Wall clock time and date at job start Tue Mar 31 2020 21:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 119.99891 * 2 1 4 4 H 1.48496 * 109.47383 * 240.00425 * 3 2 1 5 5 H 1.48501 * 109.47243 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47147 * 120.00588 * 3 2 1 7 7 C 1.38815 * 119.99751 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99467 * 163.07992 * 7 2 1 9 9 N 1.36931 * 120.00151 * 343.08242 * 7 2 1 10 10 C 1.46929 * 120.63094 * 331.82805 * 9 7 2 11 11 C 1.53187 * 108.77665 * 233.58924 * 10 9 7 12 12 C 1.53045 * 109.31231 * 305.36342 * 11 10 9 13 13 H 1.08993 * 109.46521 * 301.35927 * 12 11 10 14 14 N 1.46500 * 109.45909 * 181.38552 * 12 11 10 15 15 C 1.34770 * 120.00275 * 84.97759 * 14 12 11 16 16 O 1.21699 * 119.99786 * 359.97438 * 15 14 12 17 17 C 1.46659 * 120.00479 * 179.97438 * 15 14 12 18 18 O 1.35282 * 126.09691 * 0.02562 * 17 15 14 19 19 C 1.34293 * 109.46030 * 179.97438 * 18 17 15 20 20 C 1.34219 * 108.57451 * 359.95779 * 19 18 17 21 21 C 1.35556 * 126.10382 * 179.97438 * 17 15 14 22 22 C 1.50659 * 129.37174 * 0.40800 * 21 17 15 23 23 C 1.53407 * 108.13835 * 163.43214 * 22 21 17 24 24 C 1.53015 * 109.83557 * 50.34541 * 23 22 21 25 25 C 1.50726 * 129.23935 * 180.31360 * 20 19 18 26 26 C 1.53043 * 109.52515 * 61.37375 * 12 11 10 27 27 H 1.09005 * 109.49881 * 58.58044 * 26 12 11 28 28 O 1.42898 * 109.49516 * 178.67533 * 26 12 11 29 29 C 1.46931 * 120.63161 * 151.80868 * 9 7 2 30 30 H 0.96998 * 120.00247 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.58415 * 113.80518 * 10 9 7 32 32 H 1.08997 * 109.58594 * 353.37907 * 10 9 7 33 33 H 1.09001 * 109.49821 * 185.41625 * 11 10 9 34 34 H 1.08998 * 109.52535 * 65.32934 * 11 10 9 35 35 H 0.97006 * 119.99857 * 264.97558 * 14 12 11 36 36 H 1.07999 * 125.71634 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.72984 * 283.05644 * 22 21 17 38 38 H 1.09006 * 109.73258 * 43.74828 * 22 21 17 39 39 H 1.09002 * 109.36306 * 290.25881 * 23 22 21 40 40 H 1.09000 * 109.43480 * 170.47714 * 23 22 21 41 41 H 1.08998 * 109.41581 * 168.21510 * 24 23 22 42 42 H 1.09004 * 109.41557 * 48.43290 * 24 23 22 43 43 H 1.08999 * 109.73123 * 282.97784 * 25 20 19 44 44 H 1.09009 * 109.72832 * 43.61071 * 25 20 19 45 45 H 0.96706 * 113.99675 * 180.02562 * 28 26 12 46 46 H 1.08995 * 109.58486 * 246.19824 * 29 9 7 47 47 H 1.08998 * 109.58452 * 6.47925 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2728 9 7 1.3700 -2.3625 0.3440 10 6 0.2261 -2.3411 1.2659 11 6 0.4975 -3.3213 2.4114 12 6 0.8119 -4.7025 1.8318 13 1 -0.0282 -5.0420 1.2261 14 7 1.0395 -5.6504 2.9254 15 6 -0.0052 -6.2735 3.5055 16 8 -1.1378 -6.0485 3.1212 17 6 0.2227 -7.2229 4.5999 18 8 1.4230 -7.5633 5.1227 19 6 1.2443 -8.4575 6.1086 20 6 -0.0699 -8.7012 6.2316 21 6 -0.7319 -7.9150 5.2687 22 6 -2.2264 -7.9097 5.0782 23 6 -2.8018 -9.1460 5.7809 24 6 -2.2676 -9.2251 7.2126 25 6 -0.7837 -9.6184 7.1914 26 6 2.0673 -4.6180 0.9607 27 1 2.9023 -4.2548 1.5600 28 8 2.3779 -5.9140 0.4448 29 6 1.8136 -3.6527 -0.2015 30 1 -0.4850 0.8400 0.0004 31 1 -0.6771 -2.6411 0.7345 32 1 0.0994 -1.3358 1.6676 33 1 -0.3830 -3.3868 3.0505 34 1 1.3472 -2.9707 2.9973 35 1 1.9422 -5.8295 3.2320 36 1 2.0268 -8.9054 6.7031 37 1 -2.6502 -7.0068 5.5176 38 1 -2.4619 -7.9477 4.0146 39 1 -2.5076 -10.0420 5.2344 40 1 -3.8894 -9.0771 5.8033 41 1 -2.8321 -9.9731 7.7692 42 1 -2.3804 -8.2544 7.6956 43 1 -0.6786 -10.6515 6.8602 44 1 -0.3608 -9.5073 8.1899 45 1 3.1644 -5.9353 -0.1174 46 1 1.0398 -4.0596 -0.8524 47 1 2.7329 -3.5124 -0.7700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090763120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:44 Heat of formation + Delta-G solvation = -86.076185 kcal Electronic energy + Delta-G solvation = -29353.028476 eV Core-core repulsion = 25308.268109 eV Total energy + Delta-G solvation = -4044.760367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.80160 -41.02752 -39.40242 -38.26867 -37.00888 -35.85974 -33.85242 -32.87451 -32.70006 -31.83706 -30.36761 -29.29080 -27.06834 -25.39352 -24.60402 -23.89367 -23.06774 -22.99194 -21.47279 -20.81070 -20.05582 -19.10790 -18.59394 -18.05765 -17.52234 -17.32259 -17.05639 -16.72107 -15.83981 -15.77393 -15.68314 -15.53285 -15.35025 -15.08974 -14.96755 -14.73472 -14.51889 -13.95114 -13.87099 -13.74031 -13.64080 -13.30159 -13.21424 -13.02103 -12.95049 -12.69559 -12.43972 -12.17246 -12.10256 -11.92645 -11.82805 -11.74289 -11.56059 -11.42275 -11.18089 -11.04342 -10.59170 -10.39647 -10.17962 -9.54178 -8.78161 -7.91349 -5.39419 0.02834 1.35084 1.48000 1.50669 1.57451 1.65238 2.06558 2.17683 2.48531 3.08165 3.25847 3.48427 3.59696 3.68031 3.82327 3.83646 4.00521 4.00881 4.16607 4.17887 4.29042 4.35109 4.39215 4.49028 4.51809 4.61509 4.63730 4.72154 4.80268 4.87368 4.93797 4.97423 5.00887 5.04395 5.09322 5.15192 5.22385 5.28306 5.32577 5.36123 5.43817 5.51729 5.58219 5.63846 5.86475 6.32652 6.43200 6.85390 7.00766 7.08146 7.76151 8.29324 9.16064 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021923 B = 0.002566 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.887253 B =10909.826884 C =11338.205101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.267 4.267 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.182 3.818 11 C -0.130 4.130 12 C 0.170 3.830 13 H 0.061 0.939 14 N -0.694 5.694 15 C 0.596 3.404 16 O -0.558 6.558 17 C -0.104 4.104 18 O -0.174 6.174 19 C 0.013 3.987 20 C -0.204 4.204 21 C -0.092 4.092 22 C -0.059 4.059 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.045 4.045 26 C 0.102 3.898 27 H 0.073 0.927 28 O -0.571 6.571 29 C 0.119 3.881 30 H 0.251 0.749 31 H -0.006 1.006 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.413 0.587 36 H 0.255 0.745 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.397 0.603 46 H 0.013 0.987 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.573 -21.581 16.104 27.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.397 4.397 8 H 0.095 0.905 9 N -0.328 5.328 10 C 0.055 3.945 11 C -0.170 4.170 12 C 0.065 3.935 13 H 0.079 0.921 14 N -0.343 5.343 15 C 0.384 3.616 16 O -0.439 6.439 17 C -0.155 4.155 18 O -0.071 6.071 19 C -0.055 4.055 20 C -0.205 4.205 21 C -0.095 4.095 22 C -0.096 4.096 23 C -0.152 4.152 24 C -0.156 4.156 25 C -0.082 4.082 26 C 0.041 3.959 27 H 0.091 0.909 28 O -0.379 6.379 29 C -0.008 4.008 30 H 0.060 0.940 31 H 0.012 0.988 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.249 0.751 36 H 0.271 0.729 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.076 0.924 43 H 0.108 0.892 44 H 0.115 0.885 45 H 0.247 0.753 46 H 0.031 0.969 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.437 -21.320 16.005 26.771 hybrid contribution 0.691 1.419 -0.726 1.737 sum 3.128 -19.901 15.279 25.285 Atomic orbital electron populations 1.70196 1.06931 1.26187 1.54864 1.25907 0.96012 1.01881 1.00798 0.85277 0.77473 0.78768 0.78524 1.19793 1.22359 1.20119 1.19528 0.93106 0.85433 1.41640 0.90526 1.44247 1.35704 1.02293 1.50558 1.20534 0.87928 0.97523 0.88505 1.22346 1.01255 0.94299 0.99096 1.20749 0.97675 0.88308 0.86735 0.92086 1.45777 1.09727 1.43102 1.35731 1.16866 0.84892 0.79260 0.80612 1.90842 1.23429 1.65353 1.64313 1.21222 0.84369 1.06875 1.02995 1.84228 1.30582 1.49947 1.42330 1.24756 0.98774 0.91524 0.90474 1.20707 0.93653 1.04233 1.01951 1.20747 0.97241 0.95986 0.95488 1.20235 0.88460 0.99838 1.01111 1.21604 1.00749 0.96349 0.96476 1.21617 0.95650 1.02341 0.95968 1.20221 0.93910 0.96955 0.97121 1.22314 0.95554 0.83368 0.94643 0.90894 1.86463 1.52242 1.28716 1.70469 1.21683 0.98872 0.86190 0.94051 0.93975 0.98818 0.91771 0.92364 0.91261 0.75081 0.72896 0.91073 0.91826 0.91580 0.90331 0.89110 0.92441 0.89237 0.88483 0.75298 0.96855 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.81 11.20 21.65 0.24 -55.57 16 2 C -0.05 -2.78 4.92 84.86 0.42 -2.37 16 3 Si 0.97 44.14 29.59 68.60 2.03 46.17 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.27 -14.32 9.58 84.04 0.81 -13.51 16 8 H 0.08 3.87 7.88 -2.91 -0.02 3.85 16 9 N -0.60 -30.10 2.99 -699.11 -2.09 -32.19 16 10 C 0.18 9.14 5.30 86.36 0.46 9.60 16 11 C -0.13 -5.34 5.65 30.67 0.17 -5.17 16 12 C 0.17 6.38 2.12 45.02 0.10 6.48 16 13 H 0.06 2.67 7.58 -2.39 -0.02 2.66 16 14 N -0.69 -22.58 4.91 -446.39 -2.19 -24.77 16 15 C 0.60 20.98 7.75 86.44 0.67 21.65 16 16 O -0.56 -23.40 15.12 -4.35 -0.07 -23.46 16 17 C -0.10 -3.03 7.12 23.85 0.17 -2.86 16 18 O -0.17 -4.06 10.43 -12.32 -0.13 -4.19 16 19 C 0.01 0.21 12.05 66.90 0.81 1.01 16 20 C -0.20 -3.72 5.92 -20.14 -0.12 -3.84 16 21 C -0.09 -2.37 5.95 -19.86 -0.12 -2.49 16 22 C -0.06 -1.48 5.40 29.97 0.16 -1.32 16 23 C -0.11 -1.92 5.86 30.74 0.18 -1.74 16 24 C -0.12 -1.50 5.86 30.78 0.18 -1.32 16 25 C -0.05 -0.51 6.30 30.03 0.19 -0.32 16 26 C 0.10 3.43 3.14 30.67 0.10 3.52 16 27 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 28 O -0.57 -16.38 13.16 -148.98 -1.96 -18.34 16 29 C 0.12 4.81 6.14 86.36 0.53 5.34 16 30 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 31 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 32 H 0.06 3.60 6.06 -2.39 -0.01 3.58 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.41 11.33 8.37 -92.70 -0.78 10.56 16 36 H 0.26 1.20 8.06 -2.91 -0.02 1.17 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 1.87 7.49 -2.38 -0.02 1.86 16 39 H 0.07 1.08 8.10 -2.39 -0.02 1.06 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 0.83 8.10 -2.38 -0.02 0.81 16 43 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.40 7.52 9.08 -74.05 -0.67 6.84 16 46 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.08 2.86 7.93 -2.39 -0.02 2.84 16 Total: -1.00 -73.57 376.18 0.08 -73.48 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.45 Total: 26.21 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 4.70 Total: 12.66 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -4.04 Total: -112.53 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -2.15 Total: -45.99 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -73.57 0.08 -73.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090763120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.592 kcal (2) G-P(sol) polarization free energy of solvation -73.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds