Wall clock time and date at job start Tue Mar 31 2020 21:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 119.99891 * 2 1 4 4 H 1.48496 * 109.47383 * 240.00425 * 3 2 1 5 5 H 1.48501 * 109.47243 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47147 * 120.00588 * 3 2 1 7 7 C 1.38815 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99467 * 163.07992 * 7 2 1 9 9 N 1.36931 * 120.00151 * 343.08242 * 7 2 1 10 10 C 1.46929 * 120.63094 * 331.82805 * 9 7 2 11 11 C 1.53187 * 108.77665 * 233.58924 * 10 9 7 12 12 C 1.53045 * 109.31231 * 305.36342 * 11 10 9 13 13 H 1.08993 * 109.46521 * 301.35927 * 12 11 10 14 14 N 1.46500 * 109.45909 * 181.38552 * 12 11 10 15 15 C 1.34770 * 120.00275 * 84.97759 * 14 12 11 16 16 O 1.21699 * 119.99786 * 359.97438 * 15 14 12 17 17 C 1.46659 * 120.00479 * 179.97438 * 15 14 12 18 18 O 1.35282 * 126.09691 * 0.02562 * 17 15 14 19 19 C 1.34293 * 109.46030 * 179.97438 * 18 17 15 20 20 C 1.34219 * 108.57451 * 359.95779 * 19 18 17 21 21 C 1.35556 * 126.10382 * 179.97438 * 17 15 14 22 22 C 1.50659 * 129.37174 * 0.40800 * 21 17 15 23 23 C 1.53407 * 108.13835 * 163.43214 * 22 21 17 24 24 C 1.53015 * 109.83557 * 50.34541 * 23 22 21 25 25 C 1.50726 * 129.23935 * 180.31360 * 20 19 18 26 26 C 1.53043 * 109.52515 * 61.37375 * 12 11 10 27 27 H 1.09005 * 109.49881 * 58.58044 * 26 12 11 28 28 O 1.42898 * 109.49516 * 178.67533 * 26 12 11 29 29 C 1.46931 * 120.63161 * 151.80868 * 9 7 2 30 30 H 0.96998 * 120.00247 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.58415 * 113.80518 * 10 9 7 32 32 H 1.08997 * 109.58594 * 353.37907 * 10 9 7 33 33 H 1.09001 * 109.49821 * 185.41625 * 11 10 9 34 34 H 1.08998 * 109.52535 * 65.32934 * 11 10 9 35 35 H 0.97006 * 119.99857 * 264.97558 * 14 12 11 36 36 H 1.07999 * 125.71634 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.72984 * 283.05644 * 22 21 17 38 38 H 1.09006 * 109.73258 * 43.74828 * 22 21 17 39 39 H 1.09002 * 109.36306 * 290.25881 * 23 22 21 40 40 H 1.09000 * 109.43480 * 170.47714 * 23 22 21 41 41 H 1.08998 * 109.41581 * 168.21510 * 24 23 22 42 42 H 1.09004 * 109.41557 * 48.43290 * 24 23 22 43 43 H 1.08999 * 109.73123 * 282.97784 * 25 20 19 44 44 H 1.09009 * 109.72832 * 43.61071 * 25 20 19 45 45 H 0.96706 * 113.99675 * 180.02562 * 28 26 12 46 46 H 1.08995 * 109.58486 * 246.19824 * 29 9 7 47 47 H 1.08998 * 109.58452 * 6.47925 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2728 9 7 1.3700 -2.3625 0.3440 10 6 0.2261 -2.3411 1.2659 11 6 0.4975 -3.3213 2.4114 12 6 0.8119 -4.7025 1.8318 13 1 -0.0282 -5.0420 1.2261 14 7 1.0395 -5.6504 2.9254 15 6 -0.0052 -6.2735 3.5055 16 8 -1.1378 -6.0485 3.1212 17 6 0.2227 -7.2229 4.5999 18 8 1.4230 -7.5633 5.1227 19 6 1.2443 -8.4575 6.1086 20 6 -0.0699 -8.7012 6.2316 21 6 -0.7319 -7.9150 5.2687 22 6 -2.2264 -7.9097 5.0782 23 6 -2.8018 -9.1460 5.7809 24 6 -2.2676 -9.2251 7.2126 25 6 -0.7837 -9.6184 7.1914 26 6 2.0673 -4.6180 0.9607 27 1 2.9023 -4.2548 1.5600 28 8 2.3779 -5.9140 0.4448 29 6 1.8136 -3.6527 -0.2015 30 1 -0.4850 0.8400 0.0004 31 1 -0.6771 -2.6411 0.7345 32 1 0.0994 -1.3358 1.6676 33 1 -0.3830 -3.3868 3.0505 34 1 1.3472 -2.9707 2.9973 35 1 1.9422 -5.8295 3.2320 36 1 2.0268 -8.9054 6.7031 37 1 -2.6502 -7.0068 5.5176 38 1 -2.4619 -7.9477 4.0146 39 1 -2.5076 -10.0420 5.2344 40 1 -3.8894 -9.0771 5.8033 41 1 -2.8321 -9.9731 7.7692 42 1 -2.3804 -8.2544 7.6956 43 1 -0.6786 -10.6515 6.8602 44 1 -0.3608 -9.5073 8.1899 45 1 3.1644 -5.9353 -0.1174 46 1 1.0398 -4.0596 -0.8524 47 1 2.7329 -3.5124 -0.7700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090763120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:45 Heat of formation + Delta-G solvation = -63.106093 kcal Electronic energy + Delta-G solvation = -29352.032418 eV Core-core repulsion = 25308.268109 eV Total energy + Delta-G solvation = -4043.764309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -42.89299 -39.60554 -37.90632 -37.48713 -35.41048 -34.36204 -32.16366 -31.87358 -31.84087 -30.15626 -28.85902 -28.14238 -25.31112 -24.56829 -23.20619 -22.30417 -22.22541 -21.50843 -20.03165 -19.39121 -19.24374 -17.81275 -17.05166 -16.55578 -16.49966 -16.07644 -15.86463 -14.90707 -14.87197 -14.60281 -14.38409 -14.27638 -13.99372 -13.93284 -13.61880 -13.29401 -13.04436 -12.94831 -12.74244 -12.47752 -12.29368 -12.16226 -12.08036 -11.57704 -11.12396 -11.08424 -11.01870 -10.86803 -10.82985 -10.68933 -10.36044 -10.28994 -10.05172 -9.92847 -9.74127 -9.49646 -9.48627 -8.89927 -8.60812 -8.43960 -6.77790 -5.85522 -3.30181 1.06592 2.18788 2.66407 3.30749 3.34064 3.38458 3.41200 3.41852 4.27779 4.36105 4.49902 4.54769 4.60714 4.68228 4.99445 5.04858 5.15804 5.23719 5.28262 5.32006 5.35585 5.42561 5.47096 5.54173 5.65594 5.71991 5.75961 5.78838 5.86460 5.93002 5.96042 6.08406 6.09861 6.13240 6.27264 6.32321 6.47109 6.49660 6.64701 6.73306 6.76612 6.86894 7.27849 7.59304 7.68878 7.72104 7.91794 8.29306 8.37247 9.12425 9.74650 10.30752 11.23105 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.002566 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.887253 B =10909.826884 C =11338.205101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.147 4.147 12 C 0.162 3.838 13 H 0.091 0.909 14 N -0.704 5.704 15 C 0.599 3.401 16 O -0.519 6.519 17 C -0.066 4.066 18 O -0.167 6.167 19 C -0.008 4.008 20 C -0.192 4.192 21 C -0.089 4.089 22 C -0.055 4.055 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.048 4.048 26 C 0.080 3.920 27 H 0.057 0.943 28 O -0.571 6.571 29 C 0.121 3.879 30 H 0.256 0.744 31 H 0.025 0.975 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.401 0.599 36 H 0.206 0.794 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.374 0.626 46 H 0.030 0.970 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.063 -19.313 13.889 23.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.046 3.954 11 C -0.188 4.188 12 C 0.059 3.941 13 H 0.109 0.891 14 N -0.352 5.352 15 C 0.384 3.616 16 O -0.397 6.397 17 C -0.117 4.117 18 O -0.064 6.064 19 C -0.077 4.077 20 C -0.193 4.193 21 C -0.092 4.092 22 C -0.092 4.092 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.085 4.085 26 C 0.019 3.981 27 H 0.075 0.925 28 O -0.375 6.375 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.235 0.765 36 H 0.223 0.777 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.221 0.779 46 H 0.047 0.953 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.135 -19.009 13.795 23.487 hybrid contribution 1.475 0.843 -0.038 1.700 sum 1.340 -18.166 13.756 22.826 Atomic orbital electron populations 1.70021 1.05291 1.25895 1.53042 1.25084 0.95312 0.98543 1.00427 0.86338 0.78905 0.83159 0.78143 1.20812 1.21542 1.20956 1.19111 0.92529 0.84588 1.42776 0.91588 1.44039 1.35921 1.01201 1.50034 1.20830 0.88738 0.98227 0.87628 1.22628 1.01152 0.94184 1.00811 1.21092 0.97820 0.89015 0.86172 0.89140 1.46018 1.09115 1.43689 1.36407 1.16530 0.85451 0.79234 0.80336 1.90871 1.22035 1.63928 1.62898 1.21723 0.82937 1.05223 1.01861 1.84248 1.31604 1.49071 1.41463 1.23735 0.97678 0.93963 0.92366 1.20308 0.93282 1.03884 1.01851 1.20375 0.97044 0.96380 0.95371 1.20217 0.88242 0.98475 1.02245 1.21611 1.00203 0.98192 0.95633 1.21595 0.94927 1.01923 0.97178 1.20096 0.94623 0.97056 0.96744 1.22778 0.95929 0.83266 0.96133 0.92517 1.86488 1.50643 1.30464 1.69926 1.21526 0.98882 0.87372 0.92870 0.93353 0.95709 0.88838 0.91812 0.92249 0.76530 0.77703 0.90060 0.89346 0.91813 0.91305 0.91520 0.91618 0.90721 0.90813 0.77945 0.95253 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.80 11.20 55.49 0.62 -25.18 16 2 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 3 Si 0.91 21.28 29.59 -169.99 -5.03 16.25 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -6.96 9.58 -15.06 -0.14 -7.10 16 8 H 0.07 1.71 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -14.40 2.99 -172.32 -0.52 -14.91 16 10 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 11 C -0.15 -2.93 5.65 -26.61 -0.15 -3.09 16 12 C 0.16 2.99 2.12 -67.89 -0.14 2.85 16 13 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 14 N -0.70 -11.41 4.91 -55.08 -0.27 -11.68 16 15 C 0.60 10.20 7.75 -12.86 -0.10 10.10 16 16 O -0.52 -10.20 15.12 5.19 0.08 -10.12 16 17 C -0.07 -0.97 7.12 -37.14 -0.26 -1.23 16 18 O -0.17 -2.12 10.43 2.96 0.03 -2.09 16 19 C -0.01 -0.08 12.05 29.32 0.35 0.27 16 20 C -0.19 -2.01 5.92 -105.04 -0.62 -2.63 16 21 C -0.09 -1.17 5.95 -104.62 -0.62 -1.79 16 22 C -0.05 -0.66 5.40 -27.69 -0.15 -0.81 16 23 C -0.12 -1.06 5.86 -26.51 -0.16 -1.22 16 24 C -0.12 -0.91 5.86 -26.45 -0.16 -1.07 16 25 C -0.05 -0.36 6.30 -27.60 -0.17 -0.54 16 26 C 0.08 1.38 3.14 -26.61 -0.08 1.30 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 O -0.57 -8.74 13.16 -35.23 -0.46 -9.20 16 29 C 0.12 2.47 6.14 -3.71 -0.02 2.44 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 2.48 6.06 -51.93 -0.31 2.17 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 5.73 8.37 -40.82 -0.34 5.39 16 36 H 0.21 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.20 7.49 -51.93 -0.39 0.81 16 39 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 45 H 0.37 4.10 9.08 45.56 0.41 4.51 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 LS Contribution 376.18 15.07 5.67 5.67 Total: -1.00 -32.12 376.18 -8.90 -41.01 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.48 Total: 8.61 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.54 Total: 1.66 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.17 Total: -51.78 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.35 Total: -21.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.12 -8.90 -41.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090763120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.094 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds