Wall clock time and date at job start Tue Mar 31 2020 22:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99956 * 2 1 4 4 H 1.48503 * 109.46999 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46988 * 300.00259 * 3 2 1 6 6 H 1.48495 * 109.47272 * 60.00084 * 3 2 1 7 7 C 1.38812 * 120.00017 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00001 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00262 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00554 * 180.02562 * 9 7 2 11 11 C 1.53774 * 113.61611 * 155.00005 * 10 9 7 12 12 C 1.53782 * 87.08180 * 89.11486 * 11 10 9 13 13 C 1.53004 * 113.61243 * 139.98032 * 12 11 10 14 14 N 1.46495 * 109.46989 * 174.99976 * 13 12 11 15 15 C 1.34782 * 120.00386 * 179.97438 * 14 13 12 16 16 O 1.21285 * 119.99312 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00287 * 179.97438 * 15 14 13 18 18 C 1.52997 * 110.02049 * 300.70383 * 17 15 14 19 19 F 1.39905 * 109.47157 * 59.29692 * 18 17 15 20 20 F 1.39900 * 109.47010 * 299.30083 * 18 17 15 21 21 F 1.39897 * 109.47422 * 179.29775 * 18 17 15 22 22 C 1.54266 * 110.03097 * 62.09616 * 17 15 14 23 23 C 1.54966 * 104.16247 * 95.75024 * 22 17 15 24 24 C 1.54893 * 102.77317 * 37.88972 * 23 22 17 25 25 C 1.53877 * 110.03076 * 179.30866 * 17 15 14 26 26 C 1.53781 * 87.08026 * 25.43395 * 12 11 10 27 27 H 0.97000 * 120.00194 * 359.97438 * 1 2 3 28 28 H 0.97007 * 119.99278 * 359.97438 * 9 7 2 29 29 H 1.09005 * 112.84729 * 23.79932 * 10 9 7 30 30 H 1.08999 * 113.61854 * 334.56127 * 11 10 9 31 31 H 1.09003 * 113.61159 * 203.65987 * 11 10 9 32 32 H 1.08993 * 113.61478 * 270.79722 * 12 11 10 33 33 H 1.08997 * 109.47159 * 54.99841 * 13 12 11 34 34 H 1.08996 * 109.47150 * 294.99762 * 13 12 11 35 35 H 0.97000 * 120.00429 * 359.97438 * 14 13 12 36 36 H 1.09003 * 110.48923 * 214.39805 * 22 17 15 37 37 H 1.09000 * 110.48702 * 337.04345 * 22 17 15 38 38 H 1.09000 * 110.72119 * 279.57725 * 23 22 17 39 39 H 1.08997 * 110.76317 * 156.22168 * 23 22 17 40 40 H 1.09002 * 110.48236 * 203.40453 * 24 23 22 41 41 H 1.08994 * 110.48670 * 80.76108 * 24 23 22 42 42 H 1.08995 * 110.03307 * 359.95456 * 25 17 15 43 43 H 1.09006 * 110.02681 * 121.33637 * 25 17 15 44 44 H 1.08999 * 113.61370 * 89.11714 * 26 12 11 45 45 H 1.09003 * 113.60996 * 220.02160 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.2601 -4.8288 0.5949 12 6 0.7204 -5.0790 -0.8232 13 6 0.6195 -6.5616 -1.1877 14 7 -0.0124 -6.6993 -2.5022 15 6 -0.2063 -7.9234 -3.0319 16 8 0.1420 -8.9110 -2.4200 17 6 -0.8568 -8.0651 -4.3838 18 6 -2.2541 -7.4424 -4.3605 19 9 -2.1557 -6.0884 -4.0224 20 9 -3.0435 -8.1033 -3.4133 21 9 -2.8409 -7.5659 -5.6245 22 6 0.0091 -7.3802 -5.4612 23 6 0.8602 -8.5323 -6.0525 24 6 -0.1356 -9.7186 -6.0718 25 6 -0.9485 -9.5514 -4.7714 26 6 1.9990 -4.4022 -1.3444 27 1 -0.4850 0.8400 0.0004 28 1 0.3555 -2.3880 0.0002 29 1 3.0656 -3.5639 0.4048 30 1 0.4938 -4.5190 1.3055 31 1 1.8870 -5.6367 0.9723 32 1 -0.1911 -4.5251 -1.0475 33 1 0.0191 -7.0796 -0.4399 34 1 1.6182 -6.9972 -1.2173 35 1 -0.2913 -5.9095 -2.9914 36 1 -0.6212 -6.9371 -6.2324 37 1 0.6509 -6.6233 -5.0104 38 1 1.7113 -8.7529 -5.4083 39 1 1.1912 -8.2894 -7.0622 40 1 0.4012 -10.6673 -6.0668 41 1 -0.7894 -9.6537 -6.9414 42 1 -0.5217 -10.1701 -3.9821 43 1 -1.9886 -9.8292 -4.9421 44 1 2.8278 -5.0934 -1.4971 45 1 1.8291 -3.7479 -2.1995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101073540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:57 Heat of formation + Delta-G solvation = -189.088439 kcal Electronic energy + Delta-G solvation = -30215.245243 eV Core-core repulsion = 25624.161190 eV Total energy + Delta-G solvation = -4591.084053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 11.55 seconds Orbital eigenvalues (eV) -51.37042 -48.85579 -48.79571 -41.60202 -40.11572 -38.31417 -36.14078 -35.04796 -32.33699 -31.66451 -29.95809 -28.61021 -26.44139 -26.01086 -25.67777 -23.76674 -22.83820 -21.83879 -21.15774 -20.07900 -19.63292 -19.41034 -19.32860 -19.03128 -17.62850 -17.32790 -16.72205 -16.40413 -16.24219 -15.85781 -15.68739 -15.57899 -15.56535 -15.27937 -15.19693 -14.99489 -14.86974 -14.73756 -14.62139 -14.44670 -14.13876 -13.77059 -13.29930 -13.00018 -12.95243 -12.89664 -12.67999 -12.51016 -12.28803 -12.16717 -12.13413 -12.07720 -12.05400 -11.67614 -11.49866 -11.47280 -11.12498 -10.93305 -10.79114 -10.21727 -9.00135 -7.95398 -5.23814 0.99737 1.48259 1.48455 1.58634 1.67319 1.81848 2.53305 2.55768 2.66437 2.86095 3.37154 3.38541 3.39228 3.53624 3.71187 3.76175 3.87872 4.08401 4.13082 4.17720 4.26833 4.31377 4.36539 4.38560 4.62655 4.68734 4.71304 4.72665 4.90293 4.92707 4.97617 4.98220 5.08552 5.12113 5.16033 5.19585 5.33931 5.38741 5.44087 5.53243 5.65897 6.26056 6.28323 6.90132 7.33191 8.10525 8.32242 9.28093 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.002701 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.981581 B =10362.782220 C =10749.897417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.295 1.295 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.721 5.721 10 C 0.144 3.856 11 C -0.134 4.134 12 C -0.106 4.106 13 C 0.138 3.862 14 N -0.714 5.714 15 C 0.524 3.476 16 O -0.548 6.548 17 C -0.128 4.128 18 C 0.463 3.537 19 F -0.181 7.181 20 F -0.185 7.185 21 F -0.167 7.167 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.115 4.115 26 C -0.152 4.152 27 H 0.250 0.750 28 H 0.373 0.627 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.410 0.590 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.861 -21.383 -14.000 25.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.372 4.372 8 H 0.096 0.904 9 N -0.359 5.359 10 C 0.034 3.966 11 C -0.173 4.173 12 C -0.125 4.125 13 C 0.015 3.985 14 N -0.366 5.366 15 C 0.309 3.691 16 O -0.426 6.426 17 C -0.133 4.133 18 C 0.408 3.592 19 F -0.162 7.162 20 F -0.167 7.167 21 F -0.148 7.148 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.153 4.153 25 C -0.152 4.152 26 C -0.192 4.192 27 H 0.059 0.941 28 H 0.205 0.795 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.247 0.753 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.480 -21.914 -13.516 25.751 hybrid contribution -0.844 1.780 0.142 1.975 sum -1.323 -20.134 -13.374 24.207 Atomic orbital electron populations 1.69820 1.06605 1.25970 1.59627 1.25553 0.96363 1.01075 1.03829 0.85090 0.78332 0.79900 0.76549 1.18920 1.22144 1.22242 1.19709 0.91546 0.85128 1.40809 0.90437 1.42337 1.05330 1.00661 1.87593 1.21389 0.95114 0.84838 0.95299 1.23355 0.99958 0.98802 0.95171 1.22510 0.98418 0.93615 0.97961 1.21431 0.98224 0.95823 0.82991 1.46209 1.61047 1.08163 1.21179 1.19936 0.79356 0.83483 0.86361 1.90679 1.52044 1.38070 1.61819 1.22922 0.90667 1.02342 0.97335 1.20296 0.88636 0.76298 0.73921 1.93169 1.96179 1.34602 1.92252 1.93207 1.77208 1.80723 1.65535 1.93197 1.85857 1.95624 1.40107 1.22679 0.98088 0.99084 0.95575 1.22518 0.97385 0.93200 1.02370 1.22382 0.97477 0.99505 0.95928 1.22313 1.02925 0.89346 1.00661 1.23719 0.97116 0.99234 0.99141 0.94067 0.79452 0.91985 0.92528 0.87306 0.90529 0.91597 0.90263 0.75287 0.87937 0.89585 0.91519 0.88237 0.89600 0.89530 0.89143 0.89988 0.88568 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.75 13.06 21.65 0.28 -58.47 16 2 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 7 C -0.24 -13.08 9.97 84.03 0.84 -12.24 16 8 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 9 N -0.72 -35.39 5.31 -320.46 -1.70 -37.09 16 10 C 0.14 5.34 4.56 45.52 0.21 5.55 16 11 C -0.13 -3.98 7.39 31.12 0.23 -3.75 16 12 C -0.11 -2.99 3.63 -10.27 -0.04 -3.03 16 13 C 0.14 3.37 5.51 86.38 0.48 3.84 16 14 N -0.71 -16.73 4.94 -463.06 -2.29 -19.01 16 15 C 0.52 12.64 6.20 87.65 0.54 13.18 16 16 O -0.55 -16.24 15.21 -3.05 -0.05 -16.29 16 17 C -0.13 -2.39 0.37 -52.21 -0.02 -2.41 16 18 C 0.46 9.54 2.03 71.98 0.15 9.69 16 19 F -0.18 -4.04 14.87 44.97 0.67 -3.37 16 20 F -0.19 -4.43 16.67 44.97 0.75 -3.68 16 21 F -0.17 -3.10 16.07 44.97 0.72 -2.37 16 22 C -0.12 -1.65 5.61 31.70 0.18 -1.47 16 23 C -0.12 -1.34 6.91 31.91 0.22 -1.12 16 24 C -0.12 -1.28 6.83 31.67 0.22 -1.07 16 25 C -0.11 -1.89 5.69 31.32 0.18 -1.71 16 26 C -0.15 -4.64 7.43 31.12 0.23 -4.41 16 27 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.37 19.77 7.90 -92.70 -0.73 19.04 16 29 H 0.06 2.30 8.10 -2.38 -0.02 2.28 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.11 2.60 8.10 -2.39 -0.02 2.58 16 32 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.84 7.84 -2.39 -0.02 1.82 16 35 H 0.41 9.13 6.45 -92.71 -0.60 8.53 16 36 H 0.10 1.23 7.27 -2.39 -0.02 1.21 16 37 H 0.09 1.26 7.45 -2.39 -0.02 1.24 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 1.82 6.39 -2.39 -0.02 1.81 16 43 H 0.08 1.25 7.32 -2.38 -0.02 1.24 16 44 H 0.10 2.44 7.90 -2.39 -0.02 2.42 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -65.78 370.63 3.99 -61.79 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: -0.30 Total: 33.68 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 3.88 Total: -2.79 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -3.71 Total: -114.57 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.05 Total: -16.29 kcal Atomic # 9 Polarization: -11.56 SS G_CDS: 2.14 Total: -9.42 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -65.78 3.99 -61.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101073540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.299 kcal (2) G-P(sol) polarization free energy of solvation -65.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.55 seconds