Wall clock time and date at job start Tue Mar 31 2020 21:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48500 * 109.47142 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47443 * 120.00202 * 3 2 1 6 6 H 1.48507 * 109.46844 * 240.00176 * 3 2 1 7 7 C 1.38811 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00567 * 162.76498 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.08996 * 109.45012 * 301.22835 * 12 11 10 14 14 N 1.46499 * 109.46007 * 181.25927 * 12 11 10 15 15 C 1.34781 * 119.99985 * 84.93549 * 14 12 11 16 16 O 1.21695 * 119.99447 * 0.02562 * 15 14 12 17 17 C 1.46654 * 120.00075 * 179.97438 * 15 14 12 18 18 C 1.36773 * 125.95812 * 179.71959 * 17 15 14 19 19 C 1.39650 * 106.53181 * 179.84816 * 18 17 15 20 20 C 1.35575 * 107.41842 * 0.45298 * 19 18 17 21 21 O 1.33494 * 108.60525 * 359.67563 * 20 19 18 22 22 C 1.50999 * 123.79538 * 179.59652 * 20 19 18 23 23 C 1.53326 * 108.41908 * 343.29027 * 22 20 19 24 24 C 1.53106 * 109.55896 * 50.15220 * 23 22 20 25 25 C 1.50699 * 128.12077 * 180.23114 * 19 18 17 26 26 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 27 27 H 1.09004 * 109.49497 * 178.68287 * 26 12 11 28 28 O 1.42895 * 109.52575 * 58.59874 * 26 12 11 29 29 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 30 30 H 0.97000 * 119.99965 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 32 32 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 33 33 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 34 34 H 1.09002 * 109.36461 * 65.49364 * 11 10 9 35 35 H 0.97006 * 120.00167 * 264.93568 * 14 12 11 36 36 H 1.08002 * 126.73013 * 359.97438 * 18 17 15 37 37 H 1.08998 * 109.67413 * 103.02293 * 22 20 19 38 38 H 1.08992 * 109.67211 * 223.56069 * 22 20 19 39 39 H 1.09009 * 109.45480 * 290.13068 * 23 22 20 40 40 H 1.08990 * 109.44470 * 170.17581 * 23 22 20 41 41 H 1.09001 * 109.47981 * 169.77702 * 24 23 22 42 42 H 1.09001 * 109.48120 * 49.75686 * 24 23 22 43 43 H 1.09003 * 109.68410 * 283.58726 * 25 19 18 44 44 H 1.09007 * 109.68285 * 44.11161 * 25 19 18 45 45 H 0.96706 * 113.99955 * 180.14000 * 28 26 12 46 46 H 1.09004 * 109.58525 * 246.16048 * 29 9 7 47 47 H 1.08995 * 109.58430 * 6.43945 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2124 6 1 3.1038 1.6964 -1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0539 -1.2233 -0.2766 9 7 1.3717 -2.3613 0.3524 10 6 0.2275 -2.3357 1.2737 11 6 0.4938 -3.3040 2.4248 12 6 0.8147 -4.6893 1.8591 13 1 -0.0220 -5.0368 1.2532 14 7 1.0409 -5.6265 2.9622 15 6 -0.0044 -6.2470 3.5443 16 8 -1.1360 -6.0291 3.1532 17 6 0.2220 -7.1856 4.6482 18 6 -0.7446 -7.8750 5.3273 19 6 -0.0834 -8.6469 6.2850 20 6 1.2433 -8.3957 6.1634 21 8 1.4213 -7.5156 5.1756 22 6 2.3018 -9.0333 7.0312 23 6 1.6200 -9.6278 8.2692 24 6 0.4342 -10.4935 7.8352 25 6 -0.6832 -9.5936 7.2925 26 6 2.0734 -4.6090 0.9922 27 1 2.3148 -5.6004 0.6087 28 8 3.1639 -4.1228 1.7773 29 6 1.8216 -3.6549 -0.1795 30 1 -0.4850 0.8400 0.0004 31 1 0.0986 -1.3278 1.6683 32 1 -0.6750 -2.6411 0.7442 33 1 -0.3892 -3.3664 3.0609 34 1 1.3401 -2.9451 3.0105 35 1 1.9430 -5.8004 3.2737 36 1 -1.8099 -7.8324 5.1550 37 1 2.8055 -9.8236 6.4746 38 1 3.0274 -8.2801 7.3380 39 1 1.2650 -8.8211 8.9106 40 1 2.3350 -10.2402 8.8183 41 1 0.0633 -11.0574 8.6911 42 1 0.7548 -11.1848 7.0558 43 1 -1.1274 -9.0262 8.1104 44 1 -1.4473 -10.2050 6.8123 45 1 3.9954 -4.0444 1.2897 46 1 1.0518 -4.0702 -0.8300 47 1 2.7427 -3.5168 -0.7455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090320232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:08 Heat of formation + Delta-G solvation = -60.005688 kcal Electronic energy + Delta-G solvation = -29114.852785 eV Core-core repulsion = 25071.222920 eV Total energy + Delta-G solvation = -4043.629865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.96777 -39.66392 -37.97033 -37.44393 -34.92891 -34.39677 -33.22767 -31.89030 -30.57547 -30.22131 -29.36306 -28.58764 -25.48492 -24.24108 -23.00951 -22.35528 -22.14032 -21.53141 -20.59436 -19.61661 -18.99195 -17.87636 -17.11537 -16.71398 -16.20546 -16.05659 -15.72767 -15.06452 -14.73062 -14.46497 -14.40413 -14.23546 -14.05969 -13.87855 -13.69054 -13.24673 -13.10433 -13.05173 -12.86446 -12.78543 -12.53422 -12.09460 -12.01703 -11.33036 -11.28722 -11.23745 -11.03573 -10.94927 -10.82995 -10.73221 -10.32172 -10.25493 -10.09756 -10.02841 -9.82547 -9.64803 -9.34104 -8.79607 -8.47463 -8.36421 -6.67058 -5.77571 -3.19897 0.99880 2.15690 2.46176 3.26008 3.32074 3.39698 3.45733 3.46940 4.25698 4.38117 4.41294 4.48472 4.53850 4.69654 4.74756 4.92849 5.03320 5.10188 5.11687 5.24839 5.35892 5.37372 5.40659 5.43780 5.50728 5.55600 5.59770 5.69647 5.75121 5.79387 5.84439 5.87089 5.95480 6.21825 6.28571 6.35883 6.47742 6.57418 6.62965 6.75247 6.83767 6.92644 7.41066 7.65847 7.70779 7.79294 8.09187 8.26180 8.45193 9.20534 9.83445 10.39556 11.30983 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025773 B = 0.002363 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.136165 B =11848.940625 C =12101.834084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.582 5.582 10 C 0.174 3.826 11 C -0.144 4.144 12 C 0.161 3.839 13 H 0.094 0.906 14 N -0.706 5.706 15 C 0.597 3.403 16 O -0.522 6.522 17 C -0.073 4.073 18 C -0.115 4.115 19 C -0.191 4.191 20 C 0.012 3.988 21 O -0.155 6.155 22 C -0.040 4.040 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.050 4.050 26 C 0.082 3.918 27 H 0.046 0.954 28 O -0.555 6.555 29 C 0.119 3.881 30 H 0.255 0.745 31 H 0.091 0.909 32 H 0.020 0.980 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.405 0.595 36 H 0.159 0.841 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.373 0.627 46 H 0.028 0.972 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.111 -21.755 14.715 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.304 5.304 10 C 0.047 3.953 11 C -0.184 4.184 12 C 0.057 3.943 13 H 0.112 0.888 14 N -0.356 5.356 15 C 0.383 3.617 16 O -0.401 6.401 17 C -0.125 4.125 18 C -0.136 4.136 19 C -0.193 4.193 20 C -0.041 4.041 21 O -0.051 6.051 22 C -0.077 4.077 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.087 4.087 26 C 0.020 3.980 27 H 0.064 0.936 28 O -0.359 6.359 29 C -0.009 4.009 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.240 0.760 36 H 0.177 0.823 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.219 0.781 46 H 0.046 0.954 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.005 -21.274 14.739 26.054 hybrid contribution 1.090 0.797 -0.344 1.393 sum 4.095 -20.477 14.395 25.363 Atomic orbital electron populations 1.70024 1.05258 1.25695 1.53583 1.25033 0.95284 0.98438 1.00897 0.86358 0.78895 0.83356 0.78057 1.21658 1.21035 1.20949 1.19068 0.92485 0.84794 1.41654 0.91839 1.43894 1.35652 1.00880 1.49965 1.20698 0.88456 0.98457 0.87647 1.22441 1.00836 0.94362 1.00798 1.21124 0.96656 0.89760 0.86730 0.88841 1.46139 1.09413 1.43934 1.36075 1.16592 0.85460 0.79235 0.80447 1.90889 1.22156 1.64147 1.62864 1.22288 0.82742 1.05573 1.01921 1.21579 1.00515 0.96316 0.95174 1.20140 0.92814 1.04169 1.02150 1.22691 0.96336 0.93540 0.91504 1.83907 1.32266 1.48723 1.40192 1.20318 0.94292 0.99392 0.93682 1.21596 0.97796 0.99833 0.96155 1.21644 0.95372 0.97831 1.01150 1.20092 0.97413 0.95272 0.95912 1.22626 0.86693 0.95803 0.92853 0.93591 1.86451 1.20341 1.89079 1.40072 1.21535 0.98752 0.88022 0.92578 0.93513 0.89071 0.96183 0.92881 0.91469 0.75973 0.82298 0.89205 0.89351 0.91056 0.90325 0.91020 0.91445 0.90629 0.90535 0.78070 0.95441 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.43 11.19 55.49 0.62 -25.81 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.80 9.58 -15.06 -0.14 -6.95 16 8 H 0.06 1.67 7.89 -52.48 -0.41 1.26 16 9 N -0.58 -14.44 2.94 -172.58 -0.51 -14.95 16 10 C 0.17 4.30 5.28 -3.94 -0.02 4.28 16 11 C -0.14 -3.05 5.50 -26.83 -0.15 -3.20 16 12 C 0.16 2.95 2.20 -67.88 -0.15 2.80 16 13 H 0.09 1.82 7.58 -51.93 -0.39 1.43 16 14 N -0.71 -11.49 5.05 -55.08 -0.28 -11.76 16 15 C 0.60 10.17 7.75 -12.86 -0.10 10.07 16 16 O -0.52 -10.43 16.53 5.19 0.09 -10.35 16 17 C -0.07 -1.08 7.14 -36.72 -0.26 -1.34 16 18 C -0.12 -1.51 10.60 -39.58 -0.42 -1.93 16 19 C -0.19 -2.08 5.93 -105.05 -0.62 -2.70 16 20 C 0.01 0.13 7.22 -35.11 -0.25 -0.12 16 21 O -0.16 -2.06 10.39 5.55 0.06 -2.00 16 22 C -0.04 -0.27 6.30 -27.57 -0.17 -0.45 16 23 C -0.12 -0.62 5.89 -26.51 -0.16 -0.77 16 24 C -0.12 -0.69 5.91 -26.48 -0.16 -0.84 16 25 C -0.05 -0.38 6.28 -27.68 -0.17 -0.55 16 26 C 0.08 1.38 3.38 -26.61 -0.09 1.29 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 O -0.55 -9.22 12.09 -35.23 -0.43 -9.64 16 29 C 0.12 2.38 6.16 -3.71 -0.02 2.36 16 30 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.09 2.53 6.04 -51.93 -0.31 2.21 16 32 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 34 H 0.07 1.49 7.61 -51.93 -0.40 1.10 16 35 H 0.41 6.00 8.01 -40.82 -0.33 5.67 16 36 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.41 8.11 -51.92 -0.42 -0.02 16 40 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 45 H 0.37 4.87 9.08 45.56 0.41 5.28 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -32.87 377.28 -9.24 -42.10 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.47 Total: 8.00 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.98 Total: 1.93 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.16 Total: -52.52 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.28 Total: -21.99 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.87 -9.24 -42.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090320232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.902 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds