Wall clock time and date at job start Tue Mar 31 2020 21:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99826 * 2 1 4 4 H 1.48499 * 109.47184 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47205 * 119.99867 * 3 2 1 6 6 H 1.48499 * 109.46877 * 239.99780 * 3 2 1 7 7 C 1.38808 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00418 * 162.64382 * 7 2 1 9 9 N 1.36940 * 119.99786 * 342.64662 * 7 2 1 10 10 C 1.46923 * 120.62812 * 152.04325 * 9 7 2 11 11 C 1.53631 * 108.54036 * 126.37121 * 10 9 7 12 12 C 1.53038 * 109.24213 * 54.85570 * 11 10 9 13 13 H 1.08997 * 109.45239 * 58.52744 * 12 11 10 14 14 N 1.46504 * 109.45612 * 178.48890 * 12 11 10 15 15 C 1.34775 * 119.99908 * 275.06643 * 14 12 11 16 16 O 1.21688 * 120.00284 * 359.97438 * 15 14 12 17 17 C 1.46663 * 119.99495 * 180.02562 * 15 14 12 18 18 O 1.35281 * 126.10248 * 359.69130 * 17 15 14 19 19 C 1.34293 * 109.46034 * 179.88470 * 18 17 15 20 20 C 1.34224 * 108.57448 * 0.32788 * 19 18 17 21 21 C 1.35556 * 126.09687 * 179.97438 * 17 15 14 22 22 C 1.50653 * 129.37666 * 0.15341 * 21 17 15 23 23 C 1.53446 * 108.11851 * 163.34470 * 22 21 17 24 24 C 1.53011 * 109.80572 * 50.45671 * 23 22 21 25 25 C 1.50721 * 129.24035 * 179.97438 * 20 19 18 26 26 C 1.53041 * 109.53719 * 298.50741 * 12 11 10 27 27 H 1.08999 * 109.49799 * 301.41881 * 26 12 11 28 28 O 1.42899 * 109.52332 * 181.33213 * 26 12 11 29 29 C 1.46928 * 120.62959 * 332.32286 * 9 7 2 30 30 H 0.97006 * 120.00347 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.59145 * 246.19919 * 10 9 7 32 32 H 1.08998 * 109.59312 * 6.63045 * 10 9 7 33 33 H 1.08994 * 109.63234 * 294.85668 * 11 10 9 34 34 H 1.09007 * 109.45605 * 174.74083 * 11 10 9 35 35 H 0.97006 * 119.99637 * 95.07189 * 14 12 11 36 36 H 1.07998 * 125.71778 * 180.08876 * 19 18 17 37 37 H 1.09007 * 109.73106 * 283.00046 * 22 21 17 38 38 H 1.09001 * 109.73144 * 43.63455 * 22 21 17 39 39 H 1.09005 * 109.41356 * 170.55838 * 23 22 21 40 40 H 1.09000 * 109.41150 * 290.35366 * 23 22 21 41 41 H 1.08993 * 109.41306 * 48.42315 * 24 23 22 42 42 H 1.09001 * 109.41208 * 168.28211 * 24 23 22 43 43 H 1.08999 * 109.73796 * 43.62408 * 25 20 19 44 44 H 1.09006 * 109.76514 * 282.96515 * 25 20 19 45 45 H 0.96695 * 113.99951 * 180.14909 * 28 26 12 46 46 H 1.08999 * 109.58917 * 353.37583 * 29 9 7 47 47 H 1.09003 * 109.58668 * 113.65751 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2235 -0.2784 9 7 1.3723 -2.3609 0.3548 10 6 1.8157 -3.6540 -0.1835 11 6 2.0740 -4.6096 0.9914 12 6 0.8183 -4.6890 1.8625 13 1 -0.0207 -5.0356 1.2591 14 7 1.0472 -5.6269 2.9644 15 6 0.8468 -6.9466 2.7787 16 8 0.4751 -7.3592 1.6959 17 6 1.0755 -7.8854 3.8820 18 8 1.4915 -7.5643 5.1286 19 6 1.5870 -8.6801 5.8697 20 6 1.2414 -9.7300 5.1082 21 6 0.9128 -9.2303 3.8331 22 6 0.4745 -10.0987 2.6827 23 6 0.8508 -11.5499 3.0099 24 6 0.3450 -11.9142 4.4073 25 6 1.1851 -11.1923 5.4693 26 6 0.5005 -3.3036 2.4298 27 1 1.3491 -2.9457 3.0128 28 8 -0.6541 -3.3841 3.2679 29 6 0.2277 -2.3339 1.2756 30 1 -0.4851 0.8401 -0.0004 31 1 1.0404 -4.0662 -0.8295 32 1 2.7345 -3.5170 -0.7537 33 1 2.9079 -4.2395 1.5879 34 1 2.3136 -5.6011 0.6071 35 1 1.3430 -5.2979 3.8277 36 1 1.8946 -8.7257 6.9040 37 1 -0.6047 -10.0189 2.5517 38 1 0.9801 -9.7834 1.7700 39 1 0.3979 -12.2161 2.2756 40 1 1.9348 -11.6593 2.9770 41 1 -0.6982 -11.6138 4.5047 42 1 0.4270 -12.9913 4.5529 43 1 0.7213 -11.3120 6.4484 44 1 2.1931 -11.6068 5.4865 45 1 -0.9148 -2.5397 3.6605 46 1 0.0984 -1.3254 1.6684 47 1 -0.6749 -2.6380 0.7456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090763123.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:45 Heat of formation + Delta-G solvation = -63.728394 kcal Electronic energy + Delta-G solvation = -29356.514260 eV Core-core repulsion = 25312.722966 eV Total energy + Delta-G solvation = -4043.791294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.90364 -39.60304 -37.85387 -37.49653 -35.26733 -34.39057 -32.29094 -31.94417 -31.87851 -29.77960 -28.92404 -28.26273 -25.32057 -24.58328 -23.24777 -22.27083 -22.23668 -21.48897 -20.03132 -19.38057 -19.25686 -17.82648 -16.88844 -16.59801 -16.50612 -16.07574 -15.90924 -14.91730 -14.88069 -14.60296 -14.43600 -14.23957 -14.00998 -13.81747 -13.58966 -13.31573 -13.11605 -12.96604 -12.64333 -12.49290 -12.21531 -12.17123 -11.99457 -11.68424 -11.23251 -11.10076 -11.03402 -10.85553 -10.82361 -10.79318 -10.43790 -10.23573 -10.10379 -10.00006 -9.58617 -9.50044 -9.37374 -8.91378 -8.61636 -8.50966 -6.79377 -5.87871 -3.31495 1.05264 2.17557 2.65602 3.28489 3.32868 3.38037 3.39715 3.40594 4.26470 4.40384 4.53030 4.53517 4.62647 4.67016 4.98113 5.03348 5.14402 5.22290 5.28958 5.33823 5.37935 5.41355 5.44941 5.58747 5.63979 5.70570 5.77721 5.84712 5.90824 5.91536 5.98064 6.07035 6.08292 6.11104 6.19421 6.30216 6.41813 6.44126 6.68774 6.71769 6.83763 6.90577 7.10915 7.44734 7.67631 7.71950 8.09556 8.27357 8.35467 9.10299 9.73140 10.29352 11.20500 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028694 B = 0.002465 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.591419 B =11355.299879 C =11671.757868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.257 4.257 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.140 4.140 12 C 0.162 3.838 13 H 0.091 0.909 14 N -0.703 5.703 15 C 0.599 3.401 16 O -0.522 6.522 17 C -0.066 4.066 18 O -0.167 6.167 19 C -0.008 4.008 20 C -0.192 4.192 21 C -0.089 4.089 22 C -0.055 4.055 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.048 4.048 26 C 0.072 3.928 27 H 0.052 0.948 28 O -0.573 6.573 29 C 0.148 3.852 30 H 0.256 0.744 31 H 0.025 0.975 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.402 0.598 36 H 0.207 0.793 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.376 0.624 46 H 0.094 0.906 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.302 -20.180 12.988 24.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.208 1.208 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.019 3.981 11 C -0.180 4.180 12 C 0.058 3.942 13 H 0.109 0.891 14 N -0.351 5.351 15 C 0.385 3.615 16 O -0.400 6.400 17 C -0.118 4.118 18 O -0.063 6.063 19 C -0.077 4.077 20 C -0.194 4.194 21 C -0.092 4.092 22 C -0.092 4.092 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.085 4.085 26 C 0.011 3.989 27 H 0.070 0.930 28 O -0.377 6.377 29 C 0.021 3.979 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.236 0.764 36 H 0.223 0.777 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.223 0.777 46 H 0.112 0.888 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.006 -20.619 12.082 23.982 hybrid contribution 0.551 1.594 0.780 1.858 sum 2.557 -19.025 12.863 23.107 Atomic orbital electron populations 1.70017 1.05269 1.25840 1.53484 1.25080 0.95318 0.98568 1.00635 0.86341 0.78917 0.83135 0.78220 1.21584 1.20989 1.20754 1.19165 0.92843 0.84661 1.41928 0.91375 1.44024 1.35720 1.01864 1.49695 1.21029 0.98296 0.86268 0.92555 1.22511 0.96551 1.00358 0.98623 1.21080 0.98866 0.87011 0.87211 0.89135 1.46041 1.67292 1.05783 1.16007 1.16541 0.78106 0.81648 0.85231 1.90855 1.47471 1.77662 1.24013 1.21721 1.10608 0.94592 0.84861 1.84253 1.66989 1.34486 1.20609 1.23745 1.03619 0.82870 0.97442 1.20305 1.07881 0.97167 0.94001 1.20371 1.00443 0.91924 0.96456 1.20220 1.01679 0.92202 0.95050 1.21615 1.01350 0.95958 0.96698 1.21581 0.99865 0.99651 0.94536 1.20081 1.00620 0.88931 0.98898 1.22976 0.87161 0.95262 0.93465 0.92959 1.86417 1.48267 1.36581 1.66468 1.21422 0.89823 0.98252 0.88391 0.93405 0.95703 0.92015 0.91903 0.91737 0.76425 0.77690 0.90114 0.89349 0.91320 0.91789 0.91642 0.91512 0.90794 0.90725 0.77687 0.88752 0.95149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.45 11.19 55.49 0.62 -24.83 16 2 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.83 9.58 -15.06 -0.14 -6.98 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -14.39 2.99 -172.05 -0.51 -14.90 16 10 C 0.15 3.06 6.54 -3.48 -0.02 3.03 16 11 C -0.14 -2.55 5.67 -26.38 -0.15 -2.70 16 12 C 0.16 2.98 2.12 -67.89 -0.14 2.83 16 13 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 14 N -0.70 -11.39 4.91 -55.08 -0.27 -11.66 16 15 C 0.60 10.05 7.75 -12.86 -0.10 9.95 16 16 O -0.52 -9.98 15.11 5.20 0.08 -9.90 16 17 C -0.07 -0.96 7.12 -37.14 -0.26 -1.23 16 18 O -0.17 -2.11 10.43 2.96 0.03 -2.08 16 19 C -0.01 -0.07 12.05 29.32 0.35 0.28 16 20 C -0.19 -1.99 5.92 -105.04 -0.62 -2.61 16 21 C -0.09 -1.15 5.94 -104.62 -0.62 -1.77 16 22 C -0.05 -0.64 5.40 -27.67 -0.15 -0.79 16 23 C -0.12 -1.03 5.86 -26.49 -0.16 -1.19 16 24 C -0.12 -0.89 5.86 -26.49 -0.16 -1.04 16 25 C -0.05 -0.36 6.30 -27.64 -0.17 -0.53 16 26 C 0.07 1.36 3.14 -26.61 -0.08 1.28 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 O -0.57 -9.97 13.16 -35.23 -0.46 -10.44 16 29 C 0.15 3.42 4.93 -3.71 -0.02 3.40 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.40 5.84 8.37 -40.82 -0.34 5.50 16 36 H 0.21 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.16 7.48 -51.93 -0.39 0.77 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 41 H 0.06 0.53 8.10 -51.93 -0.42 0.10 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.38 5.24 9.08 45.56 0.41 5.65 16 46 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 47 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 376.17 15.07 5.67 5.67 Total: -1.00 -31.63 376.17 -8.89 -40.52 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.48 Total: 9.65 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -2.54 Total: 1.93 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.16 Total: -51.40 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.35 Total: -22.42 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.63 -8.89 -40.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090763123.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.211 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds