Wall clock time and date at job start Tue Mar 31 2020 22:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99956 * 2 1 4 4 H 1.48503 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46988 * 300.00259 * 3 2 1 6 6 H 1.48495 * 109.47272 * 60.00084 * 3 2 1 7 7 C 1.38812 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00001 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00262 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00554 * 180.02562 * 9 7 2 11 11 C 1.53774 * 113.61611 * 155.00005 * 10 9 7 12 12 C 1.53782 * 87.08180 * 89.11486 * 11 10 9 13 13 C 1.53004 * 113.61243 * 139.98032 * 12 11 10 14 14 N 1.46495 * 109.46989 * 174.99976 * 13 12 11 15 15 C 1.34782 * 120.00386 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99312 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00287 * 179.97438 * 15 14 13 18 18 C 1.52997 * 110.02049 * 300.70383 * 17 15 14 19 19 F 1.39905 * 109.47157 * 59.29692 * 18 17 15 20 20 F 1.39900 * 109.47010 * 299.30083 * 18 17 15 21 21 F 1.39897 * 109.47422 * 179.29775 * 18 17 15 22 22 C 1.54266 * 110.03097 * 62.09616 * 17 15 14 23 23 C 1.54966 * 104.16247 * 95.75024 * 22 17 15 24 24 C 1.54893 * 102.77317 * 37.88972 * 23 22 17 25 25 C 1.53877 * 110.03076 * 179.30866 * 17 15 14 26 26 C 1.53781 * 87.08026 * 25.43395 * 12 11 10 27 27 H 0.97000 * 120.00194 * 359.97438 * 1 2 3 28 28 H 0.97007 * 119.99278 * 359.97438 * 9 7 2 29 29 H 1.09005 * 112.84729 * 23.79932 * 10 9 7 30 30 H 1.08999 * 113.61854 * 334.56127 * 11 10 9 31 31 H 1.09003 * 113.61159 * 203.65987 * 11 10 9 32 32 H 1.08993 * 113.61478 * 270.79722 * 12 11 10 33 33 H 1.08997 * 109.47159 * 54.99841 * 13 12 11 34 34 H 1.08996 * 109.47150 * 294.99762 * 13 12 11 35 35 H 0.97000 * 120.00429 * 359.97438 * 14 13 12 36 36 H 1.09003 * 110.48923 * 214.39805 * 22 17 15 37 37 H 1.09000 * 110.48702 * 337.04345 * 22 17 15 38 38 H 1.09000 * 110.72119 * 279.57725 * 23 22 17 39 39 H 1.08997 * 110.76317 * 156.22168 * 23 22 17 40 40 H 1.09002 * 110.48236 * 203.40453 * 24 23 22 41 41 H 1.08994 * 110.48670 * 80.76108 * 24 23 22 42 42 H 1.08995 * 110.03307 * 359.95456 * 25 17 15 43 43 H 1.09006 * 110.02681 * 121.33637 * 25 17 15 44 44 H 1.08999 * 113.61370 * 89.11714 * 26 12 11 45 45 H 1.09003 * 113.60996 * 220.02160 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.2601 -4.8288 0.5949 12 6 0.7204 -5.0790 -0.8232 13 6 0.6195 -6.5616 -1.1877 14 7 -0.0124 -6.6993 -2.5022 15 6 -0.2063 -7.9234 -3.0319 16 8 0.1420 -8.9110 -2.4200 17 6 -0.8568 -8.0651 -4.3838 18 6 -2.2541 -7.4424 -4.3605 19 9 -2.1557 -6.0884 -4.0224 20 9 -3.0435 -8.1033 -3.4133 21 9 -2.8409 -7.5659 -5.6245 22 6 0.0091 -7.3802 -5.4612 23 6 0.8602 -8.5323 -6.0525 24 6 -0.1356 -9.7186 -6.0718 25 6 -0.9485 -9.5514 -4.7714 26 6 1.9990 -4.4022 -1.3444 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3880 0.0002 29 1 3.0656 -3.5639 0.4048 30 1 0.4938 -4.5190 1.3055 31 1 1.8870 -5.6367 0.9723 32 1 -0.1911 -4.5251 -1.0475 33 1 0.0191 -7.0796 -0.4399 34 1 1.6182 -6.9972 -1.2173 35 1 -0.2913 -5.9095 -2.9914 36 1 -0.6212 -6.9371 -6.2324 37 1 0.6509 -6.6233 -5.0104 38 1 1.7113 -8.7529 -5.4083 39 1 1.1912 -8.2894 -7.0622 40 1 0.4012 -10.6673 -6.0668 41 1 -0.7894 -9.6537 -6.9414 42 1 -0.5217 -10.1701 -3.9821 43 1 -1.9886 -9.8292 -4.9421 44 1 2.8278 -5.0934 -1.4971 45 1 1.8291 -3.7479 -2.1995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101073540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:10 Heat of formation + Delta-G solvation = -171.222372 kcal Electronic energy + Delta-G solvation = -30214.470512 eV Core-core repulsion = 25624.161190 eV Total energy + Delta-G solvation = -4590.309323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 14.80 seconds Orbital eigenvalues (eV) -50.49155 -47.96781 -47.91331 -40.66039 -38.79666 -37.47884 -34.87353 -33.27815 -31.26361 -30.12034 -29.28138 -27.34963 -25.15298 -25.10076 -23.84811 -22.65011 -21.69447 -21.20076 -20.23940 -19.03496 -18.55780 -18.46294 -18.10845 -17.33875 -16.75104 -16.30721 -15.51101 -15.32687 -14.88676 -14.85274 -14.72087 -14.58426 -14.33548 -14.21729 -14.09698 -14.03956 -13.86286 -13.71996 -13.38869 -13.27459 -12.93579 -12.34672 -12.23513 -11.96763 -11.80158 -11.64592 -11.59520 -11.47698 -11.41784 -11.07654 -10.99281 -10.88058 -10.53199 -10.29124 -10.14837 -9.88557 -9.72367 -9.53359 -9.15188 -8.91871 -7.02885 -5.83096 -3.12422 1.92133 2.57300 2.75967 3.35722 3.39800 3.45739 3.47402 3.47934 3.71356 4.11083 4.16746 4.39254 4.53447 4.66313 4.79919 4.88161 4.98504 5.00191 5.01638 5.18009 5.19256 5.32235 5.42492 5.47017 5.55857 5.56652 5.64527 5.65937 5.69678 5.80327 5.89567 5.93693 6.05061 6.16379 6.26305 6.33612 6.54325 6.70420 6.84968 7.00486 7.25949 7.67093 7.89314 8.35867 9.46671 10.03997 10.38035 11.39301 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.002701 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.981581 B =10362.782220 C =10749.897417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.706 5.706 10 C 0.168 3.832 11 C -0.147 4.147 12 C -0.121 4.121 13 C 0.130 3.870 14 N -0.715 5.715 15 C 0.525 3.475 16 O -0.520 6.520 17 C -0.133 4.133 18 C 0.464 3.536 19 F -0.175 7.175 20 F -0.175 7.175 21 F -0.173 7.173 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.113 4.113 26 C -0.169 4.169 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.406 0.594 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 -20.238 -12.770 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.345 5.345 10 C 0.056 3.944 11 C -0.187 4.187 12 C -0.140 4.140 13 C 0.007 3.993 14 N -0.367 5.367 15 C 0.308 3.692 16 O -0.396 6.396 17 C -0.137 4.137 18 C 0.410 3.590 19 F -0.156 7.156 20 F -0.156 7.156 21 F -0.154 7.154 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.158 4.158 25 C -0.151 4.151 26 C -0.210 4.210 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.243 0.757 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.125 0.875 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.705 -20.731 -12.275 24.153 hybrid contribution -0.492 1.504 -0.263 1.604 sum -2.197 -19.228 -12.538 23.059 Atomic orbital electron populations 1.69670 1.05138 1.25706 1.57442 1.24770 0.95541 0.97809 1.02750 0.86103 0.78813 0.83974 0.77208 1.20483 1.21833 1.21818 1.19329 0.91139 0.83941 1.42951 0.90935 1.42188 1.05710 0.99449 1.87107 1.21043 0.95121 0.85592 0.92690 1.23449 1.00510 0.99730 0.95014 1.22734 0.99744 0.92707 0.98805 1.21583 0.97656 0.97463 0.82576 1.46215 1.61244 1.07865 1.21409 1.19570 0.79864 0.84066 0.85712 1.90691 1.50770 1.37297 1.60852 1.22887 0.91251 1.01307 0.98295 1.20152 0.88312 0.76606 0.73954 1.93180 1.96151 1.34108 1.92168 1.93228 1.76817 1.80539 1.65028 1.93187 1.85913 1.95680 1.40662 1.22583 0.98088 0.98744 0.95959 1.22500 0.97906 0.93766 1.01573 1.22363 0.97576 0.99083 0.96787 1.22278 1.02311 0.90533 0.99976 1.23902 0.95536 0.99653 1.01884 0.93461 0.78094 0.91911 0.91247 0.90411 0.88778 0.91477 0.91159 0.75696 0.89120 0.89391 0.90660 0.90201 0.90520 0.90933 0.87504 0.90408 0.91363 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.71 -17.16 5.31 -52.64 -0.28 -17.44 16 10 C 0.17 3.20 4.56 -67.12 -0.31 2.89 16 11 C -0.15 -2.30 7.39 -25.92 -0.19 -2.49 16 12 C -0.12 -1.77 3.63 -89.80 -0.33 -2.10 16 13 C 0.13 1.69 5.51 -4.04 -0.02 1.67 16 14 N -0.72 -8.75 4.94 -60.30 -0.30 -9.05 16 15 C 0.52 6.57 6.20 -10.99 -0.07 6.50 16 16 O -0.52 -7.90 15.21 5.55 0.08 -7.81 16 17 C -0.13 -1.32 0.37 -154.54 -0.06 -1.38 16 18 C 0.46 5.01 2.03 37.16 0.08 5.08 16 19 F -0.17 -2.01 14.87 2.25 0.03 -1.98 16 20 F -0.17 -2.13 16.67 2.25 0.04 -2.09 16 21 F -0.17 -1.74 16.07 2.25 0.04 -1.70 16 22 C -0.12 -0.93 5.61 -25.03 -0.14 -1.07 16 23 C -0.12 -0.83 6.91 -24.69 -0.17 -1.00 16 24 C -0.12 -0.81 6.83 -25.07 -0.17 -0.98 16 25 C -0.11 -1.00 5.69 -25.61 -0.15 -1.15 16 26 C -0.17 -2.71 7.43 -25.92 -0.19 -2.90 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.39 9.93 7.90 -40.82 -0.32 9.61 16 29 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 32 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.91 7.84 -51.93 -0.41 0.50 16 35 H 0.41 4.69 6.45 -40.82 -0.26 4.43 16 36 H 0.09 0.65 7.27 -51.93 -0.38 0.27 16 37 H 0.09 0.72 7.45 -51.93 -0.39 0.33 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.11 1.11 6.39 -51.93 -0.33 0.78 16 43 H 0.08 0.64 7.32 -51.93 -0.38 0.26 16 44 H 0.07 0.97 7.90 -51.93 -0.41 0.56 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -30.47 370.63 -7.71 -38.18 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -6.65 Total: 10.35 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.96 Total: -4.12 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.15 Total: -53.40 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: 0.08 Total: -7.81 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.11 Total: -5.77 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.47 -7.71 -38.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101073540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.040 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.80 seconds