Wall clock time and date at job start Tue Mar 31 2020 20:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00191 * 2 1 4 4 H 1.48498 * 109.47430 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47144 * 300.00304 * 3 2 1 6 6 H 1.48510 * 109.46941 * 59.99849 * 3 2 1 7 7 C 1.38818 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00168 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99380 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99361 * 179.97438 * 9 7 2 11 11 H 1.08992 * 110.67430 * 36.77984 * 10 9 7 12 12 C 1.54889 * 110.75567 * 273.54475 * 10 9 7 13 13 C 1.54268 * 104.19378 * 203.56077 * 12 10 9 14 14 C 1.53874 * 106.60148 * 23.61082 * 13 12 10 15 15 H 1.08994 * 110.03154 * 240.66594 * 14 13 12 16 16 C 1.52998 * 110.03158 * 119.28401 * 14 13 12 17 17 N 1.46497 * 109.47493 * 66.45405 * 16 14 13 18 18 C 1.34770 * 120.00295 * 179.97438 * 17 16 14 19 19 O 1.21694 * 120.00197 * 0.02562 * 18 17 16 20 20 C 1.46660 * 120.00011 * 179.97438 * 18 17 16 21 21 O 1.35392 * 126.12047 * 359.97438 * 20 18 17 22 22 C 1.34393 * 109.48065 * 179.97438 * 21 20 18 23 23 C 1.33906 * 108.55906 * 359.95969 * 22 21 20 24 24 C 1.35189 * 126.11799 * 180.02562 * 20 18 17 25 25 C 1.50723 * 130.57965 * 0.10650 * 24 20 18 26 26 C 1.53677 * 107.43967 * 164.22031 * 25 24 20 27 27 O 1.42892 * 109.98405 * 48.26361 * 26 25 24 28 28 C 1.43520 * 114.77316 * 287.64858 * 27 26 25 29 29 C 1.54267 * 106.59569 * 0.02562 * 14 13 12 30 30 H 0.97000 * 120.00006 * 0.02562 * 1 2 3 31 31 H 0.96993 * 120.00603 * 359.97438 * 9 7 2 32 32 H 1.08999 * 110.48620 * 84.88053 * 12 10 9 33 33 H 1.09004 * 110.59762 * 322.29278 * 12 10 9 34 34 H 1.08997 * 110.03391 * 264.32308 * 13 12 10 35 35 H 1.08998 * 110.02823 * 142.89789 * 13 12 10 36 36 H 1.09004 * 109.47065 * 306.45152 * 16 14 13 37 37 H 1.09004 * 109.46769 * 186.45603 * 16 14 13 38 38 H 0.97002 * 119.99432 * 0.02562 * 17 16 14 39 39 H 1.08000 * 125.72075 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.85828 * 44.73641 * 25 24 20 41 41 H 1.08998 * 109.86504 * 283.71109 * 25 24 20 42 42 H 1.09004 * 109.37780 * 168.41424 * 26 25 24 43 43 H 1.08996 * 109.38648 * 288.20419 * 26 25 24 44 44 H 1.09002 * 109.82211 * 171.05077 * 28 27 26 45 45 H 1.08996 * 109.82268 * 291.97989 * 28 27 26 46 46 H 1.09003 * 110.48929 * 95.07025 * 29 14 13 47 47 H 1.09002 * 110.48483 * 217.71078 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9578 -3.5816 0.6111 12 6 2.4101 -4.0873 -1.4451 13 6 2.5944 -5.6160 -1.3502 14 6 1.7971 -6.0793 -0.1183 15 1 2.4654 -6.5467 0.6048 16 6 0.7082 -7.0678 -0.5402 17 7 1.3306 -8.2969 -1.0381 18 6 0.5605 -9.3161 -1.4678 19 8 -0.6520 -9.2152 -1.4426 20 6 1.1837 -10.5463 -1.9668 21 8 2.5128 -10.7903 -2.0510 22 6 2.7116 -12.0204 -2.5546 23 6 1.5193 -12.5792 -2.7978 24 6 0.5338 -11.6393 -2.4259 25 6 -0.9412 -11.9177 -2.5623 26 6 -1.0968 -13.1298 -3.4941 27 8 -0.2151 -14.1770 -3.0846 28 6 1.1731 -13.9354 -3.3574 29 6 1.1556 -4.8160 0.4920 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 3.3350 -3.6111 -1.7704 33 1 1.5957 -3.8428 -2.1271 34 1 3.6497 -5.8579 -1.2245 35 1 2.2055 -6.0954 -2.2486 36 1 0.0997 -6.6237 -1.3281 37 1 0.0776 -7.3016 0.3176 38 1 2.2971 -8.3775 -1.0579 39 1 3.6720 -12.4811 -2.7328 40 1 -1.4431 -11.0518 -2.9939 41 1 -1.3672 -12.1446 -1.5850 42 1 -2.1259 -13.4870 -3.4540 43 1 -0.8558 -12.8344 -4.5152 44 1 1.7829 -14.7001 -2.8764 45 1 1.3457 -13.9466 -4.4336 46 1 0.1372 -4.6897 0.1245 47 1 1.1653 -4.8712 1.5806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086768152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:39 Heat of formation + Delta-G solvation = -66.551003 kcal Electronic energy + Delta-G solvation = -28046.156127 eV Core-core repulsion = 24002.242436 eV Total energy + Delta-G solvation = -4043.913691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -43.22884 -39.77937 -38.96449 -38.13612 -35.12239 -33.97713 -33.38399 -32.47560 -30.89418 -29.87207 -28.85030 -27.29840 -26.67600 -24.95705 -23.82090 -23.12771 -22.73942 -20.53747 -20.12133 -19.69567 -19.39560 -18.33961 -17.11263 -16.96417 -16.72925 -16.44820 -16.14470 -15.69729 -15.55572 -15.33334 -14.96723 -14.73183 -14.32049 -13.85987 -13.81409 -13.55569 -13.35349 -13.07741 -12.89664 -12.80733 -12.63866 -12.21270 -11.99273 -11.87519 -11.32792 -11.15595 -10.92871 -10.80569 -10.65492 -10.58755 -10.50259 -10.29664 -10.17023 -10.13018 -9.86410 -9.83108 -9.66788 -9.35321 -8.95430 -8.88070 -6.94357 -5.76789 -3.05332 0.71520 1.80402 2.30052 2.90589 2.98068 3.34271 3.42824 3.48386 3.50713 4.00939 4.19738 4.43978 4.52704 4.58284 4.74400 4.78703 4.81593 4.88999 4.89905 5.02572 5.06044 5.23926 5.38936 5.44802 5.49548 5.52265 5.56059 5.65563 5.66239 5.69048 5.86903 5.90123 5.94201 5.98120 6.02571 6.16022 6.27493 6.31407 6.40598 6.44350 6.55725 6.67086 6.70134 6.86121 7.11055 7.24734 7.71023 7.85776 8.42163 9.53090 10.11938 10.46027 11.45943 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.001815 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.546531 B =15427.095931 C =15878.725195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.177 3.823 11 H 0.053 0.947 12 C -0.143 4.143 13 C -0.121 4.121 14 C -0.101 4.101 15 H 0.075 0.925 16 C 0.125 3.875 17 N -0.714 5.714 18 C 0.599 3.401 19 O -0.517 6.517 20 C -0.064 4.064 21 O -0.167 6.167 22 C 0.015 3.985 23 C -0.239 4.239 24 C -0.085 4.085 25 C -0.088 4.088 26 C 0.062 3.938 27 O -0.379 6.379 28 C 0.135 3.865 29 C -0.121 4.121 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.405 0.595 39 H 0.212 0.788 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.054 0.946 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.595 -30.386 -6.618 31.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.361 5.361 10 C 0.066 3.934 11 H 0.071 0.929 12 C -0.184 4.184 13 C -0.159 4.159 14 C -0.120 4.120 15 H 0.093 0.907 16 C 0.003 3.997 17 N -0.364 5.364 18 C 0.385 3.615 19 O -0.395 6.395 20 C -0.116 4.116 21 O -0.063 6.063 22 C -0.055 4.055 23 C -0.241 4.241 24 C -0.088 4.088 25 C -0.125 4.125 26 C -0.015 4.015 27 O -0.298 6.298 28 C 0.059 3.941 29 C -0.160 4.160 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.240 0.760 39 H 0.229 0.771 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.121 0.879 43 H 0.073 0.927 44 H 0.124 0.876 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.974 -30.063 -6.388 30.990 hybrid contribution 0.867 1.067 -0.249 1.397 sum 4.841 -28.996 -6.638 30.138 Atomic orbital electron populations 1.69671 1.05095 1.25536 1.57787 1.24757 0.95525 0.97719 1.03095 0.86130 0.78768 0.84197 0.77173 1.20581 1.21906 1.21889 1.19292 0.91027 0.84143 1.42467 0.91142 1.42387 1.05764 0.99775 1.88185 1.21156 0.93882 0.85574 0.92743 0.92933 1.23071 1.01339 0.92625 1.01366 1.22220 0.99023 0.97990 0.96696 1.21967 0.96370 0.95651 0.98025 0.90695 1.21678 0.95779 0.82771 0.99511 1.45977 1.10530 1.15807 1.64109 1.16507 0.86213 0.80810 0.77983 1.90887 1.12472 1.80458 1.55667 1.21479 0.80703 0.98085 1.11290 1.84317 1.24960 1.31910 1.65142 1.23628 0.99721 0.83190 0.98932 1.21037 0.93307 1.00279 1.09478 1.20213 0.97474 0.91905 0.99160 1.20904 0.90111 0.99363 1.02099 1.22720 0.94488 0.87566 0.96690 1.87988 1.15919 1.42317 1.83536 1.21042 0.82909 0.91234 0.98929 1.22573 1.00136 0.93379 0.99916 0.93559 0.78190 0.92590 0.91794 0.92372 0.92412 0.90672 0.91051 0.75997 0.77103 0.88298 0.89026 0.87929 0.92723 0.87566 0.91441 0.91105 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.58 9.98 -15.06 -0.15 -6.74 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -17.93 5.26 -51.48 -0.27 -18.20 16 10 C 0.18 3.42 3.53 -65.92 -0.23 3.18 16 11 H 0.05 1.03 8.12 -51.93 -0.42 0.61 16 12 C -0.14 -2.47 6.51 -25.07 -0.16 -2.63 16 13 C -0.12 -1.57 6.13 -25.61 -0.16 -1.73 16 14 C -0.10 -1.24 2.98 -89.50 -0.27 -1.51 16 15 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 16 C 0.13 1.52 4.70 -4.04 -0.02 1.50 16 17 N -0.71 -7.91 5.29 -61.63 -0.33 -8.24 16 18 C 0.60 7.66 7.78 -12.86 -0.10 7.56 16 19 O -0.52 -8.00 15.63 5.19 0.08 -7.92 16 20 C -0.06 -0.73 7.11 -37.27 -0.27 -0.99 16 21 O -0.17 -1.56 10.44 2.36 0.02 -1.54 16 22 C 0.01 0.10 12.06 29.21 0.35 0.45 16 23 C -0.24 -1.98 6.04 -105.01 -0.63 -2.62 16 24 C -0.08 -0.90 6.02 -104.58 -0.63 -1.53 16 25 C -0.09 -0.84 5.71 -27.52 -0.16 -1.00 16 26 C 0.06 0.47 6.75 37.51 0.25 0.73 16 27 O -0.38 -3.36 10.70 -35.23 -0.38 -3.73 16 28 C 0.14 0.88 7.27 36.02 0.26 1.14 16 29 C -0.12 -1.89 5.97 -25.06 -0.15 -2.04 16 30 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.38 10.17 7.73 -40.82 -0.32 9.86 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.72 7.58 -51.93 -0.39 0.33 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.41 3.73 8.07 -40.82 -0.33 3.40 16 39 H 0.21 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.10 1.00 7.64 -51.93 -0.40 0.60 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.37 8.08 -51.93 -0.42 -0.05 16 44 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.07 1.16 7.74 -51.93 -0.40 0.76 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -33.51 384.03 -8.83 -42.34 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.30 Total: 8.38 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.15 Total: -6.75 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.13 Total: -53.95 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.27 Total: -13.20 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.51 -8.83 -42.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086768152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.209 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds