Wall clock time and date at job start Tue Mar 31 2020 20:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00191 * 2 1 4 4 H 1.48498 * 109.47430 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47144 * 300.00304 * 3 2 1 6 6 H 1.48510 * 109.46941 * 59.99849 * 3 2 1 7 7 C 1.38818 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00168 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99380 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99361 * 179.97438 * 9 7 2 11 11 H 1.08992 * 110.67430 * 36.77984 * 10 9 7 12 12 C 1.54889 * 110.75567 * 273.54475 * 10 9 7 13 13 C 1.54268 * 104.19378 * 203.56077 * 12 10 9 14 14 C 1.53874 * 106.60148 * 23.61082 * 13 12 10 15 15 H 1.08994 * 110.03154 * 240.66594 * 14 13 12 16 16 C 1.52998 * 110.03158 * 119.28401 * 14 13 12 17 17 N 1.46497 * 109.47493 * 66.45405 * 16 14 13 18 18 C 1.34770 * 120.00295 * 179.97438 * 17 16 14 19 19 O 1.21694 * 120.00197 * 0.02562 * 18 17 16 20 20 C 1.46660 * 120.00011 * 179.97438 * 18 17 16 21 21 O 1.35392 * 126.12047 * 359.97438 * 20 18 17 22 22 C 1.34393 * 109.48065 * 179.97438 * 21 20 18 23 23 C 1.33906 * 108.55906 * 359.95969 * 22 21 20 24 24 C 1.35189 * 126.11799 * 180.02562 * 20 18 17 25 25 C 1.50723 * 130.57965 * 0.10650 * 24 20 18 26 26 C 1.53677 * 107.43967 * 164.22031 * 25 24 20 27 27 O 1.42892 * 109.98405 * 48.26361 * 26 25 24 28 28 C 1.43520 * 114.77316 * 287.64858 * 27 26 25 29 29 C 1.54267 * 106.59569 * 0.02562 * 14 13 12 30 30 H 0.97000 * 120.00006 * 0.02562 * 1 2 3 31 31 H 0.96993 * 120.00603 * 359.97438 * 9 7 2 32 32 H 1.08999 * 110.48620 * 84.88053 * 12 10 9 33 33 H 1.09004 * 110.59762 * 322.29278 * 12 10 9 34 34 H 1.08997 * 110.03391 * 264.32308 * 13 12 10 35 35 H 1.08998 * 110.02823 * 142.89789 * 13 12 10 36 36 H 1.09004 * 109.47065 * 306.45152 * 16 14 13 37 37 H 1.09004 * 109.46769 * 186.45603 * 16 14 13 38 38 H 0.97002 * 119.99432 * 0.02562 * 17 16 14 39 39 H 1.08000 * 125.72075 * 179.97438 * 22 21 20 40 40 H 1.08999 * 109.85828 * 44.73641 * 25 24 20 41 41 H 1.08998 * 109.86504 * 283.71109 * 25 24 20 42 42 H 1.09004 * 109.37780 * 168.41424 * 26 25 24 43 43 H 1.08996 * 109.38648 * 288.20419 * 26 25 24 44 44 H 1.09002 * 109.82211 * 171.05077 * 28 27 26 45 45 H 1.08996 * 109.82268 * 291.97989 * 28 27 26 46 46 H 1.09003 * 110.48929 * 95.07025 * 29 14 13 47 47 H 1.09002 * 110.48483 * 217.71078 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9578 -3.5816 0.6111 12 6 2.4101 -4.0873 -1.4451 13 6 2.5944 -5.6160 -1.3502 14 6 1.7971 -6.0793 -0.1183 15 1 2.4654 -6.5467 0.6048 16 6 0.7082 -7.0678 -0.5402 17 7 1.3306 -8.2969 -1.0381 18 6 0.5605 -9.3161 -1.4678 19 8 -0.6520 -9.2152 -1.4426 20 6 1.1837 -10.5463 -1.9668 21 8 2.5128 -10.7903 -2.0510 22 6 2.7116 -12.0204 -2.5546 23 6 1.5193 -12.5792 -2.7978 24 6 0.5338 -11.6393 -2.4259 25 6 -0.9412 -11.9177 -2.5623 26 6 -1.0968 -13.1298 -3.4941 27 8 -0.2151 -14.1770 -3.0846 28 6 1.1731 -13.9354 -3.3574 29 6 1.1556 -4.8160 0.4920 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 3.3350 -3.6111 -1.7704 33 1 1.5957 -3.8428 -2.1271 34 1 3.6497 -5.8579 -1.2245 35 1 2.2055 -6.0954 -2.2486 36 1 0.0997 -6.6237 -1.3281 37 1 0.0776 -7.3016 0.3176 38 1 2.2971 -8.3775 -1.0579 39 1 3.6720 -12.4811 -2.7328 40 1 -1.4431 -11.0518 -2.9939 41 1 -1.3672 -12.1446 -1.5850 42 1 -2.1259 -13.4870 -3.4540 43 1 -0.8558 -12.8344 -4.5152 44 1 1.7829 -14.7001 -2.8764 45 1 1.3457 -13.9466 -4.4336 46 1 0.1372 -4.6897 0.1245 47 1 1.1653 -4.8712 1.5806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086768152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:08 Heat of formation + Delta-G solvation = -89.925327 kcal Electronic energy + Delta-G solvation = -28047.169714 eV Core-core repulsion = 24002.242436 eV Total energy + Delta-G solvation = -4044.927278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 29.34 seconds Orbital eigenvalues (eV) -43.89002 -40.78823 -39.55674 -39.40930 -36.44521 -35.14356 -34.57557 -33.11762 -32.60668 -30.91598 -29.92725 -28.75790 -27.21363 -26.20116 -25.01635 -24.47431 -23.59413 -21.59470 -20.97668 -20.76273 -20.57025 -19.27679 -18.98318 -17.69331 -17.43653 -17.21745 -17.06247 -16.75540 -16.60375 -16.21274 -15.96383 -15.82976 -15.63880 -15.26935 -15.01295 -14.52609 -14.34866 -14.20283 -14.07674 -13.67914 -13.60538 -13.37425 -13.24358 -12.98232 -12.70501 -12.59145 -12.37976 -12.09647 -12.02461 -11.92659 -11.81016 -11.67886 -11.58912 -11.40201 -11.25420 -10.90944 -10.82531 -10.54471 -10.28147 -9.64420 -8.98300 -7.94393 -5.22447 -0.04469 1.19547 1.46535 1.47227 1.57160 1.57707 1.99625 2.14880 2.56199 2.81806 3.37822 3.38662 3.56463 3.65469 3.73339 3.77407 3.81463 3.92914 4.17906 4.28199 4.29225 4.33373 4.38971 4.45732 4.50796 4.60758 4.62027 4.70424 4.76085 4.77848 4.78173 4.79693 4.86539 4.96226 5.02729 5.07675 5.09602 5.16870 5.21914 5.27137 5.42966 5.49792 5.52247 5.63486 5.71939 6.13094 6.28653 6.38183 6.95130 7.33778 8.12460 8.33961 9.29536 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.033745 B = 0.001815 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.546531 B =15427.095931 C =15878.725195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.736 5.736 10 C 0.164 3.836 11 H 0.053 0.947 12 C -0.139 4.139 13 C -0.109 4.109 14 C -0.084 4.084 15 H 0.103 0.897 16 C 0.133 3.867 17 N -0.702 5.702 18 C 0.597 3.403 19 O -0.556 6.556 20 C -0.093 4.093 21 O -0.170 6.170 22 C 0.038 3.962 23 C -0.257 4.257 24 C -0.097 4.097 25 C -0.090 4.090 26 C 0.066 3.934 27 O -0.398 6.398 28 C 0.132 3.868 29 C -0.115 4.115 30 H 0.250 0.750 31 H 0.371 0.629 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.417 0.583 39 H 0.261 0.739 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.063 0.937 44 H 0.129 0.871 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.492 -32.811 -7.088 34.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.223 1.223 6 H -0.221 1.221 7 C -0.368 4.368 8 H 0.095 0.905 9 N -0.375 5.375 10 C 0.056 3.944 11 H 0.071 0.929 12 C -0.179 4.179 13 C -0.147 4.147 14 C -0.103 4.103 15 H 0.121 0.879 16 C 0.009 3.991 17 N -0.353 5.353 18 C 0.384 3.616 19 O -0.436 6.436 20 C -0.144 4.144 21 O -0.066 6.066 22 C -0.030 4.030 23 C -0.258 4.258 24 C -0.100 4.100 25 C -0.127 4.127 26 C -0.011 4.011 27 O -0.317 6.317 28 C 0.056 3.944 29 C -0.154 4.154 30 H 0.059 0.941 31 H 0.203 0.797 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.254 0.746 39 H 0.277 0.723 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.147 0.853 45 H 0.103 0.897 46 H 0.075 0.925 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.946 -32.530 -6.860 33.963 hybrid contribution 0.030 1.703 -0.123 1.707 sum 6.976 -30.827 -6.983 32.369 Atomic orbital electron populations 1.69830 1.06645 1.25864 1.59940 1.25582 0.96393 1.01162 1.04152 0.85084 0.78315 0.79917 0.76536 1.18870 1.22297 1.22138 1.19684 0.91460 0.85286 1.40348 0.90540 1.42615 1.05395 1.01150 1.88366 1.21463 0.94160 0.84575 0.94241 0.92853 1.22899 1.00005 0.95961 0.99037 1.22144 1.00871 0.94358 0.97281 1.21830 0.96286 0.94065 0.98125 0.87886 1.21476 0.95585 0.83136 0.98874 1.45804 1.11010 1.14962 1.63501 1.16731 0.85895 0.81464 0.77510 1.90859 1.14089 1.81339 1.57355 1.21135 0.81774 0.97906 1.13569 1.84307 1.23713 1.33200 1.65428 1.24606 1.01150 0.81632 0.95646 1.21338 0.93212 1.00890 1.10378 1.20568 0.98287 0.92522 0.98669 1.20901 0.89965 0.99916 1.01954 1.22743 0.95299 0.86632 0.96382 1.87958 1.17231 1.42606 1.83861 1.21335 0.81969 0.90840 1.00227 1.22471 0.98913 0.93521 1.00485 0.94148 0.79695 0.93133 0.94233 0.89637 0.91665 0.92433 0.91327 0.74584 0.72289 0.89565 0.90184 0.86559 0.91837 0.85288 0.89668 0.92482 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 2 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 3 Si 0.97 46.58 29.55 68.60 2.03 48.61 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 7 C -0.24 -13.16 9.98 84.04 0.84 -12.32 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.74 -37.37 5.26 -316.79 -1.67 -39.04 16 10 C 0.16 6.29 3.53 46.29 0.16 6.45 16 11 H 0.05 2.04 8.12 -2.39 -0.02 2.02 16 12 C -0.14 -4.70 6.51 31.67 0.21 -4.50 16 13 C -0.11 -2.56 6.13 31.32 0.19 -2.37 16 14 C -0.08 -1.90 2.98 -10.07 -0.03 -1.93 16 15 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 16 C 0.13 3.12 4.70 86.38 0.41 3.53 16 17 N -0.70 -14.71 5.29 -467.11 -2.47 -17.18 16 18 C 0.60 15.25 7.78 86.44 0.67 15.93 16 19 O -0.56 -17.89 15.63 -4.33 -0.07 -17.96 16 20 C -0.09 -2.03 7.11 23.77 0.17 -1.86 16 21 O -0.17 -2.76 10.44 -14.48 -0.15 -2.91 16 22 C 0.04 0.38 12.06 66.83 0.81 1.19 16 23 C -0.26 -3.62 6.04 -20.12 -0.12 -3.74 16 24 C -0.10 -2.01 6.02 -19.84 -0.12 -2.13 16 25 C -0.09 -1.78 5.71 30.08 0.17 -1.60 16 26 C 0.07 0.96 6.75 72.21 0.49 1.44 16 27 O -0.40 -6.39 10.70 -148.98 -1.59 -7.99 16 28 C 0.13 1.34 7.27 71.25 0.52 1.85 16 29 C -0.12 -3.53 5.97 31.68 0.19 -3.34 16 30 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.37 20.42 7.73 -92.71 -0.72 19.71 16 32 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16 36 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.42 6.65 8.07 -92.71 -0.75 5.90 16 39 H 0.26 -0.30 8.06 -2.91 -0.02 -0.32 16 40 H 0.09 1.87 7.64 -2.39 -0.02 1.85 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.06 0.79 8.08 -2.39 -0.02 0.77 16 44 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.06 1.91 7.74 -2.39 -0.02 1.89 16 47 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -75.41 384.03 0.91 -74.50 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.47 Total: 29.76 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 5.02 Total: -7.63 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -3.85 Total: -116.38 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -1.81 Total: -28.86 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -75.41 0.91 -74.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086768152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.426 kcal (2) G-P(sol) polarization free energy of solvation -75.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 29.34 seconds