -37.55961 -35.27958 -34.65266 -32.19616 -31.51679 -30.90680 -30.66155 -28.72103 -27.30406 -25.66010 -25.28024 -23.58695 -22.65392 -21.68611 -20.86789 -20.46599 -19.79170 -19.46193 -17.79335 -16.99498 -16.75565 -16.20601 -16.11762 -15.94114 -15.36679 -15.17491 -14.90589 -14.60440 -14.33381 -14.25396 -13.70740 -13.61710 -13.25658 -13.02737 -12.96514 -12.72049 -12.26993 -12.11667 -12.00804 -11.87365 -11.49304 -11.46032 -11.41783 -11.22541 -10.98027 -10.88530 -10.68314 -10.32500 -10.20439 -9.88540 -9.77150 -9.71022 -9.50929 -9.10054 -8.84030 -8.68035 -8.44777 -6.77631 -5.86363 -3.31091 0.93370 2.07861 2.54332 3.15544 3.27188 3.33550 3.39525 3.40337 3.77005 4.14961 4.42636 4.45438 4.56684 4.71353 4.83435 4.90563 5.16288 5.27522 5.33793 5.37856 5.43968 5.52318 5.56346 5.60037 5.66338 5.68825 5.80352 5.84287 5.87391 5.92595 5.96342 6.00844 6.13611 6.15092 6.23614 6.33238 6.44299 6.53545 6.67675 6.69397 6.72313 6.80805 7.31978 7.52883 7.60125 7.74619 8.11516 8.20321 8.37238 9.14756 9.79565 10.26065 11.21213 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.002389 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.430615 B =11717.943419 C =11977.402122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.008 3.992 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.268 4.268 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.177 4.177 12 C 0.088 3.912 13 O -0.396 6.396 14 C 0.066 3.934 15 H 0.053 0.947 16 C 0.131 3.869 17 N -0.707 5.707 18 C 0.599 3.401 19 O -0.524 6.524 20 C -0.058 4.058 21 O -0.155 6.155 22 C 0.008 3.992 23 C -0.220 4.220 24 C -0.110 4.110 25 C -0.054 4.054 26 C -0.119 4.119 27 C -0.046 4.046 28 C 0.128 3.872 29 H 0.255 0.745 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.408 0.592 39 H 0.209 0.791 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.046 -17.550 -7.086 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.732 3.268 4 H -0.216 1.216 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.397 4.397 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.052 3.948 11 C -0.216 4.216 12 C 0.012 3.988 13 O -0.315 6.315 14 C 0.004 3.996 15 H 0.070 0.930 16 C 0.008 3.992 17 N -0.357 5.357 18 C 0.385 3.615 19 O -0.403 6.403 20 C -0.109 4.109 21 O -0.051 6.051 22 C -0.061 4.061 23 C -0.222 4.222 24 C -0.113 4.113 25 C -0.091 4.091 26 C -0.157 4.157 27 C -0.083 4.083 28 C -0.001 4.001 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.243 0.757 39 H 0.226 0.774 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.522 -17.681 -6.463 23.776 hybrid contribution 0.491 1.484 -0.493 1.639 sum 15.013 -16.197 -6.957 23.154 Atomic orbital electron populations 1.70068 1.05268 1.25743 1.53377 1.25048 0.95261 0.98454 1.00365 0.86384 0.78957 0.83319 0.78189 1.21581 1.20783 1.21003 1.19168 0.92744 0.85037 1.42792 0.91636 1.43829 1.33359 1.01484 1.52527 1.21059 0.88839 0.95445 0.89436 1.22828 0.97027 1.01316 1.00405 1.22007 0.93003 0.92088 0.91657 1.86077 1.72603 1.37936 1.34903 1.22633 0.95412 0.93774 0.87737 0.92956 1.21530 0.88301 0.96294 0.93076 1.45917 1.34932 1.30517 1.24352 1.16545 0.79948 0.80573 0.84464 1.90863 1.68424 1.58611 1.22370 1.21255 1.02706 0.99211 0.87771 1.84205 1.42312 1.49345 1.29209 1.23351 0.90525 0.92630 0.99623 1.21333 1.03080 1.01076 0.96685 1.21193 0.95442 0.96106 0.98570 1.20553 0.96645 0.94471 0.97460 1.22399 0.96698 1.01484 0.95076 1.20442 0.97448 0.93658 0.96742 1.21404 0.95025 0.88953 0.94731 0.93484 0.95346 0.90834 0.92103 0.92361 0.92027 0.91222 0.89812 0.90565 0.75747 0.77401 0.89911 0.89742 0.90787 0.90196 0.90800 0.90311 0.92551 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.53 11.10 55.49 0.62 -24.91 16 2 C 0.01 0.22 4.85 -17.43 -0.08 0.13 16 3 Si 0.90 21.23 29.59 -169.99 -5.03 16.21 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.27 -7.08 9.45 -15.06 -0.14 -7.22 16 8 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -14.22 2.21 -171.80 -0.38 -14.60 16 10 C 0.18 4.12 4.75 -3.00 -0.01 4.11 16 11 C -0.18 -3.30 5.79 -26.98 -0.16 -3.45 16 12 C 0.09 1.56 6.38 36.42 0.23 1.79 16 13 O -0.40 -7.05 9.38 -26.54 -0.25 -7.30 16 14 C 0.07 1.17 2.68 -25.79 -0.07 1.10 16 15 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 16 C 0.13 2.04 5.34 -4.04 -0.02 2.02 16 17 N -0.71 -10.33 5.49 -61.62 -0.34 -10.66 16 18 C 0.60 9.26 7.79 -12.86 -0.10 9.16 16 19 O -0.52 -9.39 16.87 5.20 0.09 -9.30 16 20 C -0.06 -0.79 7.13 -36.82 -0.26 -1.05 16 21 O -0.15 -1.85 10.40 4.87 0.05 -1.79 16 22 C 0.01 0.07 12.08 29.63 0.36 0.43 16 23 C -0.22 -2.17 6.93 -104.74 -0.73 -2.90 16 24 C -0.11 -1.35 6.66 -104.31 -0.69 -2.04 16 25 C -0.05 -0.54 6.76 -26.97 -0.18 -0.73 16 26 C -0.12 -0.83 7.06 -25.28 -0.18 -1.01 16 27 C -0.05 -0.32 6.76 -26.93 -0.18 -0.50 16 28 C 0.13 2.62 5.12 -3.83 -0.02 2.60 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.03 0.72 8.03 -51.93 -0.42 0.31 16 31 H 0.07 1.89 6.43 -51.92 -0.33 1.55 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.09 8.01 -51.93 -0.42 0.67 16 34 H 0.06 1.21 7.41 -51.93 -0.38 0.82 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.41 5.50 8.21 -40.82 -0.34 5.17 16 39 H 0.21 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 46 H 0.06 1.15 7.98 -51.93 -0.41 0.73 16 47 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 LS Contribution 379.86 15.07 5.72 5.72 Total: -1.00 -31.33 379.86 -9.11 -40.43 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.34 Total: 3.76 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -2.24 Total: 2.44 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.10 Total: -50.17 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.11 Total: -18.39 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.33 -9.11 -40.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073713700.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.856 kcal (2) G-P(sol) polarization free energy of solvation -31.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds