Wall clock time and date at job start Tue Mar 31 2020 21:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99935 * 2 1 4 4 H 1.48500 * 109.47142 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47443 * 120.00202 * 3 2 1 6 6 H 1.48507 * 109.46844 * 240.00176 * 3 2 1 7 7 C 1.38811 * 120.00254 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00567 * 162.76498 * 7 2 1 9 9 N 1.36943 * 119.99955 * 342.76805 * 7 2 1 10 10 C 1.46923 * 120.62930 * 332.17173 * 9 7 2 11 11 C 1.52755 * 109.00900 * 233.58508 * 10 9 7 12 12 C 1.53044 * 109.38132 * 305.58408 * 11 10 9 13 13 H 1.08996 * 109.45012 * 301.22835 * 12 11 10 14 14 N 1.46499 * 109.46007 * 181.25927 * 12 11 10 15 15 C 1.34781 * 119.99985 * 84.93549 * 14 12 11 16 16 O 1.21695 * 119.99447 * 0.02562 * 15 14 12 17 17 C 1.46654 * 120.00075 * 179.97438 * 15 14 12 18 18 C 1.36773 * 125.95812 * 179.71959 * 17 15 14 19 19 C 1.39650 * 106.53181 * 179.84816 * 18 17 15 20 20 C 1.35575 * 107.41842 * 0.45298 * 19 18 17 21 21 O 1.33494 * 108.60525 * 359.67563 * 20 19 18 22 22 C 1.50999 * 123.79538 * 179.59652 * 20 19 18 23 23 C 1.53326 * 108.41908 * 343.29027 * 22 20 19 24 24 C 1.53106 * 109.55896 * 50.15220 * 23 22 20 25 25 C 1.50699 * 128.12077 * 180.23114 * 19 18 17 26 26 C 1.53046 * 109.53404 * 61.24392 * 12 11 10 27 27 H 1.09004 * 109.49497 * 178.68287 * 26 12 11 28 28 O 1.42895 * 109.52575 * 58.59874 * 26 12 11 29 29 C 1.46927 * 120.63120 * 152.45061 * 9 7 2 30 30 H 0.97000 * 119.99965 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.58782 * 353.41781 * 10 9 7 32 32 H 1.09006 * 109.58879 * 113.84066 * 10 9 7 33 33 H 1.09007 * 109.56573 * 185.55521 * 11 10 9 34 34 H 1.09002 * 109.36461 * 65.49364 * 11 10 9 35 35 H 0.97006 * 120.00167 * 264.93568 * 14 12 11 36 36 H 1.08002 * 126.73013 * 359.97438 * 18 17 15 37 37 H 1.08998 * 109.67413 * 103.02293 * 22 20 19 38 38 H 1.08992 * 109.67211 * 223.56069 * 22 20 19 39 39 H 1.09009 * 109.45480 * 290.13068 * 23 22 20 40 40 H 1.08990 * 109.44470 * 170.17581 * 23 22 20 41 41 H 1.09001 * 109.47981 * 169.77702 * 24 23 22 42 42 H 1.09001 * 109.48120 * 49.75686 * 24 23 22 43 43 H 1.09003 * 109.68410 * 283.58726 * 25 19 18 44 44 H 1.09007 * 109.68285 * 44.11161 * 25 19 18 45 45 H 0.96706 * 113.99955 * 180.14000 * 28 26 12 46 46 H 1.09004 * 109.58525 * 246.16048 * 29 9 7 47 47 H 1.08995 * 109.58430 * 6.43945 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2124 6 1 3.1038 1.6964 -1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0539 -1.2233 -0.2766 9 7 1.3717 -2.3613 0.3524 10 6 0.2275 -2.3357 1.2737 11 6 0.4938 -3.3040 2.4248 12 6 0.8147 -4.6893 1.8591 13 1 -0.0220 -5.0368 1.2532 14 7 1.0409 -5.6265 2.9622 15 6 -0.0044 -6.2470 3.5443 16 8 -1.1360 -6.0291 3.1532 17 6 0.2220 -7.1856 4.6482 18 6 -0.7446 -7.8750 5.3273 19 6 -0.0834 -8.6469 6.2850 20 6 1.2433 -8.3957 6.1634 21 8 1.4213 -7.5156 5.1756 22 6 2.3018 -9.0333 7.0312 23 6 1.6200 -9.6278 8.2692 24 6 0.4342 -10.4935 7.8352 25 6 -0.6832 -9.5936 7.2925 26 6 2.0734 -4.6090 0.9922 27 1 2.3148 -5.6004 0.6087 28 8 3.1639 -4.1228 1.7773 29 6 1.8216 -3.6549 -0.1795 30 1 -0.4850 0.8400 0.0004 31 1 0.0986 -1.3278 1.6683 32 1 -0.6750 -2.6411 0.7442 33 1 -0.3892 -3.3664 3.0609 34 1 1.3401 -2.9451 3.0105 35 1 1.9430 -5.8004 3.2737 36 1 -1.8099 -7.8324 5.1550 37 1 2.8055 -9.8236 6.4746 38 1 3.0274 -8.2801 7.3380 39 1 1.2650 -8.8211 8.9106 40 1 2.3350 -10.2402 8.8183 41 1 0.0633 -11.0574 8.6911 42 1 0.7548 -11.1848 7.0558 43 1 -1.1274 -9.0262 8.1104 44 1 -1.4473 -10.2050 6.8123 45 1 3.9954 -4.0444 1.2897 46 1 1.0518 -4.0702 -0.8300 47 1 2.7427 -3.5168 -0.7455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090320232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:52 Heat of formation + Delta-G solvation = -83.161645 kcal Electronic energy + Delta-G solvation = -29115.856902 eV Core-core repulsion = 25071.222920 eV Total energy + Delta-G solvation = -4044.633983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 16.03 seconds Orbital eigenvalues (eV) -43.90965 -41.08767 -39.47481 -38.06351 -36.62550 -35.84124 -34.09433 -33.74765 -31.96226 -31.13967 -30.70424 -29.92338 -27.16218 -25.35185 -24.09720 -23.83344 -23.31249 -22.73553 -21.71088 -21.14576 -20.00088 -19.13796 -18.74475 -17.64749 -17.61984 -17.37189 -16.97745 -16.57747 -16.00603 -15.95830 -15.52644 -15.44199 -15.42379 -14.99198 -14.75132 -14.58434 -14.46844 -14.08934 -13.82350 -13.77451 -13.69952 -13.50725 -13.08019 -13.01788 -12.80525 -12.68832 -12.47421 -12.14221 -12.11069 -11.92969 -11.76550 -11.74018 -11.63225 -11.45456 -11.29333 -10.91182 -10.75629 -10.52003 -10.19449 -9.37034 -8.69170 -7.87057 -5.31943 -0.06747 1.24743 1.46256 1.47614 1.50408 1.56324 2.01361 2.08050 2.51001 3.26979 3.34539 3.45634 3.62984 3.71908 3.75571 3.79515 3.99812 4.00548 4.11981 4.17956 4.22888 4.32358 4.38429 4.48346 4.59820 4.66218 4.68382 4.70489 4.83899 4.86319 4.90415 4.93575 4.97347 5.02841 5.07541 5.09231 5.19412 5.22867 5.33128 5.43724 5.45478 5.51887 5.61949 5.67086 5.83288 6.36837 6.40269 6.92985 6.98715 7.13131 7.82778 8.35395 9.20007 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025773 B = 0.002363 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.136165 B =11848.940625 C =12101.834084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.057 4.057 3 Si 0.969 3.031 4 H -0.298 1.298 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.254 4.254 8 H 0.074 0.926 9 N -0.598 5.598 10 C 0.183 3.817 11 C -0.127 4.127 12 C 0.166 3.834 13 H 0.081 0.919 14 N -0.696 5.696 15 C 0.598 3.402 16 O -0.562 6.562 17 C -0.107 4.107 18 C -0.114 4.114 19 C -0.201 4.201 20 C 0.020 3.980 21 O -0.163 6.163 22 C -0.042 4.042 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.052 4.052 26 C 0.099 3.901 27 H 0.086 0.914 28 O -0.564 6.564 29 C 0.112 3.888 30 H 0.249 0.751 31 H 0.055 0.945 32 H -0.005 1.005 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.415 0.585 36 H 0.159 0.841 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.391 0.609 46 H 0.026 0.974 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 -24.237 16.317 29.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.252 4.252 3 Si 0.797 3.203 4 H -0.225 1.225 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.057 3.943 11 C -0.167 4.167 12 C 0.061 3.939 13 H 0.099 0.901 14 N -0.345 5.345 15 C 0.386 3.614 16 O -0.443 6.443 17 C -0.158 4.158 18 C -0.135 4.135 19 C -0.203 4.203 20 C -0.033 4.033 21 O -0.059 6.059 22 C -0.079 4.079 23 C -0.151 4.151 24 C -0.158 4.158 25 C -0.089 4.089 26 C 0.038 3.962 27 H 0.104 0.896 28 O -0.372 6.372 29 C -0.014 4.014 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.013 0.987 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.252 0.748 36 H 0.177 0.823 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.241 0.759 46 H 0.044 0.956 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.635 -23.796 16.341 29.411 hybrid contribution 0.313 1.452 -0.777 1.676 sum 5.947 -22.343 15.564 27.872 Atomic orbital electron populations 1.70193 1.06836 1.25866 1.55602 1.25839 0.96005 1.01742 1.01579 0.85320 0.77474 0.79159 0.78355 1.22485 1.20657 1.19662 1.19477 0.93013 0.85740 1.40145 0.90820 1.44091 1.35356 1.02233 1.50424 1.20379 0.88078 0.97308 0.88562 1.22148 0.99975 0.95522 0.99032 1.20871 0.97433 0.88276 0.87272 0.90113 1.45898 1.09865 1.43255 1.35501 1.16845 0.84863 0.79133 0.80590 1.90858 1.23528 1.65628 1.64292 1.21787 0.83910 1.07211 1.02910 1.21838 1.00543 0.95872 0.95200 1.20536 0.92892 1.04487 1.02340 1.23649 0.97706 0.91736 0.90186 1.83886 1.31546 1.49498 1.40976 1.20639 0.93588 0.99918 0.93741 1.21646 0.98161 0.99965 0.95362 1.21665 0.94732 0.97511 1.01853 1.20234 0.98321 0.95078 0.95230 1.22365 0.86171 0.96653 0.90984 0.89625 1.86417 1.21092 1.89162 1.40509 1.21796 0.99185 0.86430 0.94010 0.94235 0.92613 0.98691 0.93770 0.92315 0.74801 0.82316 0.87377 0.88309 0.91440 0.87736 0.89060 0.91329 0.90071 0.90071 0.75929 0.95629 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 11.19 21.65 0.24 -56.90 16 2 C -0.06 -3.21 4.91 84.86 0.42 -2.80 16 3 Si 0.97 45.47 29.59 68.60 2.03 47.50 16 4 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.25 -13.81 9.58 84.03 0.81 -13.00 16 8 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 9 N -0.60 -30.02 2.94 -699.93 -2.06 -32.08 16 10 C 0.18 9.50 5.28 86.22 0.46 9.96 16 11 C -0.13 -5.52 5.50 30.53 0.17 -5.35 16 12 C 0.17 6.08 2.20 45.02 0.10 6.18 16 13 H 0.08 3.21 7.58 -2.39 -0.02 3.19 16 14 N -0.70 -22.39 5.05 -446.38 -2.25 -24.65 16 15 C 0.60 20.74 7.75 86.44 0.67 21.41 16 16 O -0.56 -23.34 16.53 -4.33 -0.07 -23.41 16 17 C -0.11 -3.14 7.14 24.13 0.17 -2.97 16 18 C -0.11 -2.97 10.60 22.27 0.24 -2.74 16 19 C -0.20 -4.08 5.93 -20.14 -0.12 -4.20 16 20 C 0.02 0.40 7.22 25.16 0.18 0.58 16 21 O -0.16 -4.14 10.39 -3.05 -0.03 -4.17 16 22 C -0.04 -0.44 6.30 30.05 0.19 -0.25 16 23 C -0.11 -0.78 5.89 30.74 0.18 -0.60 16 24 C -0.12 -0.93 5.91 30.76 0.18 -0.75 16 25 C -0.05 -0.66 6.28 29.98 0.19 -0.47 16 26 C 0.10 3.17 3.38 30.67 0.10 3.27 16 27 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 28 O -0.56 -17.38 12.09 -148.98 -1.80 -19.18 16 29 C 0.11 4.37 6.16 86.36 0.53 4.91 16 30 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.06 3.27 6.04 -2.38 -0.01 3.25 16 32 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 33 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.06 2.65 7.61 -2.39 -0.02 2.63 16 35 H 0.42 11.76 8.01 -92.70 -0.74 11.01 16 36 H 0.16 4.01 8.06 -2.91 -0.02 3.98 16 37 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 0.55 8.11 -2.38 -0.02 0.53 16 40 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.07 0.54 8.11 -2.39 -0.02 0.52 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.39 8.95 9.08 -74.05 -0.67 8.27 16 46 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.08 2.80 7.93 -2.39 -0.02 2.78 16 Total: -1.00 -74.02 377.28 0.10 -73.92 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.41 Total: 25.79 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 4.46 Total: 13.17 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -4.07 Total: -113.62 kcal Atomic # 8 Polarization: -44.86 SS G_CDS: -1.90 Total: -46.76 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -74.02 0.10 -73.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090320232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.240 kcal (2) G-P(sol) polarization free energy of solvation -74.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.04 seconds