Wall clock time and date at job start Tue Mar 31 2020 21:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.30555 * 35.72592 * 10 9 7 12 12 C 1.54381 * 110.34480 * 273.54788 * 10 9 7 13 13 N 1.48145 * 104.61860 * 264.99812 * 12 10 9 14 14 C 1.34780 * 127.84267 * 140.39258 * 13 12 10 15 15 O 1.21279 * 120.00215 * 179.97438 * 14 13 12 16 16 C 1.50697 * 119.99662 * 359.97438 * 14 13 12 17 17 C 1.52996 * 109.47338 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47415 * 180.02562 * 17 16 14 19 19 C 1.53783 * 113.60860 * 272.49287 * 18 17 16 20 20 C 1.53780 * 87.07968 * 220.02042 * 19 18 17 21 21 C 1.53782 * 87.08289 * 25.43525 * 20 19 18 22 22 C 1.48151 * 104.32196 * 320.41263 * 13 12 10 23 23 C 1.54289 * 110.34021 * 158.00997 * 10 9 7 24 24 H 1.08993 * 110.34152 * 0.02562 * 23 10 9 25 25 C 1.53002 * 110.34066 * 237.74355 * 23 10 9 26 26 F 1.39902 * 109.47408 * 60.00029 * 25 23 10 27 27 F 1.39902 * 109.46990 * 180.02562 * 25 23 10 28 28 F 1.39903 * 109.47148 * 299.99699 * 25 23 10 29 29 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 31 31 H 1.09002 * 110.41311 * 23.78151 * 12 10 9 32 32 H 1.09001 * 110.41143 * 146.09703 * 12 10 9 33 33 H 1.09008 * 109.46974 * 299.99981 * 16 14 13 34 34 H 1.09008 * 109.47376 * 59.99539 * 16 14 13 35 35 H 1.09008 * 109.46960 * 299.99852 * 17 16 14 36 36 H 1.09001 * 109.47396 * 59.99032 * 17 16 14 37 37 H 1.08991 * 112.84998 * 43.79969 * 18 17 16 38 38 H 1.08999 * 113.62015 * 334.56548 * 19 18 17 39 39 H 1.09002 * 113.61088 * 105.47254 * 19 18 17 40 40 H 1.08998 * 113.61419 * 270.88388 * 20 19 18 41 41 H 1.09001 * 113.61696 * 139.98852 * 20 19 18 42 42 H 1.08996 * 113.61208 * 220.01972 * 21 20 19 43 43 H 1.08998 * 113.69218 * 89.12640 * 21 20 19 44 44 H 1.09002 * 110.40526 * 158.37047 * 22 13 12 45 45 H 1.08998 * 110.40459 * 280.68514 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9660 -3.5693 0.5974 12 6 2.4042 -4.0767 -1.4442 13 7 1.3099 -4.9940 -1.8391 14 6 0.6916 -5.0775 -3.0338 15 8 -0.1944 -5.8883 -3.2027 16 6 1.1011 -4.1633 -4.1596 17 6 0.2489 -4.4618 -5.3947 18 6 0.6651 -3.5340 -6.5379 19 6 -0.0738 -2.1854 -6.5367 20 6 -0.1468 -2.3133 -8.0675 21 6 -0.0490 -3.8348 -7.8663 22 6 1.0491 -5.7985 -0.6227 23 6 1.1647 -4.7919 0.5422 24 1 0.1807 -4.4057 0.8079 25 6 1.8228 -5.4544 1.7543 26 9 2.0110 -4.5019 2.7615 27 9 0.9987 -6.4800 2.2298 28 9 3.0607 -5.9876 1.3794 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.4245 -3.2055 -2.0989 32 1 3.3636 -4.5934 -1.4705 33 1 0.9525 -3.1264 -3.8580 34 1 2.1529 -4.3259 -4.3954 35 1 0.3971 -5.4987 -5.6964 36 1 -0.8027 -4.2990 -5.1585 37 1 1.7467 -3.4408 -6.6349 38 1 -1.0478 -2.2214 -6.0487 39 1 0.5403 -1.3513 -6.1971 40 1 0.7127 -1.8849 -8.5829 41 1 -1.0986 -1.9888 -8.4879 42 1 0.5853 -4.3323 -8.6000 43 1 -1.0154 -4.3232 -7.7417 44 1 0.0471 -6.2261 -0.6574 45 1 1.7948 -6.5870 -0.5214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099235036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:00 Heat of formation + Delta-G solvation = -164.964384 kcal Electronic energy + Delta-G solvation = -30157.391750 eV Core-core repulsion = 25567.353794 eV Total energy + Delta-G solvation = -4590.037956 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -49.99394 -47.50261 -47.41088 -39.99300 -38.91137 -37.64511 -34.40531 -32.87286 -31.96440 -30.53173 -27.50546 -27.06241 -25.65258 -25.06078 -24.08109 -22.58465 -21.73062 -20.50117 -19.52322 -19.15166 -18.43781 -18.12149 -17.77806 -17.04362 -16.79418 -15.79312 -15.55121 -15.50945 -14.88619 -14.57379 -14.36324 -14.24434 -14.20448 -13.96218 -13.87052 -13.66579 -13.59138 -13.54764 -13.36029 -12.94228 -12.81391 -12.47488 -12.30339 -11.97605 -11.87551 -11.64384 -11.50316 -11.24129 -11.12375 -10.96402 -10.83835 -10.71524 -10.59853 -10.26301 -10.12497 -10.09069 -9.66029 -9.35780 -9.24801 -8.60772 -7.28306 -6.27295 -3.31881 2.69838 2.83876 3.12584 3.43229 3.45884 3.63627 3.89137 3.98965 4.11736 4.49930 4.53795 4.58949 4.60402 4.74273 4.80797 4.81972 4.96980 5.12728 5.17495 5.22788 5.35196 5.38404 5.49872 5.50973 5.59881 5.65194 5.68581 5.72438 5.75030 5.80843 5.83884 5.88406 5.94981 6.02759 6.09857 6.15884 6.25140 6.29829 6.44454 6.50407 7.60904 7.68382 8.30330 8.56608 8.96653 9.84300 9.95974 11.19611 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008049 B = 0.004465 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3477.703092 B = 6270.143917 C = 9169.595464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.034 4.034 3 Si 1.079 2.921 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.344 4.344 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.184 3.816 11 H 0.077 0.923 12 C 0.073 3.927 13 N -0.615 5.615 14 C 0.539 3.461 15 O -0.552 6.552 16 C -0.134 4.134 17 C -0.091 4.091 18 C -0.111 4.111 19 C -0.139 4.139 20 C -0.144 4.144 21 C -0.137 4.137 22 C 0.116 3.884 23 C -0.166 4.166 24 H 0.125 0.875 25 C 0.464 3.536 26 F -0.173 7.173 27 F -0.187 7.187 28 F -0.183 7.183 29 H 0.256 0.744 30 H 0.370 0.630 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.102 -9.964 -7.911 13.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.233 4.233 3 Si 0.909 3.091 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.220 1.220 7 C -0.474 4.474 8 H 0.087 0.913 9 N -0.363 5.363 10 C 0.071 3.929 11 H 0.095 0.905 12 C -0.053 4.053 13 N -0.348 5.348 14 C 0.329 3.671 15 O -0.430 6.430 16 C -0.173 4.173 17 C -0.129 4.129 18 C -0.130 4.130 19 C -0.177 4.177 20 C -0.181 4.181 21 C -0.174 4.174 22 C -0.008 4.008 23 C -0.188 4.188 24 H 0.143 0.857 25 C 0.410 3.590 26 F -0.154 7.154 27 F -0.168 7.168 28 F -0.164 7.164 29 H 0.067 0.933 30 H 0.204 0.796 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.643 -8.688 -8.078 12.410 hybrid contribution 0.117 -1.756 0.439 1.814 sum 3.760 -10.444 -7.638 13.474 Atomic orbital electron populations 1.70904 1.06125 1.28578 1.52217 1.25802 0.96913 1.01063 0.99530 0.83267 0.74319 0.75521 0.76020 1.20962 1.22070 1.22037 1.19990 0.92132 0.85215 1.50077 0.91294 1.42427 1.04780 0.99999 1.89076 1.20971 0.93979 0.84851 0.93053 0.90517 1.23563 0.88633 0.93381 0.99709 1.48886 1.37523 1.37928 1.10496 1.20428 0.80807 0.83791 0.82047 1.90669 1.31261 1.38978 1.82104 1.21639 1.01635 1.00553 0.93521 1.21319 0.99802 0.99435 0.92337 1.22580 0.99694 0.95942 0.94747 1.23007 1.01091 0.97536 0.96023 1.22807 1.01781 0.96557 0.96967 1.22929 1.00900 0.96417 0.97161 1.22093 1.03348 0.92604 0.82714 1.23860 1.03525 0.99069 0.92321 0.85678 1.20271 0.76769 0.76666 0.85324 1.93237 1.95224 1.63896 1.63062 1.93173 1.72305 1.61363 1.89959 1.93155 1.44913 1.87094 1.91287 0.93290 0.79571 0.88575 0.91482 0.88168 0.89206 0.91423 0.91146 0.89292 0.89964 0.91299 0.90415 0.91706 0.91819 0.90138 0.88970 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.19 13.70 55.49 0.76 -26.43 16 2 C -0.03 -0.92 5.50 -17.43 -0.10 -1.02 16 3 Si 1.08 24.28 29.92 -169.99 -5.09 19.20 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.34 -8.71 9.97 -15.06 -0.15 -8.86 16 8 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 9 N -0.72 -16.03 5.13 -52.07 -0.27 -16.30 16 10 C 0.18 3.22 2.99 -66.53 -0.20 3.02 16 11 H 0.08 1.38 7.37 -51.93 -0.38 1.00 16 12 C 0.07 1.12 6.63 -2.41 -0.02 1.10 16 13 N -0.61 -9.48 3.32 -169.31 -0.56 -10.05 16 14 C 0.54 8.74 7.91 -10.99 -0.09 8.65 16 15 O -0.55 -10.43 16.25 5.56 0.09 -10.34 16 16 C -0.13 -1.78 4.67 -27.89 -0.13 -1.91 16 17 C -0.09 -1.13 4.34 -26.73 -0.12 -1.25 16 18 C -0.11 -1.18 3.65 -89.80 -0.33 -1.51 16 19 C -0.14 -1.55 7.63 -25.92 -0.20 -1.75 16 20 C -0.14 -1.37 8.08 -25.92 -0.21 -1.58 16 21 C -0.14 -1.31 7.64 -25.92 -0.20 -1.51 16 22 C 0.12 1.66 6.38 -2.41 -0.02 1.64 16 23 C -0.17 -2.52 2.84 -89.22 -0.25 -2.78 16 24 H 0.13 1.98 7.64 -51.93 -0.40 1.59 16 25 C 0.46 6.78 2.53 37.16 0.09 6.88 16 26 F -0.17 -2.88 16.93 2.25 0.04 -2.84 16 27 F -0.19 -2.62 17.17 2.25 0.04 -2.58 16 28 F -0.18 -2.56 16.05 2.25 0.04 -2.52 16 29 H 0.26 7.35 6.77 -40.82 -0.28 7.07 16 30 H 0.37 8.73 6.33 -40.82 -0.26 8.47 16 31 H 0.10 1.59 7.22 -51.93 -0.37 1.22 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 1.44 7.95 -51.92 -0.41 1.03 16 34 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 35 H 0.07 0.85 8.10 -51.92 -0.42 0.43 16 36 H 0.07 0.97 7.80 -51.93 -0.41 0.57 16 37 H 0.09 0.89 8.13 -51.93 -0.42 0.46 16 38 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 44 H 0.09 1.33 7.88 -51.93 -0.41 0.93 16 45 H 0.08 1.01 7.22 -51.93 -0.37 0.63 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -29.59 375.65 -7.90 -37.49 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.71 Total: 9.56 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.90 Total: -0.86 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.07 Total: -52.77 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 9 Polarization: -8.05 SS G_CDS: 0.11 Total: -7.94 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.09 Total: 19.20 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.59 -7.90 -37.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099235036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.478 kcal (2) G-P(sol) polarization free energy of solvation -29.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds