Wall clock time and date at job start Tue Mar 31 2020 21:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99826 * 2 1 4 4 H 1.48499 * 109.47184 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47205 * 119.99867 * 3 2 1 6 6 H 1.48499 * 109.46877 * 239.99780 * 3 2 1 7 7 C 1.38808 * 120.00335 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00418 * 162.64382 * 7 2 1 9 9 N 1.36940 * 119.99786 * 342.64662 * 7 2 1 10 10 C 1.46923 * 120.62812 * 152.04325 * 9 7 2 11 11 C 1.53631 * 108.54036 * 126.37121 * 10 9 7 12 12 C 1.53038 * 109.24213 * 54.85570 * 11 10 9 13 13 H 1.08997 * 109.45239 * 58.52744 * 12 11 10 14 14 N 1.46504 * 109.45612 * 178.48890 * 12 11 10 15 15 C 1.34775 * 119.99908 * 275.06643 * 14 12 11 16 16 O 1.21688 * 120.00284 * 359.97438 * 15 14 12 17 17 C 1.46663 * 119.99495 * 180.02562 * 15 14 12 18 18 O 1.35281 * 126.10248 * 359.69130 * 17 15 14 19 19 C 1.34293 * 109.46034 * 179.88470 * 18 17 15 20 20 C 1.34224 * 108.57448 * 0.32788 * 19 18 17 21 21 C 1.35556 * 126.09687 * 179.97438 * 17 15 14 22 22 C 1.50653 * 129.37666 * 0.15341 * 21 17 15 23 23 C 1.53446 * 108.11851 * 163.34470 * 22 21 17 24 24 C 1.53011 * 109.80572 * 50.45671 * 23 22 21 25 25 C 1.50721 * 129.24035 * 179.97438 * 20 19 18 26 26 C 1.53041 * 109.53719 * 298.50741 * 12 11 10 27 27 H 1.08999 * 109.49799 * 301.41881 * 26 12 11 28 28 O 1.42899 * 109.52332 * 181.33213 * 26 12 11 29 29 C 1.46928 * 120.62959 * 332.32286 * 9 7 2 30 30 H 0.97006 * 120.00347 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.59145 * 246.19919 * 10 9 7 32 32 H 1.08998 * 109.59312 * 6.63045 * 10 9 7 33 33 H 1.08994 * 109.63234 * 294.85668 * 11 10 9 34 34 H 1.09007 * 109.45605 * 174.74083 * 11 10 9 35 35 H 0.97006 * 119.99637 * 95.07189 * 14 12 11 36 36 H 1.07998 * 125.71778 * 180.08876 * 19 18 17 37 37 H 1.09007 * 109.73106 * 283.00046 * 22 21 17 38 38 H 1.09001 * 109.73144 * 43.63455 * 22 21 17 39 39 H 1.09005 * 109.41356 * 170.55838 * 23 22 21 40 40 H 1.09000 * 109.41150 * 290.35366 * 23 22 21 41 41 H 1.08993 * 109.41306 * 48.42315 * 24 23 22 42 42 H 1.09001 * 109.41208 * 168.28211 * 24 23 22 43 43 H 1.08999 * 109.73796 * 43.62408 * 25 20 19 44 44 H 1.09006 * 109.76514 * 282.96515 * 25 20 19 45 45 H 0.96695 * 113.99951 * 180.14909 * 28 26 12 46 46 H 1.08999 * 109.58917 * 353.37583 * 29 9 7 47 47 H 1.09003 * 109.58668 * 113.65751 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2235 -0.2784 9 7 1.3723 -2.3609 0.3548 10 6 1.8157 -3.6540 -0.1835 11 6 2.0740 -4.6096 0.9914 12 6 0.8183 -4.6890 1.8625 13 1 -0.0207 -5.0356 1.2591 14 7 1.0472 -5.6269 2.9644 15 6 0.8468 -6.9466 2.7787 16 8 0.4751 -7.3592 1.6959 17 6 1.0755 -7.8854 3.8820 18 8 1.4915 -7.5643 5.1286 19 6 1.5870 -8.6801 5.8697 20 6 1.2414 -9.7300 5.1082 21 6 0.9128 -9.2303 3.8331 22 6 0.4745 -10.0987 2.6827 23 6 0.8508 -11.5499 3.0099 24 6 0.3450 -11.9142 4.4073 25 6 1.1851 -11.1923 5.4693 26 6 0.5005 -3.3036 2.4298 27 1 1.3491 -2.9457 3.0128 28 8 -0.6541 -3.3841 3.2679 29 6 0.2277 -2.3339 1.2756 30 1 -0.4851 0.8401 -0.0004 31 1 1.0404 -4.0662 -0.8295 32 1 2.7345 -3.5170 -0.7537 33 1 2.9079 -4.2395 1.5879 34 1 2.3136 -5.6011 0.6071 35 1 1.3430 -5.2979 3.8277 36 1 1.8946 -8.7257 6.9040 37 1 -0.6047 -10.0189 2.5517 38 1 0.9801 -9.7834 1.7700 39 1 0.3979 -12.2161 2.2756 40 1 1.9348 -11.6593 2.9770 41 1 -0.6982 -11.6138 4.5047 42 1 0.4270 -12.9913 4.5529 43 1 0.7213 -11.3120 6.4484 44 1 2.1931 -11.6068 5.4865 45 1 -0.9148 -2.5397 3.6605 46 1 0.0984 -1.3254 1.6684 47 1 -0.6749 -2.6380 0.7456 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090763123.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:44 Heat of formation + Delta-G solvation = -85.933763 kcal Electronic energy + Delta-G solvation = -29357.477157 eV Core-core repulsion = 25312.722966 eV Total energy + Delta-G solvation = -4044.754191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 11.59 seconds Orbital eigenvalues (eV) -43.79873 -41.01606 -39.38628 -38.26484 -36.92297 -35.90902 -34.01576 -32.85829 -32.69547 -31.42124 -30.58103 -29.32457 -27.06809 -25.39161 -24.64250 -23.83981 -23.05112 -22.97840 -21.43051 -20.81395 -20.05223 -19.12902 -18.52506 -18.15677 -17.46419 -17.43964 -17.00582 -16.67717 -15.87463 -15.73405 -15.59469 -15.51564 -15.34144 -15.07733 -15.02595 -14.73332 -14.46923 -13.91129 -13.86149 -13.73676 -13.58626 -13.38860 -13.20577 -13.07439 -12.95470 -12.63071 -12.59085 -12.14443 -12.06693 -11.92102 -11.83859 -11.73281 -11.55921 -11.42351 -11.14763 -10.96757 -10.61232 -10.39860 -10.19472 -9.54083 -8.78529 -7.91904 -5.39270 0.03212 1.35213 1.48902 1.50066 1.57591 1.66149 2.06850 2.18054 2.48944 3.07098 3.25309 3.48992 3.60170 3.68048 3.83271 3.86927 4.00690 4.01659 4.17524 4.27022 4.29937 4.36823 4.39599 4.41224 4.52546 4.61963 4.64518 4.72867 4.82683 4.88401 4.94324 5.01169 5.01576 5.04760 5.12771 5.15830 5.22797 5.28505 5.29819 5.34350 5.44488 5.51720 5.54195 5.62505 5.87014 6.31779 6.43253 6.78798 6.99917 7.08362 7.75716 8.29007 9.14763 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028694 B = 0.002465 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.591419 B =11355.299879 C =11671.757868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.048 4.048 3 Si 0.971 3.029 4 H -0.295 1.295 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.268 4.268 8 H 0.073 0.927 9 N -0.604 5.604 10 C 0.143 3.857 11 C -0.124 4.124 12 C 0.170 3.830 13 H 0.061 0.939 14 N -0.696 5.696 15 C 0.597 3.403 16 O -0.557 6.557 17 C -0.104 4.104 18 O -0.175 6.175 19 C 0.012 3.988 20 C -0.204 4.204 21 C -0.091 4.091 22 C -0.059 4.059 23 C -0.114 4.114 24 C -0.119 4.119 25 C -0.046 4.046 26 C 0.092 3.908 27 H 0.065 0.935 28 O -0.574 6.574 29 C 0.158 3.842 30 H 0.252 0.748 31 H 0.012 0.988 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.412 0.588 36 H 0.254 0.746 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.393 0.607 46 H 0.073 0.927 47 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.934 -21.856 15.758 27.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.798 3.202 4 H -0.221 1.221 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.397 4.397 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.017 3.983 11 C -0.164 4.164 12 C 0.065 3.935 13 H 0.080 0.920 14 N -0.344 5.344 15 C 0.385 3.615 16 O -0.437 6.437 17 C -0.155 4.155 18 O -0.072 6.072 19 C -0.057 4.057 20 C -0.205 4.205 21 C -0.094 4.094 22 C -0.096 4.096 23 C -0.152 4.152 24 C -0.156 4.156 25 C -0.082 4.082 26 C 0.031 3.969 27 H 0.083 0.917 28 O -0.381 6.381 29 C 0.031 3.969 30 H 0.061 0.939 31 H 0.030 0.970 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.248 0.752 36 H 0.270 0.730 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.242 0.758 46 H 0.091 0.909 47 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 3.654 -22.308 14.883 27.065 hybrid contribution 0.002 2.020 -0.060 2.021 sum 3.656 -20.288 14.823 25.391 Atomic orbital electron populations 1.70178 1.06726 1.26219 1.54901 1.25847 0.96036 1.01657 1.00795 0.85297 0.77524 0.78874 0.78470 1.22118 1.20012 1.20234 1.19517 0.93232 0.85594 1.41381 0.90925 1.44270 1.35745 1.02486 1.50406 1.21122 0.98034 0.85536 0.93635 1.22303 0.96697 0.99845 0.97522 1.20770 0.97934 0.87137 0.87638 0.92036 1.45814 1.67415 1.05459 1.15746 1.16833 0.77228 0.81796 0.85612 1.90826 1.49026 1.78235 1.25663 1.21252 1.14264 0.94508 0.85498 1.84233 1.67159 1.35856 1.19978 1.24747 1.00700 0.81588 0.98622 1.20707 1.07951 0.99147 0.92717 1.20749 0.99068 0.91650 0.97910 1.20246 1.00772 0.94413 0.94149 1.21608 1.01610 0.93723 0.98224 1.21605 0.99333 1.01164 0.93504 1.20206 1.01658 0.86644 0.99736 1.22562 0.87945 0.94332 0.92023 0.91687 1.86399 1.47771 1.37979 1.65979 1.21218 0.88430 0.98062 0.89234 0.93861 0.96995 0.91259 0.90769 0.90989 0.75224 0.73035 0.91090 0.91558 0.90267 0.91545 0.92465 0.89131 0.88567 0.89255 0.75785 0.90912 0.98471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.14 11.19 21.65 0.24 -53.90 16 2 C -0.05 -2.59 4.91 84.86 0.42 -2.18 16 3 Si 0.97 43.54 29.59 68.60 2.03 45.57 16 4 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.27 -14.35 9.58 84.03 0.81 -13.55 16 8 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 9 N -0.60 -30.15 2.99 -698.25 -2.09 -32.23 16 10 C 0.14 6.12 6.54 86.51 0.57 6.69 16 11 C -0.12 -4.50 5.67 30.82 0.17 -4.33 16 12 C 0.17 6.35 2.12 45.02 0.10 6.45 16 13 H 0.06 2.68 7.58 -2.39 -0.02 2.66 16 14 N -0.70 -22.57 4.91 -446.39 -2.19 -24.76 16 15 C 0.60 20.49 7.75 86.44 0.67 21.16 16 16 O -0.56 -22.32 15.11 -4.31 -0.07 -22.39 16 17 C -0.10 -2.99 7.12 23.85 0.17 -2.82 16 18 O -0.18 -4.11 10.43 -12.32 -0.13 -4.24 16 19 C 0.01 0.19 12.05 66.90 0.81 0.99 16 20 C -0.20 -3.65 5.92 -20.14 -0.12 -3.77 16 21 C -0.09 -2.29 5.94 -19.86 -0.12 -2.41 16 22 C -0.06 -1.40 5.40 29.98 0.16 -1.24 16 23 C -0.11 -1.82 5.86 30.75 0.18 -1.64 16 24 C -0.12 -1.44 5.86 30.75 0.18 -1.26 16 25 C -0.05 -0.50 6.30 30.01 0.19 -0.31 16 26 C 0.09 3.51 3.14 30.67 0.10 3.60 16 27 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 28 O -0.57 -19.91 13.16 -148.98 -1.96 -21.87 16 29 C 0.16 7.52 4.93 86.36 0.43 7.95 16 30 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 31 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 2.82 7.93 -2.39 -0.02 2.80 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 35 H 0.41 11.63 8.37 -92.70 -0.78 10.85 16 36 H 0.25 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.07 1.85 7.48 -2.39 -0.02 1.83 16 39 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 41 H 0.06 0.80 8.10 -2.39 -0.02 0.78 16 42 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.39 10.73 9.08 -74.06 -0.67 10.06 16 46 H 0.07 3.78 6.04 -2.39 -0.01 3.77 16 47 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 Total: -1.00 -70.95 376.17 0.09 -70.86 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -0.45 Total: 29.62 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 4.70 Total: 13.34 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -4.04 Total: -110.89 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -2.15 Total: -48.49 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -70.95 0.09 -70.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090763123.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.073 kcal (2) G-P(sol) polarization free energy of solvation -70.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.59 seconds