Wall clock time and date at job start Tue Mar 31 2020 17:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50701 * 120.00453 * 2 1 4 4 C 1.33117 * 119.99962 * 179.97438 * 2 1 3 5 5 F 1.35093 * 120.00436 * 180.02562 * 4 2 1 6 6 C 1.47300 * 119.99919 * 0.02562 * 4 2 1 7 7 O 1.21606 * 119.99764 * 359.97438 * 6 4 2 8 8 N 1.34770 * 120.00125 * 179.97438 * 6 4 2 9 9 C 1.46499 * 120.00118 * 179.97438 * 8 6 4 10 10 H 1.08998 * 110.52010 * 327.55341 * 9 8 6 11 11 C 1.54758 * 110.46614 * 205.00096 * 9 8 6 12 12 C 1.53382 * 101.45407 * 265.47595 * 11 9 8 13 13 C 1.52460 * 115.84968 * 106.84784 * 12 11 9 14 14 N 1.47251 * 87.72112 * 90.72047 * 13 12 11 15 15 C 1.36945 * 135.93939 * 206.20359 * 14 13 12 16 16 H 1.07999 * 120.00077 * 359.97438 * 15 14 13 17 17 C 1.38812 * 119.99637 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00227 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99854 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47102 * 119.99824 * 19 17 15 22 22 H 1.48500 * 109.47389 * 240.00173 * 19 17 15 23 23 C 1.47258 * 88.11875 * 26.45240 * 14 13 12 24 24 N 1.46035 * 106.81869 * 335.20752 * 12 11 9 25 25 C 1.37271 * 142.31846 * 196.36281 * 24 12 11 26 26 C 1.34515 * 106.92951 * 179.86721 * 25 24 12 27 27 N 1.33980 * 108.04790 * 0.04156 * 26 25 24 28 28 C 1.30848 * 109.35432 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47810 * 240.00202 * 1 2 3 30 30 H 1.09000 * 109.46929 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.47119 * 119.99934 * 1 2 3 32 32 H 1.09002 * 109.47069 * 269.99942 * 3 2 1 33 33 H 1.09003 * 109.46672 * 29.99543 * 3 2 1 34 34 H 1.08999 * 109.47252 * 149.99475 * 3 2 1 35 35 H 0.97006 * 120.00182 * 359.97438 * 8 6 4 36 36 H 1.08996 * 111.03104 * 147.43394 * 11 9 8 37 37 H 1.08999 * 111.02917 * 23.51646 * 11 9 8 38 38 H 1.09003 * 113.50985 * 336.00129 * 13 12 11 39 39 H 1.09002 * 113.51100 * 205.43007 * 13 12 11 40 40 H 0.97005 * 120.00046 * 179.97438 * 18 17 15 41 41 H 1.09003 * 113.50829 * 88.25823 * 23 14 13 42 42 H 1.08994 * 113.51633 * 218.82600 * 23 14 13 43 43 H 1.08002 * 126.53627 * 359.84659 * 25 24 12 44 44 H 1.08005 * 125.97877 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1726 -1.1528 0.0005 5 9 3.5235 -1.1529 0.0010 6 6 1.4360 -2.4285 0.0005 7 8 0.2200 -2.4284 0.0005 8 7 2.1098 -3.5956 0.0005 9 6 1.3773 -4.8643 0.0011 10 1 0.4404 -4.7644 0.5491 11 6 2.2450 -5.9899 0.6138 12 6 2.8756 -6.6058 -0.6414 13 6 4.3537 -6.3027 -0.8598 14 7 4.6568 -7.5251 -0.0969 15 6 5.7021 -7.9764 0.6641 16 1 6.5753 -7.3566 0.8040 17 6 5.6391 -9.2306 1.2556 18 7 4.5751 -9.9862 1.0847 19 14 7.0652 -9.8466 2.2930 20 1 8.1332 -8.8154 2.3284 21 1 6.5922 -10.1162 3.6746 22 1 7.6038 -11.0976 1.7012 23 6 3.3471 -8.0526 -0.5151 24 7 1.9781 -6.3088 -1.7544 25 6 1.6891 -6.6767 -3.0450 26 6 0.6616 -5.9090 -3.4504 27 7 0.3292 -5.0933 -2.4408 28 6 1.1141 -5.3251 -1.4198 29 1 -0.3635 -0.5138 0.8899 30 1 -0.3633 1.0277 -0.0005 31 1 -0.3633 -0.5138 -0.8900 32 1 2.4423 1.6197 -1.0277 33 1 1.6714 2.0647 0.5138 34 1 3.2129 1.1747 0.5139 35 1 3.0799 -3.5957 0.0001 36 1 1.6270 -6.7183 1.1387 37 1 3.0089 -5.5793 1.2740 38 1 4.6875 -5.3890 -0.3680 39 1 4.6586 -6.3557 -1.9050 40 1 4.5313 -10.8628 1.4977 41 1 3.3762 -8.5850 -1.4658 42 1 2.8337 -8.6120 0.2669 43 1 2.1912 -7.4373 -3.6245 44 1 0.1875 -5.9439 -4.4202 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101623069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:41 Heat of formation + Delta-G solvation = 56.441813 kcal Electronic energy + Delta-G solvation = -29329.596424 eV Core-core repulsion = 25199.848547 eV Total energy + Delta-G solvation = -4129.747876 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 9.24 seconds Orbital eigenvalues (eV) -49.88181 -43.69634 -40.87729 -40.28076 -37.29325 -35.98531 -34.84547 -33.62858 -32.13162 -29.75973 -29.36583 -28.81757 -28.25328 -26.83700 -26.02969 -23.94230 -22.81754 -22.71112 -21.22306 -20.30017 -20.16836 -19.09475 -18.86269 -17.91599 -17.27342 -17.10123 -16.75591 -16.53096 -16.13641 -15.95619 -15.70588 -15.49515 -15.30681 -15.11447 -14.76656 -14.53384 -14.31660 -14.17207 -13.95119 -13.72728 -13.63264 -13.35616 -13.29991 -13.20165 -13.00342 -12.91416 -12.74277 -12.54197 -12.43414 -12.17643 -11.99878 -11.59248 -11.00064 -10.94808 -10.87100 -10.56453 -10.42005 -9.84829 -9.40496 -9.11060 -7.99614 -5.35952 0.07860 0.93371 1.47091 1.47845 1.57910 1.65615 1.80476 1.92658 2.28815 2.43893 2.80590 3.10867 3.14262 3.21292 3.29751 3.48222 3.55052 3.64385 3.89395 4.01947 4.15532 4.25095 4.30601 4.50750 4.51942 4.58938 4.62294 4.65250 4.71270 4.78790 4.80099 4.87716 4.94286 5.01038 5.07217 5.08741 5.13534 5.33347 5.33717 5.42635 5.50947 5.75485 5.87651 6.07607 6.29048 6.79412 6.93063 7.13276 7.49104 8.40082 9.17594 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.003485 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.819249 B = 8031.541983 C = 9465.061391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.049 4.049 3 C -0.126 4.126 4 C -0.054 4.054 5 F -0.140 7.140 6 C 0.548 3.452 7 O -0.531 6.531 8 N -0.705 5.705 9 C 0.237 3.763 10 H 0.121 0.879 11 C -0.084 4.084 12 C 0.116 3.884 13 C 0.126 3.874 14 N -0.618 5.618 15 C -0.231 4.231 16 H 0.094 0.906 17 C -0.056 4.056 18 N -0.949 5.949 19 Si 0.980 3.020 20 H -0.262 1.262 21 H -0.290 1.290 22 H -0.296 1.296 23 C 0.164 3.836 24 N -0.453 5.453 25 C -0.032 4.032 26 C -0.036 4.036 27 N -0.498 5.498 28 C 0.155 3.845 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.412 0.588 36 H 0.110 0.890 37 H 0.121 0.879 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.251 0.749 41 H 0.017 0.983 42 H 0.059 0.941 43 H 0.187 0.813 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 18.753 -2.422 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.052 4.052 3 C -0.182 4.182 4 C -0.076 4.076 5 F -0.119 7.119 6 C 0.337 3.663 7 O -0.410 6.410 8 N -0.357 5.357 9 C 0.130 3.870 10 H 0.138 0.862 11 C -0.122 4.122 12 C 0.030 3.970 13 C 0.000 4.000 14 N -0.344 5.344 15 C -0.358 4.358 16 H 0.112 0.888 17 C -0.250 4.250 18 N -0.596 5.596 19 Si 0.808 3.192 20 H -0.187 1.187 21 H -0.217 1.217 22 H -0.224 1.224 23 C 0.038 3.962 24 N -0.136 5.136 25 C -0.165 4.165 26 C -0.185 4.185 27 N -0.218 5.218 28 C -0.109 4.109 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.248 0.752 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.035 0.965 42 H 0.077 0.923 43 H 0.204 0.796 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.558 18.924 -2.221 20.151 hybrid contribution 2.123 -1.945 -0.103 2.881 sum -4.435 16.979 -2.324 17.702 Atomic orbital electron populations 1.20939 0.88502 1.03359 1.03444 1.23156 0.98431 0.94252 0.89409 1.21068 1.00291 0.92457 1.04393 1.19237 0.77229 0.94026 1.17107 1.91453 1.28529 1.97047 1.94906 1.18523 0.87419 0.83956 0.76442 1.90842 1.13183 1.86968 1.49983 1.45816 1.10810 1.04357 1.74743 1.19745 0.97266 0.83222 0.86768 0.86151 1.22489 0.99533 0.95909 0.94316 1.22982 0.89333 0.99802 0.84846 1.22650 0.89472 0.92041 0.95855 1.45598 1.17749 1.16196 1.54876 1.19329 0.95303 0.99807 1.21348 0.88799 1.25613 1.00377 0.96852 1.02158 1.69977 1.29834 1.11113 1.48715 0.84991 0.78650 0.77841 0.77693 1.18659 1.21653 1.22366 1.22106 0.86089 0.90949 0.97089 1.46474 1.26716 1.29297 1.11120 1.22844 1.03042 1.05849 0.84778 1.22757 0.98906 0.96875 0.99916 1.69806 1.26026 1.26108 0.99866 1.24865 0.92964 0.94339 0.98742 0.90432 0.89114 0.91181 0.88663 0.88021 0.90765 0.75158 0.87123 0.86062 0.90722 0.94280 0.93972 0.96526 0.92293 0.79633 0.78377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 8.33 71.24 0.59 -1.31 16 2 C -0.05 -0.91 6.12 -17.60 -0.11 -1.02 16 3 C -0.13 -1.47 9.78 71.24 0.70 -0.77 16 4 C -0.05 -1.25 7.37 23.50 0.17 -1.08 16 5 F -0.14 -3.24 15.81 44.97 0.71 -2.53 16 6 C 0.55 15.13 7.74 86.63 0.67 15.80 16 7 O -0.53 -16.87 12.73 -4.05 -0.05 -16.92 16 8 N -0.71 -18.69 5.09 -445.17 -2.27 -20.96 16 9 C 0.24 6.88 3.29 45.15 0.15 7.03 16 10 H 0.12 3.48 7.56 -2.39 -0.02 3.47 16 11 C -0.08 -2.47 6.13 31.32 0.19 -2.27 16 12 C 0.12 4.00 1.66 3.92 0.01 4.01 16 13 C 0.13 4.62 8.15 83.46 0.68 5.30 16 14 N -0.62 -28.59 3.76 -738.38 -2.77 -31.37 16 15 C -0.23 -11.76 10.74 84.03 0.90 -10.86 16 16 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 17 C -0.06 -2.95 5.50 84.86 0.47 -2.49 16 18 N -0.95 -53.47 11.51 21.65 0.25 -53.22 16 19 Si 0.98 42.68 29.55 68.60 2.03 44.70 16 20 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 21 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.30 -13.17 7.11 99.48 0.71 -12.46 16 23 C 0.16 7.23 6.95 83.54 0.58 7.81 16 24 N -0.45 -15.25 3.41 -473.30 -1.61 -16.86 16 25 C -0.03 -1.00 12.03 82.99 1.00 0.00 16 26 C -0.04 -1.12 11.86 83.51 0.99 -0.13 16 27 N -0.50 -18.05 11.25 -187.08 -2.11 -20.15 16 28 C 0.15 5.27 8.23 138.31 1.14 6.41 16 29 H 0.08 1.58 7.22 -2.39 -0.02 1.57 16 30 H 0.09 1.04 7.94 -2.39 -0.02 1.02 16 31 H 0.07 1.57 7.22 -2.39 -0.02 1.55 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 0.74 8.05 -2.39 -0.02 0.72 16 34 H 0.07 0.92 7.55 -2.39 -0.02 0.90 16 35 H 0.41 9.91 8.18 -92.70 -0.76 9.15 16 36 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 37 H 0.12 3.34 7.87 -2.39 -0.02 3.32 16 38 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.06 2.90 7.14 -2.39 -0.02 2.89 16 43 H 0.19 4.88 8.06 -2.91 -0.02 4.86 16 44 H 0.20 4.63 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -67.45 369.94 2.59 -64.86 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.28 Total: 26.02 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 8.13 Total: 26.42 kcal Atomic # 7 Polarization: -134.05 SS G_CDS: -8.51 Total: -142.56 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.05 Total: -16.92 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.71 Total: -2.53 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -67.45 2.59 -64.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101623069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.301 kcal (2) G-P(sol) polarization free energy of solvation -67.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.24 seconds