Wall clock time and date at job start Tue Mar 31 2020 17:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50701 * 120.00453 * 2 1 4 4 C 1.33117 * 119.99962 * 179.97438 * 2 1 3 5 5 F 1.35093 * 120.00436 * 180.02562 * 4 2 1 6 6 C 1.47300 * 119.99919 * 0.02562 * 4 2 1 7 7 O 1.21606 * 119.99764 * 359.97438 * 6 4 2 8 8 N 1.34770 * 120.00125 * 179.97438 * 6 4 2 9 9 C 1.46499 * 120.00118 * 179.97438 * 8 6 4 10 10 H 1.08998 * 110.52010 * 327.55341 * 9 8 6 11 11 C 1.54758 * 110.46614 * 205.00096 * 9 8 6 12 12 C 1.53382 * 101.45407 * 265.47595 * 11 9 8 13 13 C 1.52460 * 115.84968 * 106.84784 * 12 11 9 14 14 N 1.47251 * 87.72112 * 90.72047 * 13 12 11 15 15 C 1.36945 * 135.93939 * 206.20359 * 14 13 12 16 16 H 1.07999 * 120.00077 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99637 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00227 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99854 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47102 * 119.99824 * 19 17 15 22 22 H 1.48500 * 109.47389 * 240.00173 * 19 17 15 23 23 C 1.47258 * 88.11875 * 26.45240 * 14 13 12 24 24 N 1.46035 * 106.81869 * 335.20752 * 12 11 9 25 25 C 1.37271 * 142.31846 * 196.36281 * 24 12 11 26 26 C 1.34515 * 106.92951 * 179.86721 * 25 24 12 27 27 N 1.33980 * 108.04790 * 0.04156 * 26 25 24 28 28 C 1.30848 * 109.35432 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47810 * 240.00202 * 1 2 3 30 30 H 1.09000 * 109.46929 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47119 * 119.99934 * 1 2 3 32 32 H 1.09002 * 109.47069 * 269.99942 * 3 2 1 33 33 H 1.09003 * 109.46672 * 29.99543 * 3 2 1 34 34 H 1.08999 * 109.47252 * 149.99475 * 3 2 1 35 35 H 0.97006 * 120.00182 * 359.97438 * 8 6 4 36 36 H 1.08996 * 111.03104 * 147.43394 * 11 9 8 37 37 H 1.08999 * 111.02917 * 23.51646 * 11 9 8 38 38 H 1.09003 * 113.50985 * 336.00129 * 13 12 11 39 39 H 1.09002 * 113.51100 * 205.43007 * 13 12 11 40 40 H 0.97005 * 120.00046 * 179.97438 * 18 17 15 41 41 H 1.09003 * 113.50829 * 88.25823 * 23 14 13 42 42 H 1.08994 * 113.51633 * 218.82600 * 23 14 13 43 43 H 1.08002 * 126.53627 * 359.84659 * 25 24 12 44 44 H 1.08005 * 125.97877 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1726 -1.1528 0.0005 5 9 3.5235 -1.1529 0.0010 6 6 1.4360 -2.4285 0.0005 7 8 0.2200 -2.4284 0.0005 8 7 2.1098 -3.5956 0.0005 9 6 1.3773 -4.8643 0.0011 10 1 0.4404 -4.7644 0.5491 11 6 2.2450 -5.9899 0.6138 12 6 2.8756 -6.6058 -0.6414 13 6 4.3537 -6.3027 -0.8598 14 7 4.6568 -7.5251 -0.0969 15 6 5.7021 -7.9764 0.6641 16 1 6.5753 -7.3566 0.8040 17 6 5.6391 -9.2306 1.2556 18 7 4.5751 -9.9862 1.0847 19 14 7.0652 -9.8466 2.2930 20 1 8.1332 -8.8154 2.3284 21 1 6.5922 -10.1162 3.6746 22 1 7.6038 -11.0976 1.7012 23 6 3.3471 -8.0526 -0.5151 24 7 1.9781 -6.3088 -1.7544 25 6 1.6891 -6.6767 -3.0450 26 6 0.6616 -5.9090 -3.4504 27 7 0.3292 -5.0933 -2.4408 28 6 1.1141 -5.3251 -1.4198 29 1 -0.3635 -0.5138 0.8899 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 2.4423 1.6197 -1.0277 33 1 1.6714 2.0647 0.5138 34 1 3.2129 1.1747 0.5139 35 1 3.0799 -3.5957 0.0001 36 1 1.6270 -6.7183 1.1387 37 1 3.0089 -5.5793 1.2740 38 1 4.6875 -5.3890 -0.3680 39 1 4.6586 -6.3557 -1.9050 40 1 4.5313 -10.8628 1.4977 41 1 3.3762 -8.5850 -1.4658 42 1 2.8337 -8.6120 0.2669 43 1 2.1912 -7.4373 -3.6245 44 1 0.1875 -5.9439 -4.4202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101623069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:49 Heat of formation + Delta-G solvation = 75.016073 kcal Electronic energy + Delta-G solvation = -29328.790983 eV Core-core repulsion = 25199.848547 eV Total energy + Delta-G solvation = -4128.942436 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.99355 -42.35598 -39.77554 -38.75978 -36.16355 -34.97794 -33.33837 -31.91703 -30.87571 -28.39999 -28.21604 -27.75172 -27.15835 -25.19817 -24.57834 -22.52221 -21.68338 -21.30025 -19.91281 -19.29720 -18.74821 -18.09667 -17.13627 -16.62874 -16.17192 -15.81343 -15.66406 -15.03864 -14.80978 -14.71065 -14.34673 -14.18448 -14.05388 -13.79437 -13.66287 -13.32368 -13.20143 -12.93057 -12.87850 -12.61745 -12.50390 -12.47728 -12.20704 -11.94622 -11.86950 -11.33891 -11.23348 -11.09099 -10.91322 -10.56962 -10.25716 -9.84561 -9.78258 -9.59307 -9.41845 -9.09597 -8.99802 -8.94552 -8.11903 -7.22275 -6.02100 -3.37776 0.97375 2.22328 2.85498 2.97328 3.07082 3.26056 3.32353 3.34264 3.53100 4.07085 4.11744 4.25628 4.43174 4.52050 4.63250 4.73063 4.79186 4.98551 5.01464 5.20931 5.25178 5.36309 5.44343 5.51955 5.58096 5.62377 5.67525 5.75053 5.79300 5.84588 5.97129 6.00109 6.02470 6.07028 6.18035 6.30213 6.34196 6.70132 6.73977 6.84806 7.14235 7.18632 7.32352 7.44213 7.69263 7.99301 8.44277 8.76885 9.43812 10.27832 11.15136 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.003485 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.819249 B = 8031.541983 C = 9465.061391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.072 4.072 3 C -0.125 4.125 4 C -0.025 4.025 5 F -0.138 7.138 6 C 0.551 3.449 7 O -0.506 6.506 8 N -0.709 5.709 9 C 0.228 3.772 10 H 0.119 0.881 11 C -0.092 4.092 12 C 0.091 3.909 13 C 0.123 3.877 14 N -0.596 5.596 15 C -0.226 4.226 16 H 0.087 0.913 17 C -0.001 4.001 18 N -0.916 5.916 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.289 1.289 23 C 0.164 3.836 24 N -0.446 5.446 25 C -0.022 4.022 26 C -0.037 4.037 27 N -0.469 5.469 28 C 0.163 3.837 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.406 0.594 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.051 0.949 39 H 0.040 0.960 40 H 0.257 0.743 41 H 0.033 0.967 42 H 0.086 0.914 43 H 0.168 0.832 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.956 16.427 -2.413 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.075 4.075 3 C -0.182 4.182 4 C -0.048 4.048 5 F -0.117 7.117 6 C 0.338 3.662 7 O -0.383 6.383 8 N -0.361 5.361 9 C 0.121 3.879 10 H 0.137 0.863 11 C -0.130 4.130 12 C 0.006 3.994 13 C -0.005 4.005 14 N -0.322 5.322 15 C -0.353 4.353 16 H 0.105 0.895 17 C -0.199 4.199 18 N -0.562 5.562 19 Si 0.747 3.253 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.215 1.215 23 C 0.038 3.962 24 N -0.128 5.128 25 C -0.156 4.156 26 C -0.186 4.186 27 N -0.187 5.187 28 C -0.101 4.101 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.242 0.758 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.104 0.896 43 H 0.185 0.815 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.012 16.559 -2.186 18.115 hybrid contribution 2.329 -1.303 -0.003 2.668 sum -4.684 15.256 -2.188 16.108 Atomic orbital electron populations 1.20943 0.88699 1.01793 1.04860 1.22743 0.98144 0.93584 0.93064 1.20936 1.00301 0.93636 1.03291 1.19389 0.77147 0.94386 1.13838 1.91464 1.28612 1.97093 1.94524 1.18189 0.87530 0.83356 0.77154 1.90855 1.12177 1.86547 1.48697 1.45877 1.10632 1.04765 1.74818 1.19856 0.97168 0.82892 0.87979 0.86313 1.22490 0.99368 0.95878 0.95310 1.23399 0.89403 1.03018 0.83577 1.22580 0.88814 0.92765 0.96326 1.45403 1.17770 1.14502 1.54493 1.18960 0.94650 0.99788 1.21896 0.89494 1.24842 0.98137 0.96371 1.00503 1.69807 1.28035 1.11067 1.47287 0.85972 0.81024 0.78643 0.79642 1.20236 1.21383 1.21535 1.22255 0.86181 0.88870 0.98914 1.46459 1.26657 1.28929 1.10762 1.22397 1.02793 1.05412 0.85028 1.22233 0.99182 0.97858 0.99301 1.69796 1.25184 1.24907 0.98863 1.24455 0.93255 0.94338 0.98047 0.89484 0.92213 0.89345 0.89984 0.90423 0.90772 0.75769 0.87462 0.87053 0.93077 0.94211 0.93267 0.94901 0.89626 0.81455 0.81265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 8.33 36.00 0.30 -0.75 16 2 C -0.07 -0.74 6.12 -101.13 -0.62 -1.36 16 3 C -0.13 -0.93 9.78 36.01 0.35 -0.58 16 4 C -0.03 -0.31 7.37 -37.68 -0.28 -0.59 16 5 F -0.14 -1.69 15.81 2.25 0.04 -1.65 16 6 C 0.55 7.76 7.74 -12.58 -0.10 7.67 16 7 O -0.51 -8.08 12.73 5.27 0.07 -8.01 16 8 N -0.71 -9.69 5.09 -54.68 -0.28 -9.96 16 9 C 0.23 3.37 3.29 -67.68 -0.22 3.15 16 10 H 0.12 1.74 7.56 -51.93 -0.39 1.35 16 11 C -0.09 -1.38 6.13 -25.61 -0.16 -1.53 16 12 C 0.09 1.59 1.66 -133.41 -0.22 1.37 16 13 C 0.12 2.30 8.15 -7.91 -0.06 2.24 16 14 N -0.60 -13.79 3.76 -184.74 -0.69 -14.48 16 15 C -0.23 -5.81 10.74 -15.06 -0.16 -5.97 16 16 H 0.09 2.15 7.83 -52.49 -0.41 1.74 16 17 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 18 N -0.92 -25.27 11.51 55.49 0.64 -24.63 16 19 Si 0.92 20.72 29.55 -169.99 -5.02 15.69 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.16 3.55 6.95 -7.79 -0.05 3.49 16 24 N -0.45 -7.63 3.41 -100.95 -0.34 -7.98 16 25 C -0.02 -0.35 12.03 -16.43 -0.20 -0.55 16 26 C -0.04 -0.58 11.86 -17.93 -0.21 -0.80 16 27 N -0.47 -8.66 11.25 -10.48 -0.12 -8.77 16 28 C 0.16 2.83 8.23 -154.56 -1.27 1.55 16 29 H 0.09 0.93 7.22 -51.93 -0.38 0.56 16 30 H 0.06 0.43 7.94 -51.93 -0.41 0.02 16 31 H 0.09 1.02 7.22 -51.93 -0.38 0.65 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.44 8.05 -51.93 -0.42 0.02 16 34 H 0.07 0.56 7.55 -51.93 -0.39 0.17 16 35 H 0.41 5.14 8.18 -40.82 -0.33 4.80 16 36 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.11 1.60 7.87 -51.93 -0.41 1.19 16 38 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.09 2.03 7.14 -51.93 -0.37 1.66 16 43 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 44 H 0.17 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 369.94 15.07 5.57 5.57 Total: -1.00 -31.18 369.94 -9.12 -40.30 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.98 Total: 6.70 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -3.00 Total: 7.23 kcal Atomic # 7 Polarization: -65.04 SS G_CDS: -0.80 Total: -65.83 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.07 Total: -8.01 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.18 -9.12 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101623069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.315 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds