Wall clock time and date at job start Tue Mar 31 2020 21:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99846 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99598 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99591 * 3 2 1 7 7 C 1.38811 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99727 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.30555 * 35.72592 * 10 9 7 12 12 C 1.54381 * 110.34480 * 273.54788 * 10 9 7 13 13 N 1.48145 * 104.61860 * 264.99812 * 12 10 9 14 14 C 1.34780 * 127.84267 * 140.39258 * 13 12 10 15 15 O 1.21279 * 120.00215 * 179.97438 * 14 13 12 16 16 C 1.50697 * 119.99662 * 359.97438 * 14 13 12 17 17 C 1.52996 * 109.47338 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47415 * 180.02562 * 17 16 14 19 19 C 1.53783 * 113.60860 * 272.49287 * 18 17 16 20 20 C 1.53780 * 87.07968 * 220.02042 * 19 18 17 21 21 C 1.53782 * 87.08289 * 25.43525 * 20 19 18 22 22 C 1.48151 * 104.32196 * 320.41263 * 13 12 10 23 23 C 1.54289 * 110.34021 * 158.00997 * 10 9 7 24 24 H 1.08993 * 110.34152 * 0.02562 * 23 10 9 25 25 C 1.53002 * 110.34066 * 237.74355 * 23 10 9 26 26 F 1.39902 * 109.47408 * 60.00029 * 25 23 10 27 27 F 1.39902 * 109.46990 * 180.02562 * 25 23 10 28 28 F 1.39903 * 109.47148 * 299.99699 * 25 23 10 29 29 H 0.97001 * 119.99952 * 179.97438 * 1 2 3 30 30 H 0.96998 * 120.00177 * 0.02562 * 9 7 2 31 31 H 1.09002 * 110.41311 * 23.78151 * 12 10 9 32 32 H 1.09001 * 110.41143 * 146.09703 * 12 10 9 33 33 H 1.09008 * 109.46974 * 299.99981 * 16 14 13 34 34 H 1.09008 * 109.47376 * 59.99539 * 16 14 13 35 35 H 1.09008 * 109.46960 * 299.99852 * 17 16 14 36 36 H 1.09001 * 109.47396 * 59.99032 * 17 16 14 37 37 H 1.08991 * 112.84998 * 43.79969 * 18 17 16 38 38 H 1.08999 * 113.62015 * 334.56548 * 19 18 17 39 39 H 1.09002 * 113.61088 * 105.47254 * 19 18 17 40 40 H 1.08998 * 113.61419 * 270.88388 * 20 19 18 41 41 H 1.09001 * 113.61696 * 139.98852 * 20 19 18 42 42 H 1.08996 * 113.61208 * 220.01972 * 21 20 19 43 43 H 1.08998 * 113.69218 * 89.12640 * 21 20 19 44 44 H 1.09002 * 110.40526 * 158.37047 * 22 13 12 45 45 H 1.08998 * 110.40459 * 280.68514 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9660 -3.5693 0.5974 12 6 2.4042 -4.0767 -1.4442 13 7 1.3099 -4.9940 -1.8391 14 6 0.6916 -5.0775 -3.0338 15 8 -0.1944 -5.8883 -3.2027 16 6 1.1011 -4.1633 -4.1596 17 6 0.2489 -4.4618 -5.3947 18 6 0.6651 -3.5340 -6.5379 19 6 -0.0738 -2.1854 -6.5367 20 6 -0.1468 -2.3133 -8.0675 21 6 -0.0490 -3.8348 -7.8663 22 6 1.0491 -5.7985 -0.6227 23 6 1.1647 -4.7919 0.5422 24 1 0.1807 -4.4057 0.8079 25 6 1.8228 -5.4544 1.7543 26 9 2.0110 -4.5019 2.7615 27 9 0.9987 -6.4800 2.2298 28 9 3.0607 -5.9876 1.3794 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 2.4245 -3.2055 -2.0989 32 1 3.3636 -4.5934 -1.4705 33 1 0.9525 -3.1264 -3.8580 34 1 2.1529 -4.3259 -4.3954 35 1 0.3971 -5.4987 -5.6964 36 1 -0.8027 -4.2990 -5.1585 37 1 1.7467 -3.4408 -6.6349 38 1 -1.0478 -2.2214 -6.0487 39 1 0.5403 -1.3513 -6.1971 40 1 0.7127 -1.8849 -8.5829 41 1 -1.0986 -1.9888 -8.4879 42 1 0.5853 -4.3323 -8.6000 43 1 -1.0154 -4.3232 -7.7417 44 1 0.0471 -6.2261 -0.6574 45 1 1.7948 -6.5870 -0.5214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099235036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:59 Heat of formation + Delta-G solvation = -180.530486 kcal Electronic energy + Delta-G solvation = -30158.066747 eV Core-core repulsion = 25567.353794 eV Total energy + Delta-G solvation = -4590.712953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -51.20835 -48.67987 -48.66338 -41.26292 -39.84067 -38.97433 -36.16398 -34.05243 -33.34429 -32.11439 -29.01396 -28.15496 -26.51303 -26.17722 -25.82138 -23.97049 -22.77358 -21.84481 -20.55034 -20.25309 -19.75605 -19.48109 -19.16799 -18.55834 -18.06930 -17.02095 -16.85460 -16.55730 -16.16240 -15.89742 -15.65526 -15.57988 -15.44257 -15.31735 -15.16907 -15.06813 -14.86366 -14.79887 -14.58219 -14.16692 -13.80288 -13.54826 -13.31570 -13.30749 -13.04349 -12.90089 -12.80525 -12.70451 -12.52120 -12.29887 -12.25699 -11.94039 -11.88496 -11.43343 -11.29230 -11.23924 -11.05868 -10.99360 -10.82170 -9.97609 -9.15067 -8.36310 -5.34710 1.43547 1.58085 1.62803 1.70975 1.86452 1.90396 2.61586 2.72822 2.74896 2.89230 3.37118 3.40123 3.58819 3.64312 3.69459 3.70349 3.75974 3.89424 3.93219 3.99533 4.12653 4.18878 4.32389 4.38002 4.43935 4.58610 4.63413 4.65469 4.71892 4.83238 4.84870 4.88797 4.91520 5.02172 5.08969 5.11374 5.18577 5.27790 5.42855 5.62409 5.66054 6.40848 6.49278 7.02359 7.02420 7.91503 8.03430 9.14092 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008049 B = 0.004465 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3477.703092 B = 6270.143917 C = 9169.595464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.095 4.095 3 Si 1.121 2.879 4 H -0.300 1.300 5 H -0.273 1.273 6 H -0.279 1.279 7 C -0.328 4.328 8 H 0.077 0.923 9 N -0.733 5.733 10 C 0.178 3.822 11 H 0.078 0.922 12 C 0.084 3.916 13 N -0.616 5.616 14 C 0.533 3.467 15 O -0.583 6.583 16 C -0.127 4.127 17 C -0.085 4.085 18 C -0.108 4.108 19 C -0.150 4.150 20 C -0.137 4.137 21 C -0.133 4.133 22 C 0.118 3.882 23 C -0.158 4.158 24 H 0.115 0.885 25 C 0.473 3.527 26 F -0.185 7.185 27 F -0.180 7.180 28 F -0.174 7.174 29 H 0.243 0.757 30 H 0.360 0.640 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.278 -10.805 -8.859 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.287 4.287 3 Si 0.947 3.053 4 H -0.227 1.227 5 H -0.199 1.199 6 H -0.206 1.206 7 C -0.459 4.459 8 H 0.095 0.905 9 N -0.375 5.375 10 C 0.067 3.933 11 H 0.096 0.904 12 C -0.041 4.041 13 N -0.349 5.349 14 C 0.324 3.676 15 O -0.463 6.463 16 C -0.166 4.166 17 C -0.123 4.123 18 C -0.126 4.126 19 C -0.187 4.187 20 C -0.174 4.174 21 C -0.170 4.170 22 C -0.005 4.005 23 C -0.179 4.179 24 H 0.133 0.867 25 C 0.418 3.582 26 F -0.167 7.167 27 F -0.162 7.162 28 F -0.156 7.156 29 H 0.054 0.946 30 H 0.192 0.808 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.121 0.879 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.875 -9.582 -9.021 14.412 hybrid contribution -0.537 -1.599 0.793 1.864 sum 5.338 -11.181 -8.227 14.873 Atomic orbital electron populations 1.71011 1.07415 1.27883 1.55854 1.27011 0.96890 1.04450 1.00327 0.82706 0.73439 0.71891 0.77291 1.22696 1.19873 1.20564 1.20315 0.92591 0.86147 1.46833 0.90477 1.42556 1.04441 1.01034 1.89442 1.21165 0.93846 0.83686 0.94595 0.90403 1.23402 0.89845 0.93492 0.97378 1.48950 1.37422 1.37852 1.10654 1.20940 0.80249 0.83684 0.82712 1.90653 1.32535 1.40448 1.82707 1.21651 1.03261 0.98941 0.92775 1.21250 0.98422 0.99888 0.92695 1.22598 1.00473 0.94968 0.94551 1.23036 1.00382 0.97756 0.97541 1.22805 1.02573 0.96544 0.95511 1.22912 1.00828 0.96582 0.96708 1.22182 1.04066 0.92564 0.81712 1.23696 1.02609 0.98603 0.93023 0.86696 1.20043 0.76980 0.76521 0.84620 1.93218 1.95312 1.64555 1.63603 1.93189 1.72199 1.60957 1.89840 1.93173 1.44364 1.86897 1.91145 0.94632 0.80767 0.89635 0.88091 0.89384 0.86598 0.91437 0.93308 0.87902 0.91447 0.91957 0.89166 0.91329 0.90291 0.90582 0.89250 0.88049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.05 13.70 21.65 0.30 -57.75 16 2 C -0.09 -5.11 5.50 84.86 0.47 -4.65 16 3 Si 1.12 48.72 29.92 68.60 2.05 50.77 16 4 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.33 -16.43 9.97 84.03 0.84 -15.59 16 8 H 0.08 3.68 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -32.56 5.13 -318.66 -1.64 -34.20 16 10 C 0.18 5.97 2.99 45.90 0.14 6.10 16 11 H 0.08 2.64 7.37 -2.39 -0.02 2.62 16 12 C 0.08 2.39 6.63 86.53 0.57 2.96 16 13 N -0.62 -18.07 3.32 -807.96 -2.68 -20.75 16 14 C 0.53 16.85 7.91 87.66 0.69 17.54 16 15 O -0.58 -21.93 16.25 -3.03 -0.05 -21.98 16 16 C -0.13 -3.26 4.67 29.85 0.14 -3.12 16 17 C -0.08 -2.06 4.34 30.59 0.13 -1.93 16 18 C -0.11 -2.15 3.65 -10.27 -0.04 -2.18 16 19 C -0.15 -3.28 7.63 31.12 0.24 -3.04 16 20 C -0.14 -2.40 8.08 31.12 0.25 -2.15 16 21 C -0.13 -2.33 7.64 31.12 0.24 -2.09 16 22 C 0.12 3.17 6.38 86.53 0.55 3.72 16 23 C -0.16 -4.61 2.84 -9.89 -0.03 -4.64 16 24 H 0.11 3.65 7.64 -2.39 -0.02 3.63 16 25 C 0.47 13.00 2.53 71.98 0.18 13.19 16 26 F -0.19 -5.97 16.93 44.97 0.76 -5.21 16 27 F -0.18 -4.75 17.17 44.97 0.77 -3.98 16 28 F -0.17 -4.40 16.05 44.97 0.72 -3.67 16 29 H 0.24 14.51 6.77 -92.71 -0.63 13.88 16 30 H 0.36 17.39 6.33 -92.71 -0.59 16.81 16 31 H 0.09 2.67 7.22 -2.39 -0.02 2.66 16 32 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 33 H 0.09 2.52 7.95 -2.38 -0.02 2.50 16 34 H 0.12 2.35 8.14 -2.38 -0.02 2.33 16 35 H 0.07 1.64 8.10 -2.38 -0.02 1.62 16 36 H 0.05 1.38 7.80 -2.39 -0.02 1.37 16 37 H 0.10 1.80 8.13 -2.39 -0.02 1.78 16 38 H 0.07 1.65 7.90 -2.39 -0.02 1.63 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.40 8.10 -2.39 -0.02 1.38 16 44 H 0.09 2.50 7.88 -2.39 -0.02 2.48 16 45 H 0.10 2.30 7.22 -2.39 -0.02 2.28 16 Total: -1.00 -63.74 375.65 5.18 -58.56 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: 0.56 Total: 34.07 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 4.38 Total: 4.13 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -4.02 Total: -112.70 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.98 kcal Atomic # 9 Polarization: -15.11 SS G_CDS: 2.26 Total: -12.86 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.05 Total: 50.77 kcal Total: -63.74 5.18 -58.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099235036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.966 kcal (2) G-P(sol) polarization free energy of solvation -63.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds